mRNA_Ecto-sp13_S_contig6432.17192.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6432.17192.1
Unique NamemRNA_Ecto-sp13_S_contig6432.17192.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6432.17192.1 vs. uniprot
Match: D8LKI5_ECTSI (Rhodanese domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI5_ECTSI)

HSP 1 Score: 594 bits (1531), Expect = 2.560e-208
Identity = 339/472 (71.82%), Postives = 349/472 (73.94%), Query Frame = 1
Query:   82 MDPSLEPSARCCDQQQQQHPAVAVAPREASEETGGVLLYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVKAHAALRGHDIDFKLASSRGARNSQAAEESGFTTLSVKAVKEVVTLGTRGAGLSHLEGGRHVSAQEFHRLLQEGAARKRQADKVVSGEGGERVSSGGEPIAAAAGGVVGLSSLDAPAPPDDRGGDLAEATPTRRSGHGTVVARAMKEGASTVSEGCIGAPAPAAALAIVGKRLRGGEGDKGDKDVP-GRSDSAGANAEDATVAKEKEAVLLDVRNVYETSIGRFSVEGVETLDPKTRQFSDLPKWVDENAYRLRQGARVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHGAEDPGRAREAQAXXXXXXXXXXXXXXXXXXXXVRXXXXXXXXXXXXXXXXXXQEQSPEGFFHGKNFVFDER 1494
            MDPSL+PSARCCDQ                EETGG+LLYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSV+AH ALRGHDIDFKLASSRGARNSQAA+ESGFTTLSVKAVKEVVTLGTRGAGLSHLEGGRHVS QEFHRLLQEGAAR RQA KVV  EGG R SSG E +AA AGGVVGLSSLDAP P DDRGGDLAEATPTRRSGHGTVVARAM EGASTVSEGC GAPAPAAA AIVGK L+GGEGDKGDKDVP G S+SAGANAEDATVA+EKEAVLLDVRNVYETSIGRF                              +G RVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQ+   G E                                                    QSPEGFF GKNFVFDER
Sbjct:    1 MDPSLDPSARCCDQXXXXXXXXXXX-XXXXEETGGILLYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHVALRGHDIDFKLASSRGARNSQAAQESGFTTLSVKAVKEVVTLGTRGAGLSHLEGGRHVSPQEFHRLLQEGAARNRQAHKVVCDEGGGRTSSGKESVAATAGGVVGLSSLDAPTPADDRGGDLAEATPTRRSGHGTVVARAMNEGASTVSEGCAGAPAPAAAPAIVGKSLQGGEGDKGDKDVPPGCSESAGANAEDATVAEEKEAVLLDVRNVYETSIGRF------------------------------RGKRVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQSAGGGGE----------------------------------------------------QSPEGFFRGKNFVFDER 389          
BLAST of mRNA_Ecto-sp13_S_contig6432.17192.1 vs. uniprot
Match: A0A6H5K881_9PHAE (UPF0176_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K881_9PHAE)

HSP 1 Score: 471 bits (1213), Expect = 1.670e-160
Identity = 279/424 (65.80%), Postives = 289/424 (68.16%), Query Frame = 1
Query:   82 MDPSLEPSARCCDQQQQQHPAVAVAPREASEETGGVLLYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVKAHAALRGHDIDFKLASSRGARNSQAAEESGFTTLSVKAVKEVVTLGTR----------------------------------------------------------------------------------------------GAGLSHLEGGRHVSAQEFHRLLQEGAARKRQADKVVSGEGGERVSSGGEPIAAAAGG------------VVGLSSLDAPAPPDDRGGDLAEATPTRRSGHGTVVARAMKEGASTVSEGCIGAPAPAAALAIVGKRLRGGEGDKGDKDVPGRSDSAGANAEDATVAKEKEAVLLDVRNVYETSIGRF 1035
            MDPSLEPSARCCDQQQQ  PAVA APR ASE+TGGVLLYYKYIPLGEEGR  VKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSV+AHAAL+GHDIDFKLASSRGARNSQAA+ESGFTTLSVK VKEVVTLGTR                                                                                              GAGLSHLEGGRHVS QEFHRLLQEGAAR RQA KV  GE G RVSSG E +AA                VVGLSSLDAP P DDRGGDLAEATPTRRSGHGTVVARA KEGASTVS+GC GAPAP AALA+VGK+LRGGE DK DKD+PG SD AGANAEDATVA+EKEAVLLDVRNVYETSIGRF
Sbjct:    1 MDPSLEPSARCCDQQQQD-PAVAAAPRGASEDTGGVLLYYKYIPLGEEGRTAVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVEAHAALQGHDIDFKLASSRGARNSQAAQESGFTTLSVKEVKEVVTLGTRVSFFDISLPGRLHNRSVFLAKVPPHVKRRAVERLLAATITHKASHEFSFRRHTCFFSLPAATVSRSDHVFRCHLHTAVHKKVSHMIYTRTLRFQGAGLSHLEGGRHVSPQEFHRLLQEGAARNRQAHKVACGERGGRVSSGRESVAATXXXXXXXXXXXXXXXVVGLSSLDAPTPADDRGGDLAEATPTRRSGHGTVVARATKEGASTVSDGCAGAPAPVAALAVVGKKLRGGEADKRDKDLPGCSDGAGANAEDATVAEEKEAVLLDVRNVYETSIGRF 423          
BLAST of mRNA_Ecto-sp13_S_contig6432.17192.1 vs. uniprot
Match: A0A8J4C990_9CHLO (Rhodanese domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C990_9CHLO)

HSP 1 Score: 201 bits (511), Expect = 3.740e-52
Identity = 177/500 (35.40%), Postives = 235/500 (47.00%), Query Frame = 1
Query:  139 PAVAVAPREASEETG---GVLLYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVKAHAALRGHDIDFKLASSRGARNSQAAEESGFTTLSVKAVKEVVTLG--TRGAGLSHLEGGRHVSAQEFHRLLQEGAARKRQADKVVSG---EGGERVSSGGEPIAAAAGGVVGLSSLDAPAPPDDRGGDLAEATPTRRSGHGTVVARAMK-EGASTVSEGCIGAPAPA---AALAIVGKRLRGGEGDKGDKDVPGRSDSAGANAEDATVAKEKEAVLLDVRNVYETSIGRFSV-EGVETLDPKTRQFSDLPKWVDENAYRLRQGARVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHGAEDPGRAREAQAXXXXXXXXXXXXXXXXXXXXVRXXXXXXXXXXXXXXXXXXQEQSPEGFFHGKNFVFDERVSV-PE---------------TPAGGVVMGRCVLC 1551
            P +A  P   S +T    G+LLYYKY+PL       V  +Y E C    LRGR+RVA DGVN T+GGS++AL+ H+ +V  H  LRG DIDFKLA+S G RN     E+    L V+  +E+VTLG   R           H++ ++FH++L          D V++G     GE VS+G   + A A     L   +A A P    G  +++T  +R+  GT V      E   + + G  GA APA   AA      R  G EG  G   +    D+A A +           VLLD RN+YET IG F     V TLDP+TR FSDLP W+D +   LR    VLMYCTGGVRCE ASA +R   +     + V QLSGGI+RYL+ +P G                                                          G+F GKNF++D+R++V PE               +P+ GVV GRC++C
Sbjct:    9 PPLASKPLTQSTQTSEVQGILLYYKYLPLQGGDAEDVTKFYTELCSRLDLRGRIRVARDGVNVTVGGSMSALQAHVAAVTEHPLLRGSDIDFKLAASGGPRNEVTRSETKMDRLVVRLCEELVTLGPLARHRADPRANTAPHLTPEQFHQIL----------DGVIAGLPVPPGEGVSAGSRVVPAPAASGTHLRP-EAAAAPTVGSGPGSKSTAAKRNPLGTCVEDVEDVEAPRSNTGGRGGALAPAGHPAATLTDASRGSGVEG-CGISCIHRTGDNAAAGS----------VVLLDARNIYETRIGHFDAGPAVTTLDPRTRCFSDLPAWLDAHEELLRNRT-VLMYCTGGVRCERASAYLR---EKGPEFSRVFQLSGGIQRYLERFPDG----------------------------------------------------------GYFRGKNFLYDDRIAVGPEISEQVSPRPWCSSSSSPSPGVV-GRCLMC 423          
BLAST of mRNA_Ecto-sp13_S_contig6432.17192.1 vs. uniprot
Match: A0A8J4BKJ0_9CHLO (Rhodanese domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BKJ0_9CHLO)

HSP 1 Score: 199 bits (507), Expect = 1.390e-51
Identity = 167/489 (34.15%), Postives = 218/489 (44.58%), Query Frame = 1
Query:  175 ETGGVLLYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVKAHAALRGHDIDFKLASSRGARNSQAAEESGFTTLSVKAVKEVVTLG--TRGAGLSHLEGGRHVSAQEFHRLLQEGAARKRQADKVVSGEGGERVSSGGE--PIAAAAGGVV----GLSSLDAPAPPDDRGGDLAEATP---TRRSGHGTVVARAMKEGASTVSEGCIGAPAPAAALAIVGKRLRGGEGDKGDKDVPGRSDSAGANAEDATVAKEKEAVLLDVRNVYETSIGRFSV-EGVETLDPKTRQFSDLPKWVDENAYRLRQGARVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHGAEDPGRAREAQAXXXXXXXXXXXXXXXXXXXXVRXXXXXXXXXXXXXXXXXXQEQSPEGFFHGKNFVFDERVSV-PET--------------PAGGVVMGRCVLCERP 1560
            E  GVLLYYKY+PL       V ++Y E C    LRGR+RVA DG+N T+GGS++AL+ H  +V AH  LRG DIDFKLA+S G RN     E+    L V+  +E+VTLG   R           H++ ++FH+LL+   A        V+   G+ + +GG   P  A +G  V      ++  APA            +      RS  GT V     +G           PA  AA    G     G GD G   V       GA+   +        VLLD RN+YET IG F     V TLDP+TR FSDLP W+D +   LR    VLMYCTGGVRCE ASA +R   +     + V QLSGGI+RYL+ +P G                                                          G+F GKNF++D+R++V PE               P    V+GRC++C  P
Sbjct:   24 EMQGVLLYYKYLPLQGGDAEHVANFYTELCNRLDLRGRIRVARDGINVTVGGSMSALQAHAAAVTAHPLLRGSDIDFKLAASGGPRNEVTRSETKMDRLVVRLCEELVTLGPLARHRADPRASTAPHLTPEQFHQLLERATA-------GVAVPPGKGIWAGGRELPEPAVSGAHVRWQAAPAAAAAPAAAXXXXXXXXXGSAFDGAARSPPGTCVEGIAAQGGKPGGGVRALVPADDAAATFTGAISGSGVGDGGTNGVRRTGGDGGADGSVSVFGAAGSVVLLDARNIYETRIGHFHAGPSVTTLDPRTRCFSDLPAWLDAHEELLRNRT-VLMYCTGGVRCERASAYLR---EKGPEFSHVFQLSGGIQRYLERFPDG----------------------------------------------------------GYFRGKNFLYDDRIAVGPEGTEQVSPRPGASSSFPLSSGVVGRCLMCRCP 443          
BLAST of mRNA_Ecto-sp13_S_contig6432.17192.1 vs. uniprot
Match: A0A835YLH4_9STRA (Rhodanese domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLH4_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.550e-51
Identity = 158/466 (33.91%), Postives = 179/466 (38.41%), Query Frame = 1
Query:  169 SEETGGVLLYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVKAHAALRGHDIDFKLASSRGARNSQAAEESGFTTLSVKAVKEVVTLG---------------------TRGAGLSHLEGGRHVSAQEFHRLLQEGAARKRQADKVVSGEGGERVSSGGEPIAAAAGGVVGLSSLDAPAPPDDRGGDLAEATPTRRSGHGTVVARAMKEGASTVSEGCIGAPAPAAALAIVGKRLRGGEGDKGDKDVPGRSDSAGANAEDATVAKEKEAVLLDVRNVYETSIGRFSVEGVETLDPKTRQFSDLPKWVDENAYRLRQGARVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHGAEDPGRAREAQAXXXXXXXXXXXXXXXXXXXXVRXXXXXXXXXXXXXXXXXXQEQSPEGFFHGKNFVFDERVSV 1503
            ++    VLLYYKY+ LGE+ R   + WY E C    L GRVRVALDGVNCTLGG  AAL+ HI  VKAH  LRG DIDFKL+ S GA N+ A  ESGF  LSVKAVKEV T                       + GA +      RHVS QEFH +L                                                                                             A A                                        +LLD RN YE+ IGRF   GV  L P+TRQFSDLP+W+D +   L +G  VLMYCTGGVRCE ASA +R    A A   DV+QLSGGIERYLQA+P G                                                          GFF GKNFVFDERVSV
Sbjct:   11 AQTQAAVLLYYKYVDLGEKSREECRAWYQEVCSKANLCGRVRVALDGVNCTLGGCEAALQHHITQVKAHPVLRGADIDFKLSPSPGALNAAARRESGFDQLSVKAVKEVRTRAHFNSVNVLLYDPAHTLALCVVSLGAQVPAELSARHVSPQEFHAML---------------------------------------------------------------------------------------------AAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVMLLDARNGYESDIGRFGARGVPLLAPRTRQFSDLPRWIDAHLAEL-EGRTVLMYCTGGVRCERASAYLRAKGPAFA---DVVQLSGGIERYLQAFPDG----------------------------------------------------------GFFAGKNFVFDERVSV 321          
BLAST of mRNA_Ecto-sp13_S_contig6432.17192.1 vs. uniprot
Match: A0A7S1X6D0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X6D0_9CHLO)

HSP 1 Score: 186 bits (472), Expect = 1.380e-50
Identity = 149/464 (32.11%), Postives = 186/464 (40.09%), Query Frame = 1
Query:  172 EETGGVLLYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVKAHAALRGHDIDFKLASSRGARNSQAAEESGFTTLSVKAVKEVVTLGTRGAGLSHLEGGRHVSAQEFHRLLQEGAARKRQADKVVSGEGGERVSSGGEPIAAAAGGVVGLSSLDAPAPPDDRGGDLAEATPTRRSGHGTVVARAMKEGASTVSEGCIGAPAPAAALAIVGKRLRGGEGDKGDKDVPGRSDSAGANAEDATVAKEKEAVLLDVRNVYETSIGRFSVEGVETLDPKTRQFSDLPKWVDENAYRLRQGARVLMYCTGGVRCELASA-LVRRHCDADATGTDVLQLSGGIERYLQAYPHGAEDPGRAREAQAXXXXXXXXXXXXXXXXXXXXVRXXXXXXXXXXXXXXXXXXQEQSPEGFFHGKNFVFDERVSVPETP-AGGVVMGRCVLCER 1557
            + T GVLLYYKY+ L E  R  V  W    C    L GRVRVALDG+N TLGG+ A L+ HI +V+AH  + G DIDFKLA S GA N QA+ E+GF  L V    E+VTLG   AG+   +GG H S  +F   L                   ER S+G                                                                                               A AN            VL+D RN YE+ IGRF VEG+    P+ RQFSD P WVD+N  RLR G  V+MYCTGGVRCE ASA L+++  + +    +V+QL GGI+RYL+A+P G                                                          GFF GKNFVFD+R+++      G  V+G C+ C R
Sbjct:    2 DATQGVLLYYKYVTLSENEREAVASWLETLCKDLALVGRVRVALDGINVTLGGNTAQLQEHIAAVQAHPLVGGPDIDFKLAISSGAINEQASHETGFKDLRVLTRAELVTLGPLAAGIRAEQGGTHYSPYDFQDTLL------------------ERQSTG-----------------------------------------------------------------------------------------------AAANT-----------VLIDTRNCYESRIGRFDVEGIAVEVPQIRQFSDFPAWVDDNVERLR-GKTVMMYCTGGVRCERASAYLIKKGAEFE----NVIQLEGGIQRYLEAFPDG----------------------------------------------------------GFFKGKNFVFDDRLAIAGAEDVGSGVVGACMSCGR 278          
BLAST of mRNA_Ecto-sp13_S_contig6432.17192.1 vs. uniprot
Match: A0A176WBI6_MARPO (Rhodanese domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WBI6_MARPO)

HSP 1 Score: 184 bits (466), Expect = 5.650e-47
Identity = 149/473 (31.50%), Postives = 196/473 (41.44%), Query Frame = 1
Query:  151 VAPREASEETGGVLLYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVKAHAALRGHDIDFKLASSRGARNSQAAEESGFTTLSVKAVKEVVTLGTRGAGL--SHLEGGRHVSAQEFHRLLQEGAARKRQADKVVSGEGGERVSSGGEPIAAAAGGVVGLSSLDAPAPPDDRGGDLAEATPTRRSGHGTVVARAMKEGASTVSEGCIGAPAPAAALAIVGKRLRGGEGDKGDKDVPGRSDSAGANAEDATVAKEKEAVLLDVRNVYETSIGRFSV-EGVETLDPKTRQFSDLPKWVDENAYRLRQGARVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHGAEDPGRAREAQAXXXXXXXXXXXXXXXXXXXXVRXXXXXXXXXXXXXXXXXXQEQSPEGFFHGKNFVFDERVSVPETPAGGVVMGRCVLCERP 1560
            V+ +E      GVLLYYK+  + +     +K W  + C    L GR+RVA DG+N T+GG L AL+ HI  V ++    G   DFK+AS     N +AA E GFT+LS +AVKE+VTLG   +    S    GRH +AQEFH++LQE A                                                  L EA                +EG+ T                                                     K+ +++D RNVYET IG+FS  EGVE +DP  RQ+SDLP W+D+N  RLR   ++LMYCTGGVRCE+ASA +R          DV+QLSGGI+RY++A+P G                                                          G+F GKNFVFD R++VP      VV+GRC+ C  P
Sbjct:   15 VSDKEGDVAEDGVLLYYKFAQIDDPDG--MKTWLFDLCSSLGLLGRIRVAPDGINITVGGKLTALQEHIRVVSSNPLFTG--TDFKIASCSPPANPKAAAECGFTSLSARAVKELVTLGLHPSVQPPSVSNAGRHATAQEFHKILQERA--------------------------------------------------LGEA----------------QEGSDT---------------------------------------------------SLKQTIVVDARNVYETRIGKFSAGEGVEVMDPMVRQYSDLPGWIDDNEDRLRN-KQILMYCTGGVRCEMASAYIR---SKGKEFEDVVQLSGGIQRYMEAFPDG----------------------------------------------------------GYFVGKNFVFDHRLAVPSL--NKVVLGRCLQCNTP 302          
BLAST of mRNA_Ecto-sp13_S_contig6432.17192.1 vs. uniprot
Match: A0A4U6VJ36_SETVI (Rhodanese domain-containing protein n=1 Tax=Setaria viridis TaxID=4556 RepID=A0A4U6VJ36_SETVI)

HSP 1 Score: 175 bits (443), Expect = 4.050e-46
Identity = 145/475 (30.53%), Postives = 191/475 (40.21%), Query Frame = 1
Query:  154 APREASEETG-------GVLLYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVKAHAALRGHDIDFKLASSRGARNSQAAEESGFTTLSVKAVKEVVTLGTR--GAGLSHLEGGRHVSAQEFHRLLQEGAARKRQADKVVSGEGGERVSSGGEPIAAAAGGVVGLSSLDAPAPPDDRGGDLAEATPTRRSGHGTVVARAMKEGASTVSEGCIGAPAPAAALAIVGKRLRGGEGDKGDKDVPGRSDSAGANAEDATVAKEKEAVLLDVRNVYETSIGRFSVEGVETLDPKTRQFSDLPKWVDENAYRLRQGARVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHGAEDPGRAREAQAXXXXXXXXXXXXXXXXXXXXVRXXXXXXXXXXXXXXXXXXQEQSPEGFFHGKNFVFDERVSVPETPAGGVVMGRCVLC 1551
            A R+  + TG       GVLLYYKY  + +   A +  +Y  HC    L GRVRV  DGVN TLGG + AL +HI  + + A   G   DFKLAS     + + A E GFT+LSV+ VKE+VTL +    A    L  G+H+SA EFH +LQ                                                                                                               +V G S  A A+AE      + E V++D RNVYET IG+F+V  VETLDP+ RQ+SDLP W+DE+  +LR G  +LMYCTGG+RCE+ASA +R   +      +V QL GGI+RYL+ +P G                                                          G+F GKNFVFD R+SV        ++G C++C
Sbjct:    3 ATRQQEQHTGDGGGDRYGVLLYYKYAEVPDA--AALAAFYETHCRSLSLVGRVRVGPDGVNATLGGRMTALEKHIAEMSSKALFDG--TDFKLASCEDPVDERVARECGFTSLSVRVVKELVTLCSNPTSAPPEILGAGKHLSAAEFHSVLQ---------------------------------------------------------------------------------------------------------------NVAGTSSDAVASAE------KNEVVVVDARNVYETRIGKFNVPNVETLDPEIRQYSDLPSWIDEHTEKLR-GKSILMYCTGGIRCEMASAYIRSKGEGFE---NVFQLYGGIQRYLEQFPDG----------------------------------------------------------GYFEGKNFVFDHRISVGSLKEN--ILGTCLIC 292          
BLAST of mRNA_Ecto-sp13_S_contig6432.17192.1 vs. uniprot
Match: A0A0A9IQ92_ARUDO (Rhodanese domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9IQ92_ARUDO)

HSP 1 Score: 174 bits (441), Expect = 9.030e-46
Identity = 142/457 (31.07%), Postives = 187/457 (40.92%), Query Frame = 1
Query:  187 VLLYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVKAHAALRGHDIDFKLASSRGARNSQAAEESGFTTLSVKAVKEVVTLGTR--GAGLSHLEGGRHVSAQEFHRLLQEGAARKRQADKVVSGEGGERVSSGGEPIAAAAGGVVGLSSLDAPAPPDDRGGDLAEATPTRRSGHGTVVARAMKEGASTVSEGCIGAPAPAAALAIVGKRLRGGEGDKGDKDVPGRSDSAGANAEDATVAKEKEAVLLDVRNVYETSIGRFSVEGVETLDPKTRQFSDLPKWVDENAYRLRQGARVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHGAEDPGRAREAQAXXXXXXXXXXXXXXXXXXXXVRXXXXXXXXXXXXXXXXXXQEQSPEGFFHGKNFVFDERVSVPETPAGGVVMGRCVLC 1551
            VLLYYKY  + +   A +  +Y  HC    L GRVRV  DGVN TLGG + AL +HI  + ++A   G   DFKLAS     + + A E GFT+LSV+ VKE+VTL +    A       GRH+SA EFH +LQ                                  VVG +SLDA AP                                                                                   A++ E V+LD RNVYET IG+F+V  VETLDP+ RQ+SDLP W+DE+  +LR G  ++MYCTGG+RCE+ASA +R   +      +V QL GGI+RY++ +P G                                                          G+F GKNFVFD R+SV        ++G C++C
Sbjct:   27 VLLYYKYAEVPDA--AALAAFYEAHCRGLALVGRVRVGPDGVNATLGGRMTALEKHIAEMSSNALFEG--TDFKLASCDDPVDERVARECGFTSLSVRVVKELVTLCSNPTSAPPEISSAGRHLSAAEFHSVLQS---------------------------------VVG-NSLDAGAP-----------------------------------------------------------------------------------AEKNEVVVLDARNVYETRIGKFNVPNVETLDPEIRQYSDLPSWIDEHTEKLR-GKSIMMYCTGGIRCEMASAYIRSKGEGFE---NVFQLYGGIQRYMEQFPDG----------------------------------------------------------GYFEGKNFVFDHRISVGSLKEN--ILGTCLIC 298          
BLAST of mRNA_Ecto-sp13_S_contig6432.17192.1 vs. uniprot
Match: UPI00098E15DE (rhodanese-like domain-containing protein 6 isoform X1 n=2 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E15DE)

HSP 1 Score: 178 bits (452), Expect = 1.350e-45
Identity = 143/463 (30.89%), Postives = 189/463 (40.82%), Query Frame = 1
Query:  175 ETGGVLLYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVALDGVNCTLGGSLAALRRHIGSVKAHAALRGHDIDFKLASSRGARNSQAAEESGFTTLSVKAVKEVVTLGT----RGAGLSHLEGGRHVSAQEFHRLLQEGAARKRQADKVVSGEGGERVSSGGEPIAAAAGGVVGLSSLDAPAPPDDRGGDLAEATPTRRSGHGTVVARAMKEGASTVSEGCIGAPAPAAALAIVGKRLRGGEGDKGDKDVPGRSDSAGANAEDATVAKEKEAVLLDVRNVYETSIGRFSVEGVETLDPKTRQFSDLPKWVDENAYRLRQGARVLMYCTGGVRCELASALVRRHCDADATGTDVLQLSGGIERYLQAYPHGAEDPGRAREAQAXXXXXXXXXXXXXXXXXXXXVRXXXXXXXXXXXXXXXXXXQEQSPEGFFHGKNFVFDERVSVPETPAGGVVMGRCVLC 1551
            E  GVLLYYKY P+ +   A +  +Y  +C    L GRVRVA DGVN T+GG + AL +HI ++++ +   G   DFKLAS  G  N + A E GFT LSV+ VKE+VT  +    +   +SH   G+H+SA EFH +LQ                                                                                                                     D+AG  ++     +EK+ +LLD RN+YET IG+F    VETLDP+ RQ+SDLP W+DE+A +L QG  VLMYCTGG+RCE+ASA +R      A   +V QL GGI+RYL+ +P G                                                          GFF GKNFVFD RVSV        ++G C++C
Sbjct:    3 EPDGVLLYYKYAPVPDV--AALVRFYESNCRSLGLLGRVRVAPDGVNVTVGGKMPALEKHIEALRSDSLFEG--TDFKLASCDGPSNERIARECGFTDLSVRVVKELVTFRSDPLLKPPEISHA--GKHLSATEFHSVLQ---------------------------------------------------------------------------------------------------------------------DAAGKVSDSQASTQEKQLLLLDARNLYETRIGKFQNPDVETLDPEIRQYSDLPSWIDEHAEQL-QGKNVLMYCTGGIRCEMASAYIR---SKGAGYENVFQLYGGIQRYLEQFPDG----------------------------------------------------------GFFKGKNFVFDHRVSVGSQDTN--ILGACLIC 278          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6432.17192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKI5_ECTSI2.560e-20871.82Rhodanese domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K881_9PHAE1.670e-16065.80UPF0176_N domain-containing protein n=1 Tax=Ectoca... [more]
A0A8J4C990_9CHLO3.740e-5235.40Rhodanese domain-containing protein n=2 Tax=Volvox... [more]
A0A8J4BKJ0_9CHLO1.390e-5134.15Rhodanese domain-containing protein n=1 Tax=Volvox... [more]
A0A835YLH4_9STRA3.550e-5133.91Rhodanese domain-containing protein n=1 Tax=Tribon... [more]
A0A7S1X6D0_9CHLO1.380e-5032.11Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A176WBI6_MARPO5.650e-4731.50Rhodanese domain-containing protein n=2 Tax=Marcha... [more]
A0A4U6VJ36_SETVI4.050e-4630.53Rhodanese domain-containing protein n=1 Tax=Setari... [more]
A0A0A9IQ92_ARUDO9.030e-4631.07Rhodanese domain-containing protein n=1 Tax=Arundo... [more]
UPI00098E15DE1.350e-4530.89rhodanese-like domain-containing protein 6 isoform... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6432contigEcto-sp13_S_contig6432:936..8252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score601.3
Seed ortholog evalue4.3e-169
Seed eggNOG ortholog2880.D8LKI5
Preferred nameTSTD2
Model size1560
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.Rhodanase C-terminal
EggNOG OGs2QSQK@2759,COG1054@1
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-16_003090.1
Cds size1560
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6432.17192.1prot_Ecto-sp13_S_contig6432.17192.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6432 936..8252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463888.697928-CDS-Ecto-sp13_S_contig6432:935..10151681463888.697928-CDS-Ecto-sp13_S_contig6432:935..1015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6432 936..1015 +
1681463888.7132702-CDS-Ecto-sp13_S_contig6432:2064..22711681463888.7132702-CDS-Ecto-sp13_S_contig6432:2064..2271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6432 2065..2271 +
1681463888.723944-CDS-Ecto-sp13_S_contig6432:2477..26311681463888.723944-CDS-Ecto-sp13_S_contig6432:2477..2631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6432 2478..2631 +
1681463888.7337625-CDS-Ecto-sp13_S_contig6432:3300..33721681463888.7337625-CDS-Ecto-sp13_S_contig6432:3300..3372Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6432 3301..3372 +
1681463888.7438233-CDS-Ecto-sp13_S_contig6432:3651..41751681463888.7438233-CDS-Ecto-sp13_S_contig6432:3651..4175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6432 3652..4175 +
1681463888.75564-CDS-Ecto-sp13_S_contig6432:4540..46371681463888.75564-CDS-Ecto-sp13_S_contig6432:4540..4637Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6432 4541..4637 +
1681463888.7665305-CDS-Ecto-sp13_S_contig6432:5687..60461681463888.7665305-CDS-Ecto-sp13_S_contig6432:5687..6046Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6432 5688..6046 +
1681463888.776013-CDS-Ecto-sp13_S_contig6432:8185..82521681463888.776013-CDS-Ecto-sp13_S_contig6432:8185..8252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6432 8186..8252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6432.17192.1

>prot_Ecto-sp13_S_contig6432.17192.1 ID=prot_Ecto-sp13_S_contig6432.17192.1|Name=mRNA_Ecto-sp13_S_contig6432.17192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=520bp
QGASCHSRASVVLSTRPSCKTTETTLSMDPSLEPSARCCDQQQQQHPAVA
VAPREASEETGGVLLYYKYIPLGEEGRAVVKDWYVEHCGVERLRGRVRVA
LDGVNCTLGGSLAALRRHIGSVKAHAALRGHDIDFKLASSRGARNSQAAE
ESGFTTLSVKAVKEVVTLGTRGAGLSHLEGGRHVSAQEFHRLLQEGAARK
RQADKVVSGEGGERVSSGGEPIAAAAGGVVGLSSLDAPAPPDDRGGDLAE
ATPTRRSGHGTVVARAMKEGASTVSEGCIGAPAPAAALAIVGKRLRGGEG
DKGDKDVPGRSDSAGANAEDATVAKEKEAVLLDVRNVYETSIGRFSVEGV
ETLDPKTRQFSDLPKWVDENAYRLRQGARVLMYCTGGVRCELASALVRRH
CDADATGTDVLQLSGGIERYLQAYPHGAEDPGRAREAQAAAAAAATPAQA
EAAAAAAGAVREEDSGGVAGGGFQSAGGGQEQSPEGFFHGKNFVFDERVS
VPETPAGGVVMGRCVLCERP
back to top

mRNA from alignment at Ecto-sp13_S_contig6432:936..8252+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6432.17192.1 ID=mRNA_Ecto-sp13_S_contig6432.17192.1|Name=mRNA_Ecto-sp13_S_contig6432.17192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7317bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6432:936..8252+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGTGCAAGCTGCCACAGCAGAGCCTCTGTTGTACTCTCAACAAGGCC CTCCTGCAAAACAACGGAAACGACCCTCAGGTGATTGAGCGAATGCTACC ATCGCACCTGGATACACGACAGGCAAGATATCTGTTGAGAAGCAACCCTG ACACTCGTGTACATGAGTGAGGGCACACGGCCGAATGCATCGAAAATCCG TCTTCCTGCCTTTGCTGCACTTCAAGAACGGTGTAGCAGTAGCCTCTAGT CTACGCCGCCACCGTCGTGCTTTGCAGGCGTCCAAGTCAGGCAGCATTTC GAGTCACATGCCGATGCGATGCATCGACATGAGATAACCCTCACCCAAAC ACAACCTCCACCGATTGATGCGAGGTCAGTGTACCGTGGACACACACTGG AGACATGTAGGGTAAGCTGCTGTAATGCGTGTGACAATTCCGAGATGGGA CTCATTTGCCCTTGACTACGACAGCATGCACGCCCACGTGTACGCAGTAC AGGATGTGACAGCATGAGATCTCCTTGGCCGGCTTCTTCATTTTTGTCCT TGGCGGTAGGGATTCCGGACAGCCGTGGAGCTGCTTCTAGTCAGAGATTG CTTTTGCATCATCGAAATACCCTTTGGTGTGCGTGTGGTGTATGACAAAT ACGGGTGTGAGTTCTACCGCAGCAGGTGTGAGGTGCGATCTATGTTAGGG TTAGGAGTAAGGGAGGGCACGGCTTGCTGTTGCAGCAGGGCAAGTACTGC TGGTGTTCGGGGCCAACGTACAGCTTCTTGGTTTGATGTGTGCGCTAACT GTCGCAGTCGCGTGCCTTATGTTGAACAACCGCAGCTCTGTTTCTACCGT CTTTCCTTGCGAATCAGCGTCTAGAGCTGCCGGAGGAAGTGGCGATGAGA AGTTGTACGTTCACTCAAGCCGCTGGCAAGGACACGGCAGACTTGGTTCG TTATCTTGAGCAGCTGATCAACGCCTGAATGCTAGCTTTAGCGTCAACCC TCGCAGCAGAGTGACCCTTTGGATACTACTTTGGGCCAATAAGTTTTATT GTTATTACTTCAGAGTTCAACATCAAAGATCACGTGATTCCTCGCCCCTC ATCCCCGGCCCACGTCTTCAACTTCATAGTATGGACCCTTCCCTGGAGCC CAGCGCTCGGTGTTGCGATCAGCAGCAGCAGCAGCATCCCGCAGTAGCAG TAGCACCGCGAGAGGCAAGCGAGGAGACAGGTGGTGTCCTACTGTACTAC AAGTACATCCCACTCGGCGAAGAGGGGAGGGCGGTTGTGAAGGATTGGTA CGTTGAGCACTGCGGGGTCGAGCGGCTTCGAGGAAGGTAAGGCTAGGAGA GGATGGGGAGGGGGAAACCTTCGGAGGGACGGGAGAGCAGCGTCATGTAA ACTATACAACAATGACAACAACGAGAGCCAGAGACGTTCCGTCGCCACCA CCTTCACAGCCATTCATCCTCGCCAACGACAACATCGAAACACTGACCAC CACCCCGTCAATCTGTTCCTACATTACCACGGACGAGGGAAGGGTGCGCG TAGCCCTAGACGGCGTGAACTGCACCCTGGGTGGAAGCCTAGCGGCTCTG CGCAGGCACATCGGCAGCGTCAAGGCACACGCGGCCCTGCGAGGGCACGA TATCGACTTCAAGCTCGCCTCCTCACGAGGGGCGAGAAACTCCCAGGTGC CAAGCTGGTTTGTCCACTGATTTTGGCGCTTAGAATAGCACGATGGGTTT CCTGTTGTGTGGACGCATGCGCCCGGCGCGATTGCAAGCCTCCCGGAGAG ACTAAATCATGGTCGTGTTTTTCTGTCGGCGTCAGGTGGAACAAGGATTG TGTCGTAGGAGTCGCTTGAGCCGATGCTCGCGTGATGCGGTAGAGGCAGC AGCTTGCTCAGGAAACGGCGACGTTCCTGCCACCGCCACCGGGTCGTCCC CCGTGGTCGTGGCGTTGCCTCCCAGTCCCGGCTGCCCCCCTTTTCTCGCT TGTTTTGTGGCCTAATCTTCGTCCAAAGGTGTTCTTCTGGTTAGTGCGGA GGAGTTGCGACTGATCGTACCTGTCTACACACTGCTTGTATAGAATCGGT GCGGTGACTGGATAGTACTTCCTCTCGTCCCGCATGAGCATCATGCTGTC TTCCTCCCCGCCCCACCTAGCTCAGTCTCGTGAAGTTTCAGCTGGAGGCC TCGTTCATGTTGACGCTTCCGTCGGGGGTGCCGTGGCTCGGGGGGCATGC TTTTAGTTGTGCTTCACTCCATCTTTTTTGCCTTCTTGACTTTGACTGCG GATGCTACTGCTGCACCTATTTCCTGGGCTATTCCGCGGCCGATCCCCGC GTTTACTTACCGCAGGCCGCCGAGGAGTCCGGCTTCACGACGCTATCCGT GAAGGCGGTCAAGGAGGTGGTCACTCTCGGTACTCGGGTGAGTTGTGACG ATACTAGCCTTCCAGGGCGTTTGCACAACCGGAGCGTTTTTTGTCGCCAA GGTTCCACCTCACGTGAAGTGTCGAGCGGTCGAGCGCTTGCCTGCGGCAA CCATTGCCCACAAAGCTAATAACGTGTTCAGTTCCCGTCTGCATACCCAC TTTTATTGTTGCCTGCTGCAACTGTTTTCCCGCAGCGATCATGTGTTCAG TTCCCACCTGCATACCACTTGTTACATGAAAGGTTTCACATATACACACG TACCCTGCACTTCCAGGGAGCGGGCCTGTCCCACCTCGAGGGCGGAAGAC ACGTGTCCGCGCAGGAGTTCCACCGCTTGCTGCAGGAGGGGGCCGCTCGG AAGCGGCAAGCCGACAAAGTCGTTTCCGGCGAGGGAGGAGAAAGAGTATC TTCCGGGGGAGAACCCATCGCTGCTGCCGCCGGCGGTGTTGTTGGTTTGT CGTCGCTAGATGCACCTGCGCCGCCGGATGATCGGGGCGGTGATCTGGCG GAGGCAACGCCAACACGGCGAAGCGGTCACGGGACTGTCGTGGCGAGGGC GATGAAAGAAGGAGCTTCGACGGTCTCGGAAGGTTGCATAGGGGCGCCGG CGCCGGCGGCAGCGCTGGCGATAGTAGGCAAACGTTTACGGGGCGGCGAA GGAGACAAAGGGGACAAAGACGTGCCCGGGCGCAGCGACAGTGCTGGGGC TAACGCTGAGGATGCGACGGTGGCGAAGGAAAAGGAGGCAGTGCTGCTTG ACGTGCGAAACGTGTACGAGACCAGCATCGGGCGTTTCAGGTGCGTAGAA GCCTCTTGGTTGTTGTTTGTTCGATCTACTTGAAGTGTGTGATGAGCGTG CCGGCAACAGATGGAAGAACCTTCGAACCCCTCGTAGAAGCGCTAGGTAG CGTGTACAGCAGTACGTGGAACACATGCAGCTTCTCTGCCGGGAATACAA AGAAGATTGCGCCATCCTCGCCTTCAGAACCGAGCCAATGCAGTTCCAAT GCAAACAGAAAGCGGAATGCACGCAACTCGGTTTTGCTGAGAATAGCTTT GCCCCCTCCTCTCGCTCATCCAAGCCCCCCCCGGACGCTCCCCATGACTT TCTTGTCCTTGCTCTCGTCGCATATTGGCGTGCCAACATCCGATATCTAT TTCAGTGTGGAAGGGGTCGAGACACTAGACCCCAAGACCCGTCAATTCAG CGACCTGCCCAAGTGGGTGGACGAGAACGCGTACCGTCTAAGGCAAGGAG CGGTGGAAAGGGGGAGTGGGGGGGAGGCGTACTCTCATGTTTTGTATGCC TTAGCGGTCAGACCGTTGACCCCGCGTCCTCGAGAGGGCGGAGCCTTGTT CCCGCACGACCGATCACCGATGGCCAATGGTTGCTTCCTACTTTGACCAA GGTGGCTCAAGAAAGCCTTCCATCACTTCCCGCCTTGTCAATCAACGGTG GAAGGGGGGGGGGCGGAGGGAGATTCTTTTTTCTCGGGAATGTTGCGCCT GGCACCGCGTTCCCTCTCAGTAGTGTTCAGATTTAAATATCAGAAACAGT GAGGACAGGATAAGACCGAGATGTTACCTTTCCTTCGTCTTGAACCGCGG TCGCGTTTTGTAGCTTTTTTTTCTTGGGAGGTCGAGGGGAAACGTCCATA TCCCCTCGGGCGACGTTCTACCGTGTTTACTGCTCGAATGGTTTTGGTCC CTGTGCGCCGCTCTTGAGAATCCAATCATTTCCAACGCACCCACATTTGG GTAGTTAGTCTGTGCCCACGGACGGCATCCACGGGAGTTGTACACCAACG GGTGTTTGAAGGCACTGGACAAACACACGATCGGTTAATTACGTGAAGAC CGCAACATAACAACAACAACAACAACAACAACAACAACAACAACGTGCTT GACATGCTCGCCATTGCCGACACCGCCCGAGTTGTTTGAAAAGCACGCTT GTTTCTTCGTGCGAGGTTTTGTCTGATGGTTTTCTGTGAGGGTTCACTTT GGCTAGTCGGTAGACACAACCACAGAGACTTGGGAGGTTGCCTCCGTGAA ACTACGTAGAATACTCTCTCCACGCACTGAAGAAACCAAATCAAGAAAGA CCTATGCTTGTTATCCCATTGCAATAAACGCATAGAGCGCCCTATGTATG GGTGAGTTTCTGCCGGCGGTGGAGGCGGTGCTCATTCCCATACGGGATGC GTATTCAATGCCCAATCAGGAAGCGAGTACGTCGCACCCTCGTCCGACCC CCACTACCACCGCCGCCACCTCCTGCAATCCGCAAAACTCACCAGGGGGA AGCGGGTGCTCATGTACTGCACGGGAGGAGTTCGATGCGAGCTGGCGTCT GCGCTTGTCCGGCGGCACTGCGACGCCGACGCCACCGGCACGGACGTCTT GCAGCTCTCGGGCGGCATCGAACGCTACCTTCAAGCCTACCCTCACGGCG CGGAAGATCCGGGACGTGCTAGGGAAGCACAAGCAGCAGCAGCAGCAGCA GCAACACCAGCACAAGCAGAAGCAGCAGCAGCAGCAGCAGGGGCTGTCAG AGAAGAGGACAGCGGGGGGGTCGCCGGTGGGGGGTTCCAGAGCGCGGGAG GGGGGCAGGAGCAGTCGCCGGAGGGGTTCTTCCATGGCAAGAACTTCGTC TTCGACGAGAGGTGCGCCCTTTCTCAGACACCGACAAGAGTGTTGCTGTG TGGCACTTGGTGTGGGTGTGGGTCTGCGTGGCTTGTGTCGCTGACGGGCC TTCCTCCGCAGATTCTTGTCGTCGTTATTTTGCGCTGAGGGTCTGTTGTG AGAGTAGCATTGGACACTTCGTGAGAGCGTGGTGCTTCCTGGACGACGCA ACTAAATAGTAGGTAAAGCCCACGGTTGACAACAGCAACAACAAGGCGAT CACATCATGGCATAACGAAGTTCTCCCGGTGGTACACACAAGTCGGTGTC GTATTTTCACTGAACAATCACTTGGATAGTAGCCTCTGGCTACACCCAAT ACTCAATACTTGGTACCACCCTTACGAATAGCTCCTGCGAAACCGTTTGA ACATCTCGTTACTGTACGGCCTACCCGTATCGTGTGTCGGTTGTGGTCCC GGCGGGTCTTCTCGTTCACCCAGAAAACGCCAACACTCTCTGCTTCGAGC ATTGTGTCGCCAGGCGCAACGCTTCCGTCATCACATGAAGATTCCATTTG TCCATTCTTTGTTGTTGCACTTATTTGCGGCCTCGCTCGCTCGCTAAATC TTTGTTCGCCGATTCCAAGTTGGGGTGTTAGTCAGCGCTATCCCGGAAAA GCAATAAAGAAATCTTGTCCGAAATTTCATGCTGGAATCAAAATCAAAAA TGTTCGAAATTCCAAACTCGGATCAAATCAAATATGTCTGAAACTTCCAT ACTCAAATCAAATAAAATATGTCCGAAATTTCCACACTCAAATCAAATCA AATGTATTTACCGATTTTCATTTTCAGATCGAGCCAAACATGCAATCGAT TTTCATGCTCCATTTCGCTCAGCTCGCCCCACGCGCACGAAATCGCGGCG GTGGGCAAGTTACAGCTGCATGGGCATGCCCCCCAAGCCTCTCGAACGCT GGTGGCGAGCACCGCGAGCACAGCTACAAGCAGCATTCTTCCGAAACCTA CCTGTACTGCTCCATTTGTGCGAGGGTTCATCAGGGGGCTGCATGGGTAT CATCGGCGACGATTGGTTGGATTAAAACACATGCAAACCGCGTCTGCGGT GGATAAAGAAAGAAACATCCAGGGAGGCACCGGTTCACAGCAGCTGTAGT GAGGGCAAGGGCAGTTCCTTTTACGTCGTGTTGTTTCACAAAGTCTCGCC ATCAATATGCATGCGCGCGTGAGAAAAAAAACGTACCCGTCCATGTATAT GCGGCGGGACATCCGTCCGCGGACTGCTACTGCTGCGGAGCTACCACTTC TGTGAATACATGTAAAACAACCGCCACTTTTGTATCACTCCTACACAGCA CACTACGAGATTTCAAGTATGCAACACACCATCTGATTTCGTCTGGGCTT CTTTTCCTTGGCCATGTCTGCATGCCCGTTCTAACGCGACACCTAGCACA ACTGCTGCGTCGACCTTGTCCCTTCCCCCTACAACTCCCCCTTGCAAGAA CGCCAAGAACCTTTTTTTTTGCCAAGAACGACAAGGAAAGGACCCGCAAT TTTTTCGCCACCACTAGTGCTCGCGAATACGTGTCATGGACGTCTCCCGA TCTGTCTGCTTCCGGAGGTGACTTATACTCGCCAGCAACCTTTGCTGAAC GCTCATGATAAAACTATCCGGGAAGTCAGATTTCAACAATGACAAGCGCT CAAGGCCAGCAGGGATAGAAAGACACCATGTTGGCTGACCGTACTCCTCG GCAAAGGGCGAGGGTTGAAGCAAAGGCGCCAAAAGATACAGTTTACCTAG CCACGAAGAGAGCTGCGACCGAAGGATGGAACAGGCAGCACCGGACGCGG TTACATTCCCCAGCGTCGATCCCGTGCACATCAAGTTTTCGGAGCGCGAA GTAACGGACTGTGTCATTCCCACGAAATCCCTAGCCATTCCTCGTGGCGG CGTACTTCGTTTAACCTGGAAATGGCATGCATACCTTTACCTTCATTCTA TATTCCGGTTGTGACGCCACATCTACACGACAGAAAAAGAAATCAGTTCG AGTGGGTAAGCAACCGTGGGCCTCCACGGCAACCTATGACAGTATCTATC GCGTGCCCTCCCCCCGTTGTGGTAATCATGCATGGTTCCGGTGCGTGCAG GGTATCGGTGCCAGAAACACCGGCGGGCGGGGTGGTGATGGGGCGCTGCG TGCTGTGCGAGCGGCCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6432:936..8252+

>mRNA_Ecto-sp13_S_contig6432.17192.1 ID=mRNA_Ecto-sp13_S_contig6432.17192.1|Name=mRNA_Ecto-sp13_S_contig6432.17192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1560bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6432:936..8252+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGTGCAAGCTGCCACAGCAGAGCCTCTGTTGTACTCTCAACAAGGCC
CTCCTGCAAAACAACGGAAACGACCCTCAGTATGGACCCTTCCCTGGAGC
CCAGCGCTCGGTGTTGCGATCAGCAGCAGCAGCAGCATCCCGCAGTAGCA
GTAGCACCGCGAGAGGCAAGCGAGGAGACAGGTGGTGTCCTACTGTACTA
CAAGTACATCCCACTCGGCGAAGAGGGGAGGGCGGTTGTGAAGGATTGGT
ACGTTGAGCACTGCGGGGTCGAGCGGCTTCGAGGAAGGGTGCGCGTAGCC
CTAGACGGCGTGAACTGCACCCTGGGTGGAAGCCTAGCGGCTCTGCGCAG
GCACATCGGCAGCGTCAAGGCACACGCGGCCCTGCGAGGGCACGATATCG
ACTTCAAGCTCGCCTCCTCACGAGGGGCGAGAAACTCCCAGGCCGCCGAG
GAGTCCGGCTTCACGACGCTATCCGTGAAGGCGGTCAAGGAGGTGGTCAC
TCTCGGTACTCGGGGAGCGGGCCTGTCCCACCTCGAGGGCGGAAGACACG
TGTCCGCGCAGGAGTTCCACCGCTTGCTGCAGGAGGGGGCCGCTCGGAAG
CGGCAAGCCGACAAAGTCGTTTCCGGCGAGGGAGGAGAAAGAGTATCTTC
CGGGGGAGAACCCATCGCTGCTGCCGCCGGCGGTGTTGTTGGTTTGTCGT
CGCTAGATGCACCTGCGCCGCCGGATGATCGGGGCGGTGATCTGGCGGAG
GCAACGCCAACACGGCGAAGCGGTCACGGGACTGTCGTGGCGAGGGCGAT
GAAAGAAGGAGCTTCGACGGTCTCGGAAGGTTGCATAGGGGCGCCGGCGC
CGGCGGCAGCGCTGGCGATAGTAGGCAAACGTTTACGGGGCGGCGAAGGA
GACAAAGGGGACAAAGACGTGCCCGGGCGCAGCGACAGTGCTGGGGCTAA
CGCTGAGGATGCGACGGTGGCGAAGGAAAAGGAGGCAGTGCTGCTTGACG
TGCGAAACGTGTACGAGACCAGCATCGGGCGTTTCAGTGTGGAAGGGGTC
GAGACACTAGACCCCAAGACCCGTCAATTCAGCGACCTGCCCAAGTGGGT
GGACGAGAACGCGTACCGTCTAAGGCAAGGAGCGCGGGTGCTCATGTACT
GCACGGGAGGAGTTCGATGCGAGCTGGCGTCTGCGCTTGTCCGGCGGCAC
TGCGACGCCGACGCCACCGGCACGGACGTCTTGCAGCTCTCGGGCGGCAT
CGAACGCTACCTTCAAGCCTACCCTCACGGCGCGGAAGATCCGGGACGTG
CTAGGGAAGCACAAGCAGCAGCAGCAGCAGCAGCAACACCAGCACAAGCA
GAAGCAGCAGCAGCAGCAGCAGGGGCTGTCAGAGAAGAGGACAGCGGGGG
GGTCGCCGGTGGGGGGTTCCAGAGCGCGGGAGGGGGGCAGGAGCAGTCGC
CGGAGGGGTTCTTCCATGGCAAGAACTTCGTCTTCGACGAGAGGGTATCG
GTGCCAGAAACACCGGCGGGCGGGGTGGTGATGGGGCGCTGCGTGCTGTG
CGAGCGGCCT
back to top