mRNA_Ecto-sp13_S_contig6413.17178.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6413.17178.1
Unique NamemRNA_Ecto-sp13_S_contig6413.17178.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6413.17178.1 vs. uniprot
Match: A0A6H5KKR9_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKR9_9PHAE)

HSP 1 Score: 514 bits (1323), Expect = 7.370e-177
Identity = 307/377 (81.43%), Postives = 317/377 (84.08%), Query Frame = 1 
Query:  133 MPGVRPGRGADLAVGARHCSGGXXXXXXXXXXGTSRRWLWTAAAMTAVTXXXXXXXXXXXXCTPD-STMAAKSAPGVAGXXXXXXXXXXXXXXXXXXXXXXD--KNTCSGVRGSSEAGQRQREGKARPADACRSPSASASTXXXXXXXXXXXXQATAAGWREDRSRSSAPPSWLDAGVFLRGVSALHLRGGVRAMSAAXXXXXXXXXXAGEGXKKKADGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGAHVSEYLRRNLYKHVMDHLPPGDDVYRLESVQEALRSAFKCADDYVITQTPYGTEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPKEMER 1254
            MPGVRPGRGADLAVGARHCSGGXXXXXXXXXXGTSRRWLWTAAAMTA  XXXXXXXXXXXX      +MAA SAPGVAG                XXXXXX   K++CSGVRGSSEAGQ+QRE +A PADA RSPSASAST            QATAAGWRED SRSSAPPSWLDAGVFLRGVSAL+LRGGVRAMS A          AGE  KKK DGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGA+VSEYLRRNLYKHVMDHLPPGDDVY LE+VQEALRSAFKCADDYVITQTPYG EGSCAVSVTIHCD+EGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAP+EMER
Sbjct:    1 MPGVRPGRGADLAVGARHCSGGXXXXXXXXXXGTSRRWLWTAAAMTAXXXXXXXXXXXXXXXXXXXDSMAATSAPGVAGGGRGGGRCELKNSRCSXXXXXXXXXKSSCSGVRGSSEAGQKQREDEAPPADAWRSPSASASTPATAPRAGAASPQATAAGWREDLSRSSAPPSWLDAGVFLRGVSALNLRGGVRAMSPAAAPSGRGSEEAGERGKKKVDGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDKEGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMER 377
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6413.17178.1 vs. uniprot
Match: D8LTV6_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV6_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 3.350e-110
Identity = 166/183 (90.71%), Postives = 169/183 (92.35%), Query Frame = 1 
Query:  706 MSAAXXXXXXXXXXAGEGXKKKADGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGAHVSEYLRRNLYKHVMDHLPPGDDVYRLESVQEALRSAFKCADDYVITQTPYGTEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPKEMER 1254
            MSAA          AGEG KKK DGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGA+VSEYLRRNLYKHVMDHLPPGDDVY LE+VQEALRSAFKCADDYVITQTPYG EGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAP+EMER
Sbjct:    1 MSAAAAPSGGGGEEAGEGGKKKVDGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHVMDHLPPGDDVYGLETVQEALRSAFKCADDYVITQTPYGNEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPREMER 183
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6413.17178.1 vs. uniprot
Match: A0A835Z7U5_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U5_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.220e-41
Identity = 94/205 (45.85%), Postives = 125/205 (60.98%), Query Frame = 1 
Query:  649 AGVFLRGVSALHLRGGVRAMSAAXXXXXXXXXXAGEGXKKKADGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGAHVSEYLRRNLYKHVMDHLPPGDDVYRLESVQEALRSAFKCADDYVITQTPYGTEGSCAVSVTIH---CDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPKEMER 1254
            AGV+  G S      GVR   AA                +  D + + + VP A  PLFTSV ++KGHR  MED++FLS+DG F+AVYDGHGGA VS+YLR+NLY  V  +LP  +     E + +AL++AFK  DD V+    +  +GS AV+V IH       G  SII+ N+GDSRAVL R GKA+++T+DHKPNA  E++R
Sbjct:   14 AGVYCAGGSPALADSGVRKPPAAVRA-------------ESTDTKEQARDVP-APAPLFTSVQASKGHRSYMEDDYFLSADGRFAAVYDGHGGASVSKYLRQNLYTQVKANLPLEEQECGEEHIIQALKAAFKTVDDEVLKVRHWSYQGSTAVAVVIHPTVAGGNGNCSIITANVGDSRAVLCRRGKAVEITKDHKPNATAELDR 204
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6413.17178.1 vs. uniprot
Match: A0A4D9DDA2_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDA2_9STRA)

HSP 1 Score: 143 bits (361), Expect = 8.590e-34
Identity = 83/165 (50.30%), Postives = 106/165 (64.24%), Query Frame = 1 
Query:  808 AGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGAHVSEYLRRNLYKHVMDHLPPGDDVYRL--ESVQEALRSAFKCADDYVITQTPYGTEGSCAVSVTIHCD----REG----------KVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPKEMER 1254
            AG P  TSV + KG R  MED+FF+S DGSF+ VYDGHGGA VS+YLR+NL    +  LP  D + RL  E V EAL +AF+  D+ V+    +   GS AV V IH +    +EG          K ++I+ N+GDSRAVLSR G+A+DLT+DHKPN P E+ER
Sbjct:  309 AGGPYTTSVVAFKGQRSYMEDDFFISKDGSFAGVYDGHGGAAVSKYLRQNLNAQFLAALPDAD-MRRLGQEKVTEALATAFRVVDEAVVKVRHWAYMGSTAVVVVIHAEEAKAKEGVEEGGRAGALKRTLIAANVGDSRAVLSRRGQAVDLTDDHKPNKPSELER 472
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6413.17178.1 vs. uniprot
Match: A0A3L6V8K9_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V8K9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.690e-32
Identity = 67/154 (43.51%), Postives = 97/154 (62.99%), Query Frame = 1 
Query:  793 KRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGAHVSEYLRRNLYKHVMDHLPPGDDVYRLESVQEALRSAFKCADDYVITQTPYGTEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPKEMER 1254
            KR   +  PL  S ++ +G RP MED  F++ +  F+AV+DGHGGA+VS YL+  LY H++ +L P  D + L+ ++ +LR AF+  D  ++ +  + T+GS A +V +  D      I S N+GDSRAVL R G+AL+LT DHKPN P E  R
Sbjct:   77 KRTSKSDSPLLVSSSAVRGDRPTMEDALFIAPNQRFTAVFDGHGGANVSSYLKETLYDHIVANLGPHKDTWSLDEIESSLRDAFRAVDAAILKRREWITQGSTATAVLLVDDL-----IWSMNVGDSRAVLCRHGRALNLTRDHKPNDPMERLR 225
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6413.17178.1 vs. uniprot
Match: A0A418FA55_9STRA (PPM-type phosphatase domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FA55_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.690e-32
Identity = 67/154 (43.51%), Postives = 97/154 (62.99%), Query Frame = 1 
Query:  793 KRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGAHVSEYLRRNLYKHVMDHLPPGDDVYRLESVQEALRSAFKCADDYVITQTPYGTEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPKEMER 1254
            KR   +  PL  S ++ +G RP MED  F++ +  F+AV+DGHGGA+VS YL+  LY H++ +L P  D + L+ ++ +LR AF+  D  ++ +  + T+GS A +V +  D      I S N+GDSRAVL R G+AL+LT DHKPN P E  R
Sbjct:   77 KRTSKSDSPLLVSSSAVRGDRPTMEDALFIAPNQRFTAVFDGHGGANVSSYLKETLYDHIVANLGPHKDTWSLDEIESSLRDAFRAVDAAILKRREWITQGSTATAVLLVDDL-----IWSMNVGDSRAVLCRHGRALNLTRDHKPNDPMERLR 225
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6413.17178.1 vs. uniprot
Match: A0A024TM43_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TM43_9STRA)

HSP 1 Score: 136 bits (342), Expect = 2.910e-32
Identity = 67/154 (43.51%), Postives = 96/154 (62.34%), Query Frame = 1 
Query:  793 KRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGAHVSEYLRRNLYKHVMDHLPPGDDVYRLESVQEALRSAFKCADDYVITQTPYGTEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPKEMER 1254
            KR   A  PL  S ++ +G RP MED  F++ +  F+AV+DGHGGA VS YL+ NLY H++ +L P  D + L+ ++ +LR AF+  D  ++ +  +  +GS A +V +  D      I S N+GDSRAVL R G+A++LT DHKPN P E  R
Sbjct:   85 KRTSKADSPLLVSASAVRGDRPTMEDALFIAPNRRFTAVFDGHGGADVSSYLKANLYDHILANLGPAKDTWNLDEIETSLRDAFRTVDAVILERREWIAQGSTATAVLLMDDL-----IWSMNVGDSRAVLCRNGRAVNLTRDHKPNDPMERSR 233
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6413.17178.1 vs. uniprot
Match: A0A485L3M8_9STRA (Aste57867_15235 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3M8_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.050e-32
Identity = 70/154 (45.45%), Postives = 96/154 (62.34%), Query Frame = 1 
Query:  793 KRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGAHVSEYLRRNLYKHVMDHLPPGDDVYRLESVQEALRSAFKCADDYVITQTPYGTEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPKEMER 1254
            KR   A + L  S ++ +G R  MED  F+S    F+AV+DGHGGAHVS YL+ +LY  V+ HL P  D + L+ +   LR+AFK AD  ++ +  +  +GS A +V +  D      I S N+GDSRAVL R G+AL+LT DHKPN P+E +R
Sbjct:   81 KRTTKADQQLLVSTSAVRGDRATMEDTLFVSPSHRFAAVFDGHGGAHVSRYLQAHLYDLVVSHLGPDQDTWSLDEIDARLRAAFKAADTAILARKEWREQGSTATAVFLIDDL-----IWSMNVGDSRAVLCRDGRALNLTRDHKPNDPEERQR 229
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6413.17178.1 vs. uniprot
Match: A0A397AF64_9STRA (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AF64_9STRA)

HSP 1 Score: 132 bits (333), Expect = 5.080e-32
Identity = 67/154 (43.51%), Postives = 97/154 (62.99%), Query Frame = 1 
Query:  793 KRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGAHVSEYLRRNLYKHVMDHLPPGDDVYRLESVQEALRSAFKCADDYVITQTPYGTEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPKEMER 1254
            KR   +  PL  S ++ +G RP MED  F++ +  F+AV+DGHGGA+VS YL+  LY H++ +L P  D + L+ ++ +LR AF+  D  ++ +  + T+GS A +V +  D      I S N+GDSRAVL R G+AL+LT DHKPN P E  R
Sbjct:  104 KRTSKSDSPLLVSSSAVRGDRPTMEDALFIAPNQRFTAVFDGHGGANVSSYLKETLYDHIVANLGPHKDTWSLDEIESSLRDAFRAVDAAILKRREWITQGSTATAVLLVDDL-----IWSMNVGDSRAVLCRHGRALNLTRDHKPNDPMERLR 252
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6413.17178.1 vs. uniprot
Match: W4FHR9_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FHR9_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.470e-31
Identity = 67/154 (43.51%), Postives = 97/154 (62.99%), Query Frame = 1 
Query:  793 KRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSFSAVYDGHGGAHVSEYLRRNLYKHVMDHLPPGDDVYRLESVQEALRSAFKCADDYVITQTPYGTEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGKALDLTEDHKPNAPKEMER 1254
            KR   +  PL  S ++ +G RP MED  F++ +  F+AV+DGHGGA+VS YL+  LY H++ +L P  D + L+ ++ +LR AF+  D  ++ +  + T+GS A +V +  D      I S N+GDSRAVL R G+AL+LT DHKPN P E  R
Sbjct:   84 KRTSKSDSPLLVSSSAVRGDRPTMEDALFIAPNQRFTAVFDGHGGANVSSYLKETLYDHIVANLGPHKDTWSLDEIESSLRDAFRAVDAAILKRREWITQGSTATAVLLVDDL-----IWSMNVGDSRAVLCRHGRALNLTRDHKPNDPMERLR 232
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6413.17178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKR9_9PHAE7.370e-17781.43PPM-type phosphatase domain-containing protein n=1... [more]
D8LTV6_ECTSI3.350e-11090.71PPM-type phosphatase domain-containing protein n=1... [more]
A0A835Z7U5_9STRA3.220e-4145.85Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A4D9DDA2_9STRA8.590e-3450.30PPM-type phosphatase domain-containing protein n=2... [more]
A0A3L6V8K9_9STRA2.690e-3243.51PPM-type phosphatase domain-containing protein n=2... [more]
A0A418FA55_9STRA2.690e-3243.51PPM-type phosphatase domain-containing protein n=5... [more]
A0A024TM43_9STRA2.910e-3243.51PPM-type phosphatase domain-containing protein n=2... [more]
A0A485L3M8_9STRA4.050e-3245.45Aste57867_15235 protein n=1 Tax=Aphanomyces stella... [more]
A0A397AF64_9STRA5.080e-3243.51PPM-type phosphatase domain-containing protein (Fr... [more]
W4FHR9_9STRA2.470e-3143.51PPM-type phosphatase domain-containing protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6413contigEcto-sp13_S_contig6413:1..4762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score335.9
Seed ortholog evalue2.7e-89
Seed eggNOG ortholog2880.D8LTV6
Model size1254
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-28_002580.1
Cds size1254
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6413.17178.1prot_Ecto-sp13_S_contig6413.17178.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6413 1..4762 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463887.1822743-CDS-Ecto-sp13_S_contig6413:0..791681463887.1822743-CDS-Ecto-sp13_S_contig6413:0..79Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6413 1..79 -
1681463887.193315-CDS-Ecto-sp13_S_contig6413:746..9521681463887.193315-CDS-Ecto-sp13_S_contig6413:746..952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6413 747..952 -
1681463887.202807-CDS-Ecto-sp13_S_contig6413:1369..14921681463887.202807-CDS-Ecto-sp13_S_contig6413:1369..1492Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6413 1370..1492 -
1681463887.2117786-CDS-Ecto-sp13_S_contig6413:2390..29011681463887.2117786-CDS-Ecto-sp13_S_contig6413:2390..2901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6413 2391..2901 -
1681463887.2205722-CDS-Ecto-sp13_S_contig6413:3394..35491681463887.2205722-CDS-Ecto-sp13_S_contig6413:3394..3549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6413 3395..3549 -
1681463887.2295854-CDS-Ecto-sp13_S_contig6413:4582..47621681463887.2295854-CDS-Ecto-sp13_S_contig6413:4582..4762Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6413 4583..4762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6413.17178.1

>prot_Ecto-sp13_S_contig6413.17178.1 ID=prot_Ecto-sp13_S_contig6413.17178.1|Name=mRNA_Ecto-sp13_S_contig6413.17178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=418bp
QSSSSGASSSEAFARPSAPASSSQAKSITTRSGGTQQQCRAGGSMPGVRP
GRGADLAVGARHCSGGGGGGSGGGAAGTSRRWLWTAAAMTAVTAVTANTA
TSASTCTPDSTMAAKSAPGVAGGGRGGGGCERKNSRCSSSSSSDDKNTCS
GVRGSSEAGQRQREGKARPADACRSPSASASTPATAPRAGAASPQATAAG
WREDRSRSSAPPSWLDAGVFLRGVSALHLRGGVRAMSAAAAPSGGGGEEA
GEGGKKKADGEGRGKRVPLAGRPLFTSVASTKGHRPRMEDEFFLSSDGSF
SAVYDGHGGAHVSEYLRRNLYKHVMDHLPPGDDVYRLESVQEALRSAFKC
ADDYVITQTPYGTEGSCAVSVTIHCDREGKVSIISCNLGDSRAVLSRGGK
ALDLTEDHKPNAPKEMER
back to top

mRNA from alignment at Ecto-sp13_S_contig6413:1..4762-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6413.17178.1 ID=mRNA_Ecto-sp13_S_contig6413.17178.1|Name=mRNA_Ecto-sp13_S_contig6413.17178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6413:1..4762- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAGCAGCAGCAGTGGAGCCTCCTCGAGCGAGGCCTTTGCACGTCCCTC
CGCCCCGGCATCATCCTCGCAGGCTAAGAGCATAACCACCCGGAGCGGCG
GAACCCAGCAGCAGTGCCGGGCAGGGGGATCGATGCCCGGTGTACGACCG
GGACGCGGGGCGGATCTAGCTGTCGGCGCGGTAAGTGTAGTTACAGCTGC
TGTATGTATTAGCCGCGCGCGCTCTCTTGTTGCGCGTTTTTGCTGAGGAT
AATGGAGGATACGATCGTCACTCGGTCCTTGGAATAACCTACCAGTAGCC
CTCTGCCAGGCGGAGCAGGTTGCTTCTAGATTGAGGCAAAAGCTGGGGGC
TGGCTTGCTGCCGTTCCCTACGTCTATACCCTCGGTGGTTTGGATATAAC
TGTGTTAGTTTCTGCGCCGTAGTCGCGGGCGCGAATTCTGGGCCGCCGCC
CATGCACGAAAGACTCAGCACATGAGAAGTGGCGTATGACTGAACGACGA
CCAATGTACATAGGTAGTTGAAGAAGCTCTCTGTGTCTCTTTGTGCCTAC
TGTATCTTCGTTTACTTGGGGGCTGGTGCGCACCCGTGTTGCAGGCGTAG
AACGACGGTGCACTCCCGCCAAAAATTGGTTCGGGGGAGGTGGAACAAGG
ATCCCAATTTTACAGTCAAGTGATCCGAAACGAAACGTAGTTAGCCCGGC
GGCGCGCGTTTTTGACGCGGGTTTGTCTCCTCTGGCCTCTCCCCGCCCGA
ATGGCACATATTTTAGCGAATGGCACGTGATGTGCTGCAGACAGACGAAC
AGATACAAGAAATTCGCGCTCGCCGCGAACGCTCTCCGGCTACATTTTCC
CCACGCTTCTTGTGACGATTCTCTTTTCATTTTACAAGAGTTTCGACGCA
TGAGGAATTGGTTCGGCAACTGGTCCATGTACCGAAGAGACTTTACAGCT
GGTCGGTGCCGAGCAGTATTCCCTCCCCAGCTTCGCAGAAGACCTGCACA
TAGGTGGCACCACAGCGGGAGCGCTGACCAGCCCGCGGTTCAACAACGGC
GGTGACGGCATCTTTGTCGAGTCGCGTTGATCACCGATTGATCTTGTTGA
TGTTGATTGGTCTGCTCGCTCTTGCTTTATCTCCAACTCTTACCGTCATC
TCTGTCTCTACTTTTCAATCTGTCTCTTCGACCCACAACCGGCCTTACCC
TCGCCTGTAACAGCGACACTGCTCCGGCGGCGGCGGGGGAGGAAGCGGAG
GGGGAGCGGCGGGAACAAGCCGGCGATGGCTGTGGACGGCGGCGGCCATG
ACGGCGGTGACGGCCGTGACGGCCAATACCGCCACCTCCGCGTCAACCTG
CACACCCGACTCCACCATGTGAGAATTTATTTCTCTCTGAGGAGTCGAAT
GTAAACGCTCGTCCCTCCGATCATGTGACCTGATGCACTACTGCTGTTTC
CCTGAAAGTACAACGACGGGGGCGAGTGCGGAGTGGTGTCTTGTGTCCGT
TTACATTCGACTCGACAGCAGTTGAGGGGGTTCAAGTGCCTGATCTAAAG
TGACAAGGGATGGATAATTTTATGCATGTACATGCGCGAGTTGGAGACAG
TAAATCCCGTTGTCGGAAGCTAGCGGCGCGGTTTAGCGCTACGTTTACAT
GCGTGCGGCTTGTATGGAGGACACATTCTACTCTTCTATTGCGCGAACGC
CTCCTTGGCATCGTTGTGAAGGCTGCCTCGAATTCAACTCTTTGGTGCAT
GTTTCGTCGTGTCAGTCACGGCGTGGAATTCTGCCCTTTTTCTCACCATA
AGCGCTCCTTTTTCGACATTTCGGCGACTTGGCTGCCCTTTGCGCGCTGA
CACCCCCCCAGGGCCGCAAAATCGGCGCCGGGTGTAGCAGGAGGGGGGAG
GGGAGGCGGCGGGTGCGAGCGGAAAAACAGCAGGTGCAGCAGCAGCAGCA
GCAGTGACGATAAGAACACCTGCAGCGGTGTCCGTGGTTCTTCTGAAGCC
GGACAGAGACAGAGGGAGGGCAAGGCACGTCCGGCTGATGCTTGTCGATC
ACCGTCAGCCTCTGCATCCACGCCTGCAACAGCACCTCGAGCAGGCGCGG
CATCACCACAGGCCACGGCAGCAGGCTGGAGAGAAGACCGATCAAGATCA
TCGGCGCCCCCGTCTTGGTTAGACGCCGGGGTTTTCCTGCGCGGGGTTTC
GGCGCTACACTTGCGGGGAGGGGTGAGGGCCATGAGCGCGGCGGCAGCGC
CCAGTGGCGGCGGGGGGGAGGAAGCTGGGGAGGGGGGCAAGAAGAAGGCG
GACGGGGAAGGGCGCGGGAAGCGCGTCCCGTTGGCAGGGCGGCCGCTGTT
CACGAGCGTGGCGTCGACCAAGGTAAATCAATTTGAGACAGCCTGCTGCA
GCTGCCCTGTCTCTCGTGCTGGTGCTGTTGTTTTTCTGCTGCTGCTGCAG
CCCGGCGCTGTTTGTTGTCGTTGTCATCGTCGTCGTTATCGATCGTTGTC
CCCATTAGTCTCGGGCATGCTTCTACTATTTGTAGAAAACACACCATCAC
TGAAAGACTGCCCGTTCGAGAGACAACCACACCAGTCTCATGTCCCGTGC
CGGACCTCCAACACTACTTGTTATCTATGAACATTGTTCTCGTTCTTTGC
GAACCAAACGCTGGACCAATAGACCGCCTTTGGCCAGTTTTCTGGTCCTC
GAGAGCTGCTAGACCCCCCGCGACCACGCGCCAAGATTGCCGCAGCGCCC
TCCGTTTTTCGCTGATTTACTACTTCCCTGGTGATGAAAGATGAAAATGA
AAACAGGCAGCAGCACCAGGCCACGGTTGGGTGCCAGCTGCCAGTTAGTT
GTTGGTTTCCCGAGCTGGACAGCTCACACAGCTGGCGTGTTTTACTCGAA
GACCTCACAGAACCTCATAGAACCAAAAAGGAAAAGTTACAAATTTGTGC
ATACAGAATTTCAAAAAACACGCCAGTTTCTATTTTCCTTACTGCTGTAA
TATGGCTGTGAGCGTAAAGTGCTCTGCCTCAAGTGATTCATCTACTGGTA
CATATTTTGAGCCAGTCATCGAGGCGCCATGTTCTTTGCATCTGTTCCTG
GATGAGGGTGTTTTTTGTGCACATATCCGTCTCCCCCAGAACCACATATT
TCCAAGAATACATCAGAGCAAAGATAATCAAGTCACACACATATTTGTAC
GCCGAAGCGTCAATTTGTACGCTTCTGCTGTATTCTCATTTTTGTTGTAC
CTTGATGGTGGTCCACTCAGGGGCACCGGCCGCGCATGGAGGACGAGTTT
TTCTTGTCCTCCGACGGGAGCTTTTCGGCCGTTTACGACGGGCATGGTGG
CGCTCACGTGTCAGAGTACTTGAGGCGAAACCTTTACAAGCACGTGAGTT
TTGGGTACCTGTTTGGTGTCGCTTGTTGCTGTGATCGTTTTGCTGCTGCT
GCTGCCGCTGCTGATACTGTTTTGTTATGCGTTGAGGAACCGTTCTGGGT
GCCGTTCTTGGCCGTCACTCTTCCATTTCCTCTACTATCCCAACCTGCAC
AACACTGTCTCGGTGATCGTTTGCATTGATGAGTCTGAGAAAGATTATAC
ACAGGAACTCTTGTGGTCCAGAGCAACTGTACCGATGAGTGGTCCTTCCG
CGCCTTGCTCTACAATTCGCACGCTGACCGTTGAATGGACTTAACAGACA
CACCCACAAAACGCCTGCAGAATAATTCTACTGATGTGTGGTCCCCTTGC
TCTACAATTCGCTCGCTGAAGTAACTAAAACATACCACTCTCCTGTTGTT
GTGTGTGTAGGTGATGGACCACCTGCCCCCCGGGGACGACGTGTACCGCC
TCGAGAGTGTCCAGGAGGCGTTGCGGTCGGCCTTCAAGTGCGCCGACGAC
TACGTCATCACGCAGACCCCCTACGGAACCGAGGGGAGCTGCGCCGTATC
GGTTACGATCCACTGCGACAGGGAGGGCAAGGTCTCCATCATCTCCTGCA
ACCTGGGAGACTCACGGTAAGGGGGGGTAACGAATTGGTGGTGTAAGTTT
GTGTGTGTGTGGGGGGTGCTTCTCGGTTATGATCCACTATGACAGGGAGG
TGAAGGTCTCTACTGTCCCCTGCAGCCTGGGAGACTCGAGATAGGTGCGG
GGGGGGTGACGCGTTGGGGTAGAGATGGGGGGGGGGGTTGCTTCTAAGGG
GCAAGGTTCGTAAGTGGTTGGAACGGCGATTGTATTGGTGTGCAAGTGTG
GTGGTGGCTTCTCTTTTTTCTTCTGTGGGATGGTTTAGGTAGTGGAAGGG
GTGTGTCCTGTCTTTCATGGTGGTGGCAAGGACAGGGTGTCTTCCAATCG
TCTGGAGCTGTCTTTCGTGCAGGTGGTGCTTGTCTTCGCGAATTTTTTTC
TGCGATCAAATCAGTCACACTCACTCCGTGTGTCTCAAGGTAGACAGGAA
TGACCCAAGAATCCCGGTGCAGCAGCGGTTTGTTCTTTACGTGTTTGGCT
GCTGCGGTTGGTCTTGATGTTGCTTCTGCTCTTGTCGTCGATGCCAACGG
GGTCGTTCTCGAAGAGTCTTCCACGGAAGACGATAACGATACAGAGGTTG
ATCGTTGCATGTCAATGACCGTTTCTCCAGACGACGTTTGCTCCCGCTGT
TTGTGTTCCCGTGGCATCGTAACGTAACGCCAGGGCGGTGCTGAGCAGGG
GAGGGAAAGCTCTGGATCTCACGGAGGACCACAAGCCCAACGCCCCTAAA
GAGATGGAGCGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6413:1..4762-

>mRNA_Ecto-sp13_S_contig6413.17178.1 ID=mRNA_Ecto-sp13_S_contig6413.17178.1|Name=mRNA_Ecto-sp13_S_contig6413.17178.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1254bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6413:1..4762- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAGCAGCAGCAGTGGAGCCTCCTCGAGCGAGGCCTTTGCACGTCCCTC
CGCCCCGGCATCATCCTCGCAGGCTAAGAGCATAACCACCCGGAGCGGCG
GAACCCAGCAGCAGTGCCGGGCAGGGGGATCGATGCCCGGTGTACGACCG
GGACGCGGGGCGGATCTAGCTGTCGGCGCGCGACACTGCTCCGGCGGCGG
CGGGGGAGGAAGCGGAGGGGGAGCGGCGGGAACAAGCCGGCGATGGCTGT
GGACGGCGGCGGCCATGACGGCGGTGACGGCCGTGACGGCCAATACCGCC
ACCTCCGCGTCAACCTGCACACCCGACTCCACCATGGCCGCAAAATCGGC
GCCGGGTGTAGCAGGAGGGGGGAGGGGAGGCGGCGGGTGCGAGCGGAAAA
ACAGCAGGTGCAGCAGCAGCAGCAGCAGTGACGATAAGAACACCTGCAGC
GGTGTCCGTGGTTCTTCTGAAGCCGGACAGAGACAGAGGGAGGGCAAGGC
ACGTCCGGCTGATGCTTGTCGATCACCGTCAGCCTCTGCATCCACGCCTG
CAACAGCACCTCGAGCAGGCGCGGCATCACCACAGGCCACGGCAGCAGGC
TGGAGAGAAGACCGATCAAGATCATCGGCGCCCCCGTCTTGGTTAGACGC
CGGGGTTTTCCTGCGCGGGGTTTCGGCGCTACACTTGCGGGGAGGGGTGA
GGGCCATGAGCGCGGCGGCAGCGCCCAGTGGCGGCGGGGGGGAGGAAGCT
GGGGAGGGGGGCAAGAAGAAGGCGGACGGGGAAGGGCGCGGGAAGCGCGT
CCCGTTGGCAGGGCGGCCGCTGTTCACGAGCGTGGCGTCGACCAAGGGGC
ACCGGCCGCGCATGGAGGACGAGTTTTTCTTGTCCTCCGACGGGAGCTTT
TCGGCCGTTTACGACGGGCATGGTGGCGCTCACGTGTCAGAGTACTTGAG
GCGAAACCTTTACAAGCACGTGATGGACCACCTGCCCCCCGGGGACGACG
TGTACCGCCTCGAGAGTGTCCAGGAGGCGTTGCGGTCGGCCTTCAAGTGC
GCCGACGACTACGTCATCACGCAGACCCCCTACGGAACCGAGGGGAGCTG
CGCCGTATCGGTTACGATCCACTGCGACAGGGAGGGCAAGGTCTCCATCA
TCTCCTGCAACCTGGGAGACTCACGGGCGGTGCTGAGCAGGGGAGGGAAA
GCTCTGGATCTCACGGAGGACCACAAGCCCAACGCCCCTAAAGAGATGGA
GCGA
back to top