mRNA_Ecto-sp13_S_contig6430.17191.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6430.17191.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 414 bits (1064), Expect = 1.130e-130 Identity = 217/241 (90.04%), Postives = 217/241 (90.04%), Query Frame = 1
Query: 1 YSCPRCKKDKKSPKLFSADNNMDPGSVPVELQRLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAAD-----------------DLHVRRARVQRALQWLIANNPYNRDIVLDNMALSQLPVDGQLSGLRTTVSGGDSERDLGPRGERGGEEDGDTPEDTESFMAPAGKSMLEDRAIEAALRRQVRESGAYVPVNAWPGMEATALNEFKTTGLASMAFPALFP 672
YSCPRCKKDKKSPKLFSADN MDPGSVPVELQ LTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAAD DLHVRRARVQRALQWLIANNPY RDIVLDN ALSQLPVDGQL GLRTTVSGGDSERDLGPRGE GGEEDGDTPEDTESFMAPAGKSMLEDRAIEAALRRQVRESGA VPVNAWPGMEATALNEFKTTGLASMAFPALFP
Sbjct: 131 YSCPRCKKDKKSPKLFSADNTMDPGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAADVPIIIIRREGQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTALSQLPVDGQLRGLRTTVSGGDSERDLGPRGEGGGEEDGDTPEDTESFMAPAGKSMLEDRAIEAALRRQVRESGADVPVNAWPGMEATALNEFKTTGLASMAFPALFP 371
BLAST of mRNA_Ecto-sp13_S_contig6430.17191.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE) HSP 1 Score: 339 bits (869), Expect = 5.480e-111 Identity = 178/202 (88.12%), Postives = 179/202 (88.61%), Query Frame = 1
Query: 1 YSCPRCKKDKKSPKLFSADNNMDPGSVPVELQRLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAAD-----------------DLHVRRARVQRALQWLIANNPYNRDIVLDNMALSQLPVDGQLSGLRTTVSGGDSERDLGPRGERGGEEDGDTPEDTESFMAPAGKSMLEDRAIEAALRRQ 555
YSCPRCKKDKKSPKLFSADN MDPGSVPVELQ LTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAAD DLHVRRARVQRALQWLIANNPY RDIVLDN A+SQLPVDGQL GLRTTVSGGDSERDLGPRGE GGEEDGDTPEDTESFMAPAGKSMLEDRAIEAALRRQ
Sbjct: 24 YSCPRCKKDKKSPKLFSADNTMDPGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAADVPIIIIRREGQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTAISQLPVDGQLRGLRTTVSGGDSERDLGPRGEGGGEEDGDTPEDTESFMAPAGKSMLEDRAIEAALRRQ 225
BLAST of mRNA_Ecto-sp13_S_contig6430.17191.1 vs. uniprot
Match: A0A6H5JBH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH9_9PHAE) HSP 1 Score: 246 bits (627), Expect = 2.750e-79 Identity = 135/183 (73.77%), Postives = 141/183 (77.05%), Query Frame = 1
Query: 64 MDPGSVPVELQRLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAAD-----------------DLHVRRARVQRALQWLIANNPYNRDIVLDNMALSQLPVDGQLSGLRTTVSGGDSERDLGPRGERGGEEDGDTPEDTESFMAPAGKSMLEDRAIEAALRRQVR 561
MDPGSVPVELQ LTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAAD DLHVRRARVQRALQWLIANNPY RDIVLDN ALSQLPVDGQL GLRTTVSGGDSERDLGPRGE GGEEDGD+ +P K+ L++ L + R
Sbjct: 1 MDPGSVPVELQGLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAADVPIIIIRREGQEPGQHKDLHVRRARVQRALQWLIANNPYYRDIVLDNTALSQLPVDGQLRGLRTTVSGGDSERDLGPRGEGGGEEDGDSDRIGNLGNSPTMKARLQEEVRLGELAQSTR 183
BLAST of mRNA_Ecto-sp13_S_contig6430.17191.1 vs. uniprot
Match: UPI00106C8F71 (uncharacterized protein LOC114545138 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C8F71) HSP 1 Score: 156 bits (395), Expect = 4.140e-43 Identity = 102/249 (40.96%), Postives = 139/249 (55.82%), Query Frame = 1
Query: 1 YSCPRCKKDKKSPKLFSADNNMDPGSVPVELQRLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALP------------RLAADDLH----VRRARVQRALQWLIANNPYNRDIVLDNMALSQLPVDGQLSGLRTTVSGGDSERDLGPRGERGGEEDGDTPEDTESFMAPAGKSMLEDRAIE-AALRRQVRESGAYV--------PVNAWPGMEATALNEFKTTGLASMAFPALFP 672
+ C RC++DKKSPK FS N+MDPG+VP +L+ LTQ EEMLI+R CPIM+V GGQ GY GHV+N+ QDI + LP R AD+ H VRR +V A+ WL NNP+ +DI +D + +LP +G LR + D+E + E +G E S A + +L + + +R++ R+ GA + P++ WP E A+NEFKT GLASMAFP LFP
Sbjct: 34 FVCYRCQRDKKSPKNFSTGNDMDPGTVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRQGADETHKDFTVRRHKVFEAISWLKTNNPFFKDIEIDRDIIQRLPENGVPEELRYIID--DNELPVHV------ENEGPPQEPVMSANATVEELVLGNGSTSFIPMRQRQRKDGAAIQDAVNEVDPLD-WPSTEGNAVNEFKTDGLASMAFPTLFP 273
BLAST of mRNA_Ecto-sp13_S_contig6430.17191.1 vs. uniprot
Match: A0A7D9LMQ1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LMQ1_PARCT) HSP 1 Score: 155 bits (391), Expect = 1.230e-41 Identity = 103/253 (40.71%), Postives = 132/253 (52.17%), Query Frame = 1
Query: 1 YSCPRCKKDKKSPKLFSADNNMDPGSVPVELQRLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAAD----------------DLHVRRARVQRALQWLIANNPYNRDIVLDNMALSQLPVDGQLSGLRTTVSGGDSERDLGPRGERGGEEDGDTPED--------TESFMAPAGKSML-----EDRAIEAALRRQVRESGAYVPVNAWPGMEATALNEFKTTGLASMAFPALFP 672
Y C RCK+DKKSPK FSA+N+MDPG VP +L+ LTQ EEMLI+R CPIMRV GGQ GY GHV+N+ QDI + LP AD D VRR +V A+ WL NNP+ ++I +D + LP +G LR + E +L E G P+D E + +G + R AA++ V E P++ WP E +NEFKT GLA+MAFP LFP
Sbjct: 135 YICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDELRYVID----ENELSVHVENEG-----PPQDPVMSANASVEELVLGSGSTSFIPMGQRQRKEGAAIQDAVNEVD---PLD-WPSTEGNLINEFKTDGLATMAFPTLFP 374
BLAST of mRNA_Ecto-sp13_S_contig6430.17191.1 vs. uniprot
Match: UPI00106CBCF8 (uncharacterized protein LOC114518711 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CBCF8) HSP 1 Score: 159 bits (403), Expect = 1.520e-41 Identity = 105/249 (42.17%), Postives = 138/249 (55.42%), Query Frame = 1
Query: 1 YSCPRCKKDKKSPKLFSADNNMDPGSVPVELQRLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALP------------RLAADDLH----VRRARVQRALQWLIANNPYNRDIVLDNMALSQLPVDGQLSGLRTTVSGGDSERDLGPRGERGGEEDGDTPEDTESFMAPAGKSMLEDRAIE-AALRRQVRESGAYV--------PVNAWPGMEATALNEFKTTGLASMAFPALFP 672
+ C RCK+DKKSPK FSA N+MDPG VP +L+ LTQ EEMLI+R CPIM+V GGQ GY GHV+N+ QDI + LP R AD+ H VRR RV A+ WL NNP+ +DI +D + LP +G LR + D+E + E +G E S A + +L + + +R++ R+ GA + P++ WP E A+NEFKT GLASMAFP LFP
Sbjct: 320 FVCYRCKRDKKSPKNFSAGNDMDPGIVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRQGADETHKDFTVRRHRVLEAILWLKTNNPFFKDIEIDRDVIQSLPENGIPKELRYVID--DNELSVHV------ENEGPPQEPVMSANATVEELVLGNGSTSFIPMRQRQRKDGAAIQDAVNEVDPLD-WPSTEGNAVNEFKTDGLASMAFPTLFP 559
BLAST of mRNA_Ecto-sp13_S_contig6430.17191.1 vs. uniprot
Match: A0A1X7VMZ5_AMPQE (Helitron_like_N domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VMZ5_AMPQE) HSP 1 Score: 155 bits (393), Expect = 9.770e-41 Identity = 98/240 (40.83%), Postives = 131/240 (54.58%), Query Frame = 1
Query: 7 CPRCKKDKKSPKLFSADNNMDPGSVPVELQRLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAAD---------------DLHVRRARVQRALQWLIANNPYNRDI--VLDNMALSQLPVDGQLSGLRTTVSGGDSERDLGPRGERGGEEDGDTPED-TESFMAPAGKSMLEDRAIEAALRRQVRESGAYVPVNAWPGMEATALNEFKTTGLASMAFPALFP 672
C RC DK PK +S+ NNMDPG VP++LQ L+QTEEMLI+ P+M + L GQ GY GHV+N QD+ A LPRL ++ D VRR V+ AL WL+ANN Y R I +D L+ LP DG L+ LRT V +S+ ++ P +D T E + SF+ A E IE A++ + +++ WP + T +NEF+T G SMAFP LFP
Sbjct: 38 CSRCAHDKSIPKRYSSANNMDPGPVPLQLQSLSQTEEMLISAVMPVMSIYRLPHGQYGYSGHVINFPQDVHGFATTLPRLPSEVDILVVRKEKEQTHRDFRVRRRAVEEALTWLLANNIYYRSIGVSVDQNTLASLPEDGDLTDLRT-VQPAESQGEVTP-------DDVSTEEHYSSSFVPNAAPPATERETIEQAVQSLGQPQSSHLM---WPSIGGTPINEFQTEGYFSMAFPTLFP 266
BLAST of mRNA_Ecto-sp13_S_contig6430.17191.1 vs. uniprot
Match: A0A6S7GE38_PARCT (Helitron_like_N domain-containing protein n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GE38_PARCT) HSP 1 Score: 156 bits (395), Expect = 1.000e-40 Identity = 103/250 (41.20%), Postives = 135/250 (54.00%), Query Frame = 1
Query: 1 YSCPRCKKDKKSPKLFSADNNMDPGSVPVELQRLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAAD----------------DLHVRRARVQRALQWLIANNPYNRDIVLDNMALSQLPVDGQLSGLRTTVSGGDSERDLGPRGERGGEEDGDTPED-TESFMAPAGKSMLEDRAIE-AALRRQVRESGAYV--------PVNAWPGMEATALNEFKTTGLASMAFPALFP 672
Y C RCK+DKKSPK FSA+N+MDPG VP +L+ LTQ EEMLI+R CPIMRV GGQ GY GHV+N+ QDI + LP AD D VRR +V A+ WL NNP+ ++I +D + LP +G LR + E +L E G P+D S A + +L + +R++ R+ GA + P++ WP E +NEFKT GLA+MAFP LFP
Sbjct: 146 YICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDELRYVID----ENELSVHVENEG-----PPQDPVMSANASVEELVLGSGSTSFIPMRQRQRKEGAAIQDAVNEVDPLD-WPSTEGNLINEFKTDGLATMAFPTLFP 385
BLAST of mRNA_Ecto-sp13_S_contig6430.17191.1 vs. uniprot
Match: A0A7D9LNP2_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LNP2_PARCT) HSP 1 Score: 156 bits (394), Expect = 1.210e-40 Identity = 103/250 (41.20%), Postives = 135/250 (54.00%), Query Frame = 1
Query: 1 YSCPRCKKDKKSPKLFSADNNMDPGSVPVELQRLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAAD----------------DLHVRRARVQRALQWLIANNPYNRDIVLDNMALSQLPVDGQLSGLRTTVSGGDSERDLGPRGERGGEEDGDTPED-TESFMAPAGKSMLEDRAIE-AALRRQVRESGAYV--------PVNAWPGMEATALNEFKTTGLASMAFPALFP 672
Y C RCK+DKKSPK FSA+N+MDPG VP +L+ LTQ EEMLI+R CPIMRV GGQ GY GHV+N+ QDI + LP AD D VRR +V A+ WL NNP+ ++I +D + LP +G LR + E +L E G P+D S A + +L + +R++ R+ GA + P++ WP E +NEFKT GLA+MAFP LFP
Sbjct: 303 YICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPHELRYVID----ENELSVHVENEG-----PPQDPVMSANASVEELVLGSGSTSFIPMRQRQRKEGAAIQDAVSEVDPLD-WPSTEGNLINEFKTDGLATMAFPTLFP 542
BLAST of mRNA_Ecto-sp13_S_contig6430.17191.1 vs. uniprot
Match: A0A6S7I194_PARCT (ATP-dependent DNA helicase n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I194_PARCT) HSP 1 Score: 157 bits (396), Expect = 2.370e-40 Identity = 103/250 (41.20%), Postives = 136/250 (54.40%), Query Frame = 1
Query: 1 YSCPRCKKDKKSPKLFSADNNMDPGSVPVELQRLTQTEEMLIARCCPIMRVLHLKGGQLGYGGHVVNVAQDISTLAAALPRLAAD----------------DLHVRRARVQRALQWLIANNPYNRDIVLDNMALSQLPVDGQLSGLRTTVSGGDSERDLGPRGERGGEEDGDTPED-TESFMAPAGKSMLEDRAIE-AALRRQVRESGAYV--------PVNAWPGMEATALNEFKTTGLASMAFPALFP 672
Y C RCK+DKKSPK FSA+N+MDPG VP +L+ LTQ EEMLI+R CPIMRV GGQ GY GHV+N+ QDI + LP AD D VRR +V A+ WL NNP+ ++I +D + LP +G LR + E +L E G P+D S A + +L + + +R++ R+ GA + P++ WP E +NEFKT GLA+MAFP LFP
Sbjct: 300 YICYRCKRDKKSPKKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDELRYVID----ENELSVHVENEG-----PPQDPVMSANASVEELVLGNGSTSFIPMRQRQRKEGAAIQDAVNEVDPLD-WPSTEGNLINEFKTDGLATMAFPTLFP 539 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6430.17191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6430.17191.1 >prot_Ecto-sp13_S_contig6430.17191.1 ID=prot_Ecto-sp13_S_contig6430.17191.1|Name=mRNA_Ecto-sp13_S_contig6430.17191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp YSCPRCKKDKKSPKLFSADNNMDPGSVPVELQRLTQTEEMLIARCCPIMRback to top mRNA from alignment at Ecto-sp13_S_contig6430:38..760- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6430.17191.1 ID=mRNA_Ecto-sp13_S_contig6430.17191.1|Name=mRNA_Ecto-sp13_S_contig6430.17191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6430:38..760- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6430:38..760- >mRNA_Ecto-sp13_S_contig6430.17191.1 ID=mRNA_Ecto-sp13_S_contig6430.17191.1|Name=mRNA_Ecto-sp13_S_contig6430.17191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6430:38..760- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |