mRNA_Ecto-sp13_S_contig6422.17183.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6422.17183.1
Unique NamemRNA_Ecto-sp13_S_contig6422.17183.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6422.17183.1 vs. uniprot
Match: D7G2J8_ECTSI (AMP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2J8_ECTSI)

HSP 1 Score: 508 bits (1307), Expect = 8.270e-181
Identity = 274/285 (96.14%), Postives = 277/285 (97.19%), Query Frame = 1
Query:    1 MQSLARATGRAAEHAGCLRPRNVASRSRRGAAVALKAATEATAAGDMPLTTQAGRFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAAAVEKILEESGAAVVLVEESVVPSLTEAVPELRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAAVMHFRSALLYTPPVSPLAKVNGQQIKESAPLHTIFSEGTGGTPEKGKTLSHAEVVRLASWPTIAAILKKEYVEV 855
            MQSLARATGRAAEHAGCLRPRNVAS SRRGAAVALKAAT A AAGDMPLTTQ GRFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKL SAAAVEKILEESGAAVVLVEESVVPSL EAVPELRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAA++HFRSALLYTPPVSPLA+VNGQ IKESAPLHTIFSEGTGGTPEKGKTLSHAEVV LASWPTIAAILKKEYVEV
Sbjct:    1 MQSLARATGRAAEHAGCLRPRNVASLSRRGAAVALKAATAAAAAGDMPLTTQ-GRFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLGSAAAVEKILEESGAAVVLVEESVVPSLIEAVPELRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAALLHFRSALLYTPPVSPLAQVNGQ-IKESAPLHTIFSEGTGGTPEKGKTLSHAEVVSLASWPTIAAILKKEYVEV 283          
BLAST of mRNA_Ecto-sp13_S_contig6422.17183.1 vs. uniprot
Match: A0A7S3XZ81_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ81_HETAK)

HSP 1 Score: 168 bits (426), Expect = 2.790e-47
Identity = 91/236 (38.56%), Postives = 139/236 (58.90%), Query Frame = 1
Query:  160 GRFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAAAVEKILEESGAAVVLVEESVVPS-----LTEAVPELRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAAVMHFRSALLYTPPVSPLAKVNGQQIKESAPLHTIFSEGTGGTPEKGKTLSHAEVVRLASWPTIAAILKKEYVE 852
            GR L  +AS+++  +AE   KEAVRY   N+KWTR DV+  ++ALA GLLE  C  GD++A+WLPECSEKHV QLAAA+ G+V A+ D  + +  A+   L +SGA V++    +        L +A+PEL  Y  ++G PF S+  P+L+L IHTG +  A   +F+   +  P       V    +K+  PL+  +++ +GG   KG+ ++H   +    W  + +IL K+Y+E
Sbjct:   44 GRSLASIASQINSAVAENEYKEAVRYTHKNIKWTRKDVQFQTDALANGLLEAACNPGDSIAVWLPECSEKHVTQLAAAKAGLVFADFDLSIDTPEALGDALADSGAKVLIFNSELDAVNCGRVLFDAIPELSGYYNNTGAPFHSSSFPNLKLMIHTGYDSLAGFHNFKHLPVPHPATGGKLGVILPHLKDDTPLYVKYTKDSGGKATKGEVMTHGTALSSKEWSVVKSILDKQYIE 279          
BLAST of mRNA_Ecto-sp13_S_contig6422.17183.1 vs. uniprot
Match: A0A835Z6E9_9STRA (AMP-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E9_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.990e-45
Identity = 95/238 (39.92%), Postives = 143/238 (60.08%), Query Frame = 1
Query:  154 QAGRFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAAAVEKILEESGAAVVLVEESVVPSLTEAVPELRHYSTD---SGLPFRSAKLPSLRLCIHTGLEREAAVMHFRSALLYTPPVSPLAKVNGQQIKESAPLHTIFSEGTGGTPEKGKTLSHAEVV-RLASWPTIAAILKKEYVEV 855
            Q  R    +A+ ++ +  E+PMK+ VR+ K N  WTR+++K  SEALA G  +LGC+ GD +A+WLP+ +EK   QLAAA  G  +  VDP L      +K+L E+GA + +V E    SL +A+PE+  Y+ +   SG  FRS +   LR C HTG + E+  + FR+ L+Y   +SP+ ++    I + +PL   +SE   G    G T+SH +V+ + +SW  +A+IL KEYVEV
Sbjct:   21 QQTRSASCVATVLNDLTEELPMKDTVRFTKHNRLWTRAELKLQSEALATGWYDLGCRTGDAVAIWLPDYAEKIACQLAAAIGGYKIVIVDPALDRVEHFDKVLFETGARIAVVTEKHNESLKKAIPEMEFYAANHDFSGRHFRSRRFTKLRFCSHTGFDLESGFLQFRNMLVYHMDISPIPQLQAA-ITDDSPLSVTYSE-KNGEAVAGPTVSHKDVLAKESSWAVVASILNKEYVEV 256          
BLAST of mRNA_Ecto-sp13_S_contig6422.17183.1 vs. uniprot
Match: A0A7S2XZH5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZH5_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.550e-42
Identity = 89/232 (38.36%), Postives = 145/232 (62.50%), Query Frame = 1
Query:  178 LASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECS-EKHVAQLAAARIGMVVAEVDPKLASAAAVEKILEESGAAVVLVEE-----SVVPSLTEAVPELRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAAVMHFRSALLYTPPVSPLAKVNGQQIKESAPLHTIFSEGTGGTPEKGKTLSHAEVVRLASWPTIAAILKKEYVEV 855
            +A+++  V    PMKEAVRY+  N K TR D+ ++S AL+ GLLEL     DTM +WLP+ S EKHVA LAAA++G+ VA+V   +    A+ ++L ++GA +++++      + + +L +AVPEL H++   G+PF S  LP LR+  HTG +      +F+  L++ P  S + K+    +K+  PL+T +++G  G   KG+TL++ +V+  ++W   +AIL  +YVEV
Sbjct:   32 IAAQLKDVTDANPMKEAVRYQDKNFKCTREDIDAYSYALSNGLLELCVAPNDTMVLWLPDDSAEKHVAMLAAAKMGVTVADVSQDVQKPEAIRQVLSDTGARMIMIDTEHPDYNYLHALVKAVPELLHFNDKHGVPFHSHTLPKLRMFFHTGYDVIKGFCNFKHVLMFNPGESQVPKIL-PFLKDDTPLYTPYTKGPDGMAVKGETLTNGQVLSHSAWKVHSAILGGQYVEV 262          
BLAST of mRNA_Ecto-sp13_S_contig6422.17183.1 vs. uniprot
Match: A0A7S2CY20_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CY20_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.120e-29
Identity = 79/241 (32.78%), Postives = 130/241 (53.94%), Query Frame = 1
Query:  142 PLTTQAGRFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLP-ECSEKHVAQLAAARIGMVVAEVDPKLASAAAVEKILEESGAAVVLVEESV-----VPSLTEAVPELRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAAVMHFRSALLYTPPVSPLAKVNGQQIKESAPLHTIFSEGTGGTPEKGKTLSHAEVVRLASWPTIAAILKKEY 846
            P    A  F  G+  K+  ++   PM E V++ K NLKW+ +DVK +S+A + GL++ G KAGD++A+WLP + +E    + AAARIG+++ E+D  ++ A A+  IL E+    ++ +           L E +PEL+HY    G  FRS  +PS++  +H  ++    V +F+  ++Y P   P        +  SAPL   +   T  T    + LS  +V+   +WPT+ AIL K++
Sbjct:   28 PHVAAARSFSVGIQEKLATLVDAHPMMETVQFNKQNLKWSMADVKRYSDAFSSGLVDNGWKAGDSLAVWLPADTAESLTVKFAAARIGLLLVEIDMSVSEADAIRSILVENNCKGLIYDLEAGDRHNTDILKEIMPELKHYDDKFGDQFRSRVVPSMKFIMHVNMDLIPGVGNFKYQMVYDP--RPALIPPAPDL--SAPLTVNY---TSDTLSGARVLSQEDVMTEQAWPTVGAILDKKF 261          
BLAST of mRNA_Ecto-sp13_S_contig6422.17183.1 vs. uniprot
Match: A0A7S2WCA9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCA9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.710e-27
Identity = 75/241 (31.12%), Postives = 132/241 (54.77%), Query Frame = 1
Query:  142 PLTTQAGRFLG-GLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLP-ECSEKHVAQLAAARIGMVVAEVDPKLASAAAVEKILEESGAAVVLVEESVVPSLTE-----AVPELRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAAVMHFRSALLYTPPVSPLAKVNGQQIKESAPLHTIFSEGTGGTPEKGKTLSHAEVVRLASWPTIAAILKKE 843
            PL+T AG  +   LA + +    ++P+KEA+ +K  N+KW+  D+K HS+ALA GLLELG ++GD +A+W+  +C E+ V + A++R G+ + E+D  ++   ++ KIL E+ A  ++ +  +     +     A+PEL  +    G  FRS  +PS+ L  HTG++    V++ +  L Y  P S            ++ +  + S G+GG      +L   E ++ A W  ++ IL++E
Sbjct:   22 PLSTSAGSAISQNLAQRCE----DLPLKEAIAFKVNNVKWSYQDLKEHSDALAAGLLELGWRSGDVLAVWVESDCQEQIVTRFASSRAGLGLVEIDAGVSDPESLRKILNETNAKGLVFDPVMGDRYNQDIVEAALPELASFDDRFGGRFRSRAVPSIGLVAHTGMDLVPGVVNLKHLLAYDAPESRFNST-------TSGMKQVVSYGSGGG---ATSLKEDEALQSAPWNLVSGILRQE 248          
BLAST of mRNA_Ecto-sp13_S_contig6422.17183.1 vs. uniprot
Match: K3X788_GLOUD (AMP-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X788_GLOUD)

HSP 1 Score: 102 bits (254), Expect = 9.560e-22
Identity = 73/235 (31.06%), Postives = 124/235 (52.77%), Query Frame = 1
Query:  121 ATAAGDMPLTTQAGRFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAAAVEKILEESGAAVVLVEESVVP-SLTEAV----PELRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAAVMHFRSALLYTPPVSPLAKVNGQQIKESAPLHTIFSEGTGGTPEKGKTLSHAEVVRLAS 810
            A  A  + L  +A   +GG    +D+ +  +P KEA+R  K +L+W+  ++ +  + +A G   L  + G+ +A+WLP  +E  + QLAAA+ G+ +A +DPK+++A  +E IL +S A+ +L E  +   + TE V    PEL  Y  +  L FR     +L   I TG E    +  F   ++  P    +  V  Q + E  PL   +S+  G  P+KG+ L+H +V++ A+
Sbjct:   14 AAPASKLALGARAASTVGGA---LDEAVERLPHKEALRSLKQDLRWSFKELNAIVDEVANGFHSLKFEPGNVLAVWLPNNAESVITQLAAAKAGVTLAVIDPKVSTAEELEYILHDSKASGLLFEPKIAGRNQTEIVQGLFPELATYRENFRL-FRPKNFRNLHTVISTGFEPVEGIAQFHQVMVNAPEKHEVETVK-QVVNEKTPLAVSYSKVNGQNPKKGEVLTHGDVLKRAA 243          
BLAST of mRNA_Ecto-sp13_S_contig6422.17183.1 vs. uniprot
Match: A0A7X0H2B5_9SPHN (Fatty-acyl-CoA synthase n=2 Tax=unclassified Sphingopyxis TaxID=2614943 RepID=A0A7X0H2B5_9SPHN)

HSP 1 Score: 90.5 bits (223), Expect = 9.520e-17
Identity = 66/207 (31.88%), Postives = 109/207 (52.66%), Query Frame = 1
Query:  193 DKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAAAVEKILEESGAAVVLVEES-----VVPSLTEAVPELRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAAVMHFRSALLYTPPVSPLAKVNGQQIKESAPLHTIFSEGTGGTPEKGKTLSHAEVV 798
            D+ +A  P  EA+  +  +++W+  ++K+  +A+A GLLE G K GD + +W P C+E  V QLA A+ G+++  ++P     A ++  L + G   +++  S      +  L E  PEL    T +    R+A+LP LRL I  G    A  + F +  L +    PLA V   ++  + P++  F+ GT G P KG TLSH  ++
Sbjct:   24 DRTVARHPDSEALVVRHQSVRWSWRELKARVDAVAAGLLERGLKPGDRVGIWAPNCAEWVVVQLATAKAGLILVNINPAY-RVAELDYALNKVGCTALILAPSHKSSDYIAMLGELAPEL---PTSTPGMLRAARLPDLRLVIALGGRDHAGCLPFDA--LASADTGPLADV---RLDPAMPVNIQFTSGTTGFP-KGATLSHRNIL 220          
BLAST of mRNA_Ecto-sp13_S_contig6422.17183.1 vs. uniprot
Match: G5A2G9_PHYSP (AMP-binding domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G5A2G9_PHYSP)

HSP 1 Score: 85.9 bits (211), Expect = 9.320e-16
Identity = 63/221 (28.51%), Postives = 116/221 (52.49%), Query Frame = 1
Query:  163 RFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAAAVEKILEESGAAVVLVE-ESVVPSLTEAV----PELRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAAVMHFRSALLYTPPVSPLA-KVNGQQIKESAPLHTIFSEGTGGTPEKGKTLSHAEVVRLA 807
            R    + + +D+ +A +P KEA+R  K +++W+  ++ +  + LA G L+L  +AGD +A+WLP  +E  + QLAAAR G+ +A ++P+++ A  +  IL +S AA ++ E +    + TE V    PEL  +     + FR  +   L   I T  E    +++    ++      P A K   + + +  PL   +S+  G  P+K   L+H ++++ A
Sbjct:   18 RAASTVGAALDEAVARLPHKEALRSVKQDVRWSFKELNAAVDELASGFLDLQFRAGDVVALWLPNSAENVLTQLAAARAGLTLAVIEPEVSQAEELAFILHDSQAAGLVFEPKQAGRNQTEIVQGLFPELATFRERMEV-FRPKQFRHLHSVITTSWEPVEGMINLNGMMVNN--AEPYAMKAVTKTLSDKTPLAVTYSKVEGQNPKKSAVLTHGDLLKRA 235          
BLAST of mRNA_Ecto-sp13_S_contig6422.17183.1 vs. uniprot
Match: UPI001FF5FBB5 (AMP-binding protein n=1 Tax=Sphingobium sp. MAH-33 TaxID=2933566 RepID=UPI001FF5FBB5)

HSP 1 Score: 81.3 bits (199), Expect = 1.300e-13
Identity = 64/215 (29.77%), Postives = 106/215 (49.30%), Query Frame = 1
Query:  178 LASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALACGLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAAAVEKILEESGAAVVLVEESVVPSLTEAVPE--LRHYSTDSGLPFRSAKLPSLRLCIHTGLEREAAVMHFR--SALLYTPPVSPLAKVNGQQIKESAPLHTIFSEGTGGTPEKGKTLSHAEVVRLAS 810
            +   +D+     P K+A+  + GN++++ S++K+ ++  A GLL LG K GD + +W P C+E  +AQLA AR GM++  ++P     A +E  L +     ++   S   S   A+ E  + H+    G    S  LP+ R  I  G E     + F   + L      + LA +    +K   P++  F+ GT G P KG TLSH  ++  A+
Sbjct:   22 IGEALDRAAQRWPDKDALVARHGNIRYSWSELKAATDDFAAGLLALGVKPGDRVGIWAPNCAEWTIAQLATARAGMILVNINPAY-RVAELEYTLGKVEVRALICAASFKNSDYLAMTESFVTHFGEQPG-EIVSVDLPAFRYAIKIGGEPRPGWLDFSEVAGLRTAASETELASI-AATLKADDPINIQFTSGTTGAP-KGVTLSHRNILNNAA 232          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6422.17183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2J8_ECTSI8.270e-18196.14AMP-binding domain-containing protein n=2 Tax=Ecto... [more]
A0A7S3XZ81_HETAK2.790e-4738.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z6E9_9STRA6.990e-4539.92AMP-binding domain-containing protein n=1 Tax=Trib... [more]
A0A7S2XZH5_9STRA2.550e-4238.36Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2CY20_9STRA1.120e-2932.78Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2WCA9_9STRA3.710e-2731.12Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K3X788_GLOUD9.560e-2231.06AMP-binding domain-containing protein n=1 Tax=Glob... [more]
A0A7X0H2B5_9SPHN9.520e-1731.88Fatty-acyl-CoA synthase n=2 Tax=unclassified Sphin... [more]
G5A2G9_PHYSP9.320e-1628.51AMP-binding domain-containing protein n=3 Tax=Phyt... [more]
UPI001FF5FBB51.300e-1329.77AMP-binding protein n=1 Tax=Sphingobium sp. MAH-33... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6422contigEcto-sp13_S_contig6422:478..4304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score510.4
Seed ortholog evalue5.5e-142
Seed eggNOG ortholog2880.D7G2J8
Model size858
KEGG rclassRC00002,RC00004,RC00014,RC00017
KEGG koko:K00666,ko:K01897,ko:K14156
KEGG TC4.C.1.1
KEGG ReactionR01021,R01280,R01468
KEGG Pathwayko00061,ko00071,ko00564,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,ko05231,map00061,map00071,map00564,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920,map05231
KEGG ModuleM00086,M00090,M00092
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.o-succinylbenzoate-CoA ligase activity
EggNOG OGsCOG0318@1,KOG1177@2759
Ec32 ortholog descriptionAMP-dependent synthetase/ligase
Ec32 orthologEc-11_002500.1
EC2.7.1.32,2.7.1.82,6.2.1.3
Cds size858
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463887.9500637-CDS-Ecto-sp13_S_contig6422:477..6341681463887.9500637-CDS-Ecto-sp13_S_contig6422:477..634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6422 478..634 +
1681463887.9642136-CDS-Ecto-sp13_S_contig6422:1566..17331681463887.9642136-CDS-Ecto-sp13_S_contig6422:1566..1733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6422 1567..1733 +
1681463887.9755833-CDS-Ecto-sp13_S_contig6422:2211..23671681463887.9755833-CDS-Ecto-sp13_S_contig6422:2211..2367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6422 2212..2367 +
1681463887.9856632-CDS-Ecto-sp13_S_contig6422:3157..33791681463887.9856632-CDS-Ecto-sp13_S_contig6422:3157..3379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6422 3158..3379 +
1681463887.9955857-CDS-Ecto-sp13_S_contig6422:4148..43041681463887.9955857-CDS-Ecto-sp13_S_contig6422:4148..4304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6422 4149..4304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6422.17183.1prot_Ecto-sp13_S_contig6422.17183.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6422 478..4304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6422.17183.1

>prot_Ecto-sp13_S_contig6422.17183.1 ID=prot_Ecto-sp13_S_contig6422.17183.1|Name=mRNA_Ecto-sp13_S_contig6422.17183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=286bp
MQSLARATGRAAEHAGCLRPRNVASRSRRGAAVALKAATEATAAGDMPLT
TQAGRFLGGLASKVDKVLAEIPMKEAVRYKKGNLKWTRSDVKSHSEALAC
GLLELGCKAGDTMAMWLPECSEKHVAQLAAARIGMVVAEVDPKLASAAAV
EKILEESGAAVVLVEESVVPSLTEAVPELRHYSTDSGLPFRSAKLPSLRL
CIHTGLEREAAVMHFRSALLYTPPVSPLAKVNGQQIKESAPLHTIFSEGT
GGTPEKGKTLSHAEVVRLASWPTIAAILKKEYVEV*
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mRNA from alignment at Ecto-sp13_S_contig6422:478..4304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6422.17183.1 ID=mRNA_Ecto-sp13_S_contig6422.17183.1|Name=mRNA_Ecto-sp13_S_contig6422.17183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3827bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6422:478..4304+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTCCTTGGCCAGGGCGACCGGAAGAGCGGCGGAGCACGCTGGCTG CTTGAGGCCACGAAATGTCGCGTCGCGCAGCAGGCGGGGCGCTGCGGTTG CGCTAAAGGCTGCGACGGAAGCAACAGCAGCGGGGGACATGCCGCTGACA ACTCAGGGTGCGTGTCTCGTCTCTCTACCAAGAATGTCTGCCAGTGAGCA CAGCAGCCTCATGACCACCCTGCGTGGCGTAGGTCGGCCTTCACCCCTTT AGAGTTTGAACTACTTGGCATGCAGTTGTACATACGTCCTTTGCACGTTC CTTTAACCGTTTCGCTGGTGCTTTGGGTACGAGAAACTTGTTGGCGGGCG TTTGAAGTTCTGCTGTGGGAGGCAATGTGTGCATGCTCCCGTTTGTTGTG CAGGAGGCAACCACATATGTTGATGGGCTACAAGAAGTCGTCTCGACAAG AACTCTTCGAAGCCGCACGAGCCACAGTTTCAAAGCCTCGATGACGTGAT ATGCGCGGTATGTCCGGAGCAGATTTCCACCCACTCGGTGCCCTTCCGAT CCATACAGCATAGATCCGATCCATCCATCCATCCATCCATCCTTTTTCGC AGAAGAGCAGTCATGTTTGATGTGTGTATACTCCTCGTCCAAGTAAAACA GGCATGGCTTGACTGCTGTGGAATCTGCTTGTACAATGCGCCTGCCCTCG ACGAACATATGCTTCGCGTCCTACATGCACACACTTACGCATAACTCCGC ACTCGTTTGTCTTCTGGCCCGCTAGCCGCGTCTTGTCTGCGCCAGAAGAG GCGACGCAGAGTAGAAAATCGGTGCCCTGGTTTAGTCCCCATTCGCTCCC CCCTTCAGCGGTATTTGGGGATGGGGGGCCCGGCAGCCATTATTGCTCGA CCACACGCGGTACGTGTCGCACATGCTGTTTCATTTTCTGCCCGAGACAT CATAGGATACAAAGCTGAAGTTCGTTTACTACTCTGTTTCATTGTCTGCC CGAGACATCATAGTAGATAAAGCTGAAGCTCGTTTTATCCTTTTTTTTGG GCGCGCCGGGTGGGCTTGCGGGGGGGGGGGTGGGGGGAGCAGGTCGTTTT TTGGGAGGGCTGGCGTCGAAGGTGGATAAGGTGCTCGCGGAGATTCCGAT GAAGGAGGCCGTGCGCTACAAGAAGGGAAACCTGAAGTGGACTAGATCCG ACGTGAAGAGCCACTCTGAGGCACTCGCGTGCGGCCTTCTTGAGCTGGGG TGCAAGGTGAGGGAACGCCGAGGACGGTGATTACCATGAGAGAGACGGAC GGCTGCTTGAACTAGAACAGAAGTAATTGAAAGGCTGTTTCCGCTTGTGT TTCCGTATACGCCTCTGATTTCCTGTTTGGTTTTTGAGCGCCGGGGCGTT GCGGAGGTGGATTAGTCCTCATCACTCGTGGATCGGTTTGAGCGAAGATA TTGATTGGTCATGGTTAGTTTTGGGTGGAAAACCCAGCGAAAAGACAAGA GCACTGCTATACGCTCCGCGTACGACCGGACCGCCGTGTCGGAACCGGGA TGTCAGTCGAAGAGGGCGGGGCACGGGGGTGGCACGTTTAGAGGTGCTGG TGCGGTTACACCTGTCCGAAACTGCTTCACTTTGTAGTGCCCCGTTTCAT AAAATCTTCATACCATGCCTTGCTATTTTTTTTCCTTCCGACGTTTTTCC GAACGATCTTTTTGGCCTTCGCCACCTGGGGCAGGCCGGGGACACGATGG CGATGTGGCTGCCGGAGTGCTCGGAGAAGCACGTGGCGCAGCTGGCGGCG GCGAGGATAGGGATGGTGGTCGCCGAGGTGGACCCCAAGCTCGCGTCGGC GGCAGCTGTCGAGAAAATCCTAGAGGAGTCCGGCGCGGCGGTAAGAGGGG GAACGGGGGCGGTATTTTGGTTCCTGGCGCCACGTGTTGTGTGCGATGTA ATCTTGTTCAGTCTCTGTTTGGTTGGCTGTTTAGATTCGTTCATCGATTG TTGGACCAAGTACGGATATGAAAGGGTACCAAGGGGAGATCGGTTTATGG TTTTGATGAAGATACGGTAGCGACAAGAAGGATGAACCCGTTTTTCAGGT GCTGTGTGTTTTTTGACCCCAATGACCGTTGCTCGAGCTTGGTTGCGTGG ATACATCCGGTGGTTTGCCGGCGTGTACGATCTCCCTCGCGAAGGTGGAA CCAGGCCCCTATTGTTTGGCGTCCGTTCGGGTACGGGAAGACTCGCCTTG GCTAATTGTATCTCTTGTGATGGGACTTGCTTCTGAAAGCCCTAATAAAA TTTCACCATGCGAGATGGACGCCAGGCGTGTTTGTTTGCGTGGTGGCCGT GTTTTGAATCGTAGGCGCACGTGTCAATGTGCAGACAGGGTTCCTGTCTG TGGCGGCCTTAGTGCTGTTTGTAGCAGTATCTTGGGGTGCATCATCACCA TACAGGCGCAGGCCCCTTTGTCTACGCTGTTCCCCGCGATATGATTTGCG GCGAAAACAAACCCTTTATTGGGGTAGCCTTATGGTGGCCCTGCGCTTGT TTCGCCCCAATGAAAAGATCGCAATGTATTTGGCATGGCGATTGACTCAT CGGGCGATTGACTCATTGGGCCTCTCCTTTGTTCTCGTTTGATTGTGTGT CATTTTGTGCATTGACCGGTTGTCTTGCAGGTGGTGCTCGTAGAGGAATC AGTCGTACCCAGCCTCACTGAGGCCGTCCCGGAGCTCCGCCACTACAGCA CCGACTCGGGCCTCCCCTTCCGGTCGGCCAAGCTGCCGTCCCTCCGGCTG TGCATCCACACCGGCCTGGAGCGAGAAGCGGCCGTGATGCACTTCCGCAG CGCACTTCTCTACACGCCGCCGGTCTCCCCGCTCGCCAAGGTCAACGGAC AGGTGCGTTACGATTTGATTGGCACCGTGATCGGTGTTGTGTCTGGACGC TAACCGAGTGGTGTGTTTGGACGCCACGGTATGGCACATATACGAATGCC GTACGTGGGTGCCTTGCTTTTCCTGGGCTCTAATGGATGGAGTCTCGTGC CTAAACATTTGGTGTTCGGTGTCGGTGCTGCCAGTGGTCTTGGTTAATAT TGTGTCTGGGTGCGCCATGCTCGTACAAAAGGACTGTTGTTCTGTGCTGT TCTGCCCGAACCCAACTCGGCCAAGTTGAAGAGCAGGAAATGTTTGTTTT TGCACCTCAGTGTTTGTTGAGGTTGTCTTCTATTTTGTTGTGATGGCGGT ACGTTTGCATCCCTTTTTTTGTTCGTCTCGTGTCTGATCGTGTGTGTGCT CGCGGGGAAGGCGTCGATGGGATTGATGCTGATCTTTGTGAACGCTGCAT TGTCGCTTTTTCTAAGTTCCCGGGCATTGTTTATTTCCGGAGGAGGGGGC GGGAGACAGAGACAGGAAACTCGATGTCATAACTGTCGTCCCCGACAACT ACCCACAAACGGACTCAAGAACATAACAGACACAAACCAGGAAGCTGTGG AAAGTTGAACGACAGGAACAAACGCCGTCCTCTTGCGCCTTATGCTACAC CGCTTGTTTTATGAGCATGAAGTTGCGAGAAAGTCGAATTTTTTTGACAA CTTTTGGTCGGAACGGGCGAAAAACGAAACACTTAACCCCCCCTCCCCCC CTTTCCTGTGCCAAAAATGAGCAGATCAAGGAGAGCGCTCCGCTGCACAC GATCTTCTCCGAGGGCACTGGGGGCACCCCCGAAAAGGGCAAGACCCTCT CTCACGCGGAGGTGGTACGCCTTGCCTCCTGGCCGACGATCGCTGCGATT CTCAAGAAGGAGTATGTGGAAGTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6422:478..4304+

>mRNA_Ecto-sp13_S_contig6422.17183.1 ID=mRNA_Ecto-sp13_S_contig6422.17183.1|Name=mRNA_Ecto-sp13_S_contig6422.17183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=858bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6422:478..4304+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGTCCTTGGCCAGGGCGACCGGAAGAGCGGCGGAGCACGCTGGCTG
CTTGAGGCCACGAAATGTCGCGTCGCGCAGCAGGCGGGGCGCTGCGGTTG
CGCTAAAGGCTGCGACGGAAGCAACAGCAGCGGGGGACATGCCGCTGACA
ACTCAGGCAGGTCGTTTTTTGGGAGGGCTGGCGTCGAAGGTGGATAAGGT
GCTCGCGGAGATTCCGATGAAGGAGGCCGTGCGCTACAAGAAGGGAAACC
TGAAGTGGACTAGATCCGACGTGAAGAGCCACTCTGAGGCACTCGCGTGC
GGCCTTCTTGAGCTGGGGTGCAAGGCCGGGGACACGATGGCGATGTGGCT
GCCGGAGTGCTCGGAGAAGCACGTGGCGCAGCTGGCGGCGGCGAGGATAG
GGATGGTGGTCGCCGAGGTGGACCCCAAGCTCGCGTCGGCGGCAGCTGTC
GAGAAAATCCTAGAGGAGTCCGGCGCGGCGGTGGTGCTCGTAGAGGAATC
AGTCGTACCCAGCCTCACTGAGGCCGTCCCGGAGCTCCGCCACTACAGCA
CCGACTCGGGCCTCCCCTTCCGGTCGGCCAAGCTGCCGTCCCTCCGGCTG
TGCATCCACACCGGCCTGGAGCGAGAAGCGGCCGTGATGCACTTCCGCAG
CGCACTTCTCTACACGCCGCCGGTCTCCCCGCTCGCCAAGGTCAACGGAC
AGCAGATCAAGGAGAGCGCTCCGCTGCACACGATCTTCTCCGAGGGCACT
GGGGGCACCCCCGAAAAGGGCAAGACCCTCTCTCACGCGGAGGTGGTACG
CCTTGCCTCCTGGCCGACGATCGCTGCGATTCTCAAGAAGGAGTATGTGG
AAGTCTGA
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