mRNA_Ecto-sp13_S_contig64220.17184.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64220.17184.1
Unique NamemRNA_Ecto-sp13_S_contig64220.17184.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig64220.17184.1 vs. uniprot
Match: D7G970_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G970_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.530e-18
Identity = 47/69 (68.12%), Postives = 51/69 (73.91%), Query Frame = 2 
Query:    5 AGTILLVGITPCTRSPPTASTPAPPTLTKRAGVLRRHRQLLLGARTPRKRWRLSWGTTMTNGTPASWNS 211
            AGT LLV IT CTRS PTASTPAP TLTKRA        ++  ARTP +R R SWGTTMT+GTPASWNS
Sbjct:   19 AGTSLLVEITFCTRSSPTASTPAPRTLTKRAAGTTPPPSIVTRARTPGQRRRPSWGTTMTSGTPASWNS 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64220.17184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G970_ECTSI2.530e-1868.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64220contigEcto-sp13_S_contig64220:30..243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score63.9
Seed ortholog evalue3.4e-08
Seed eggNOG ortholog2880.D7FRS1
Model size216
KEGG koko:K22017
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4157@1,KOG4157@2759,KOG4291@1,KOG4291@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003340.1
Cds size213
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463888.0246363-CDS-Ecto-sp13_S_contig64220:29..2421681463888.0246363-CDS-Ecto-sp13_S_contig64220:29..242Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64220 30..242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64220.17184.1prot_Ecto-sp13_S_contig64220.17184.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64220 30..242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64220.17184.1

>prot_Ecto-sp13_S_contig64220.17184.1 ID=prot_Ecto-sp13_S_contig64220.17184.1|Name=mRNA_Ecto-sp13_S_contig64220.17184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
QCWYDSSGGDHALHEESTDCINACSADADETCRCTTPPPSIVTRGENAPK
AVASFVGYYHDERDACIMEFA
back to top

mRNA from alignment at Ecto-sp13_S_contig64220:30..243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64220.17184.1 ID=mRNA_Ecto-sp13_S_contig64220.17184.1|Name=mRNA_Ecto-sp13_S_contig64220.17184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=214bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64220:30..243+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGCTGGTACGATTCTTCTGGTGGGGATCACGCCCTGCACGAGGAGTC
CACCGACTGCATCAACGCCTGCTCCGCCGACGCTGACGAAACGTGCCGGT
GTACTACGCCGCCACCGTCAATTGTTACTCGGGGCGAGAACGCCCCGAAA
GCGGTGGCGTCTTTCGTGGGGTACTACCATGACGAACGGGACGCCTGCAT
CATGGAATTCGCGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64220:30..243+

>mRNA_Ecto-sp13_S_contig64220.17184.1 ID=mRNA_Ecto-sp13_S_contig64220.17184.1|Name=mRNA_Ecto-sp13_S_contig64220.17184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64220:30..243+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTGCTGGTACGATTCTTCTGGTGGGGATCACGCCCTGCACGAGGAGTC
CACCGACTGCATCAACGCCTGCTCCGCCGACGCTGACGAAACGTGCCGGT
GTACTACGCCGCCACCGTCAATTGTTACTCGGGGCGAGAACGCCCCGAAA
GCGGTGGCGTCTTTCGTGGGGTACTACCATGACGAACGGGACGCCTGCAT
CATGGAATTCGCG
back to top