mRNA_Ecto-sp13_S_contig6412.17176.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6412.17176.1
Unique NamemRNA_Ecto-sp13_S_contig6412.17176.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6412.17176.1 vs. uniprot
Match: D8LHE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE5_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 4.610e-58
Identity = 104/108 (96.30%), Postives = 106/108 (98.15%), Query Frame = 3 
Query:  609 DESRPLVVRLWYCDIGIKGNVPNWAVREKLLDKFLVGGKPVPERVLEIGRMYKRMADAGYLAKEPGLGSADIAKAHERFLKYLQEAKRAPAAAQAGRGTRRSASVNRA 932
            DESRPLVVRLWYCDIGIKGNVPNWAVREKLLDKFLVGGKPVP+RVLEIGRMYKRMADAGYLAKEPGLGSADIAKAHERFLK+LQEAKR PAAAQAGRGTRRS SVNRA
Sbjct:  459 DESRPLVVRLWYCDIGIKGNVPNWAVREKLLDKFLVGGKPVPDRVLEIGRMYKRMADAGYLAKEPGLGSADIAKAHERFLKHLQEAKRTPAAAQAGRGTRRSVSVNRA 566
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6412.17176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHE5_ECTSI4.610e-5896.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6412contigEcto-sp13_S_contig6412:949..4350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1359
Hectar predicted targeting categoryother localisation
Exons4
Cds size429
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6412.17176.1prot_Ecto-sp13_S_contig6412.17176.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6412 1479..3926 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463887.051609-UTR-Ecto-sp13_S_contig6412:948..12241681463887.051609-UTR-Ecto-sp13_S_contig6412:948..1224Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6412 949..1224 +
1681463887.0643263-UTR-Ecto-sp13_S_contig6412:1248..14781681463887.0643263-UTR-Ecto-sp13_S_contig6412:1248..1478Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6412 1249..1478 +
1681463887.1212416-UTR-Ecto-sp13_S_contig6412:3926..43501681463887.1212416-UTR-Ecto-sp13_S_contig6412:3926..4350Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6412 3927..4350 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463887.0757108-CDS-Ecto-sp13_S_contig6412:1478..17211681463887.0757108-CDS-Ecto-sp13_S_contig6412:1478..1721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6412 1479..1721 +
1681463887.093095-CDS-Ecto-sp13_S_contig6412:2581..26731681463887.093095-CDS-Ecto-sp13_S_contig6412:2581..2673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6412 2582..2673 +
1681463887.1107056-CDS-Ecto-sp13_S_contig6412:3832..39261681463887.1107056-CDS-Ecto-sp13_S_contig6412:3832..3926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6412 3833..3926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6412.17176.1

>prot_Ecto-sp13_S_contig6412.17176.1 ID=prot_Ecto-sp13_S_contig6412.17176.1|Name=mRNA_Ecto-sp13_S_contig6412.17176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MHADRPSPLHSFAWNHPKSNPPAPRSNTRLFGAKDESRPLVVRLWYCDIG
IKGNVPNWAVREKLLDKFLVGGKPVPERVLEIGRMYKRMADAGYLAKEPG
LGSADIAKAHERFLKYLQEAKRAPAAAQAGRGTRRSASVNRA*
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mRNA from alignment at Ecto-sp13_S_contig6412:949..4350+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6412.17176.1 ID=mRNA_Ecto-sp13_S_contig6412.17176.1|Name=mRNA_Ecto-sp13_S_contig6412.17176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6412:949..4350+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATAGCGGTCAAAAGACTGCCGCGAGTGCCACTTGACCCCCCCGGATGAG
TGCCTGGTTTGTGAATCTCTTCTCCGTCGGGGGGGTTAGTCCATCCTGGG
CGTTGAAAGGGAGAAAGAGGTGCCCTCGAGCCGGAATCGAGACAGACGGA
GAGATGAGAGATGGCCGAGTAGGGTGGCGGATAAAAAGCACAGCATGTTG
TCCGTCAGGTGGCCCTTCGGTGTATAATAGCAAGGTATTTGGTCGAAAGA
CCACGGTATGTGTATTCCTACGCTAGGCCATTACTCTTGTCGGGGGGGAG
AGGACAATAAGCGCGTAGCTGTACGAACCGTCACGCCGAACACAGCCGCA
CGCGTTCATGCCTGAGATGAAGCAACACATTACATGCATCTTGCCTGAGA
TGGAACCGGTCGCTCATTCCAAACCACGCACAATCACACTGACGCCATCA
ACGAAAACAAGTTAGGTTGAGTACGCCATCCCCCAAGCCTGTTTTGTTTT
CTACCCCCATCCCCCTGTTTTTTGCCACCAATGCATGCCGATCGCCCATC
CCCTCTCCACTCATTCGCATGGAATCACCCAAAGTCGAACCCCCCGGCAC
CCCGTTCGAACACTCGTCTGTTTGGCGCGAAGGACGAGAGCAGACCTCTG
GTGGTACGGCTATGGTACTGCGACATCGGGATTAAGGGTAACGTGCCGAA
CTGGGCTGTGCGAGAGAAACTTCTTGACAAATTCCTCGTGGGCGGCAAGC
CCGTCCCCGAGAGGGTTCTCGAAGTAAGTATTTAGAACCTGAATGATAGA
GTTTTGAGTTCTTCAATAGTTAAAACCTAGAACTAGTAACATTTTTGTTT
TCAGAAATCAAGAAATATTATGTTGCCCTGAAGAATCATTCATGGAGATA
GTATCCCTTTAAGTACTCGTTAGATCCTACTGCGTACGTCGATGGTGATG
GTATGCTTTCGCCTGCACTGGAAGAGGTCGTGATTCCTGTGGATTTGCCC
TCCACCGGCCACAATTGTAGGCTAGCTGAAAGGCGCCTGTGTTGCCGTGA
CTGGTAGCGTTGGCGGCTATCGTGGTGAACATGTTGTTGCGTCTACACTG
CAAGAGGTCGTGATTTCTGCATGTACAACTGCCCGGCATCCCTGCTTGTT
CGTGCTGATTCAGCAAGCTATAGATGCAGGCTACCTCAAACGCTCATGCA
AGCTATCATTGAAAACCCAGCGAAGAGACCTGTGGAAGCACCGCCTGAGA
TCTCGGATCTAGCTTGAAAATCGTTGGATGGAGTTGCCACGCGAAGGGGA
AACCGAAACAAACGTAGGAAATAAAGGCATCGCTCAGAGCCTGACACCAA
GGCGTAGCGGCAGTGGAGACACCACGCTCGGTGTAGCACTTCTGTGTTCT
AAGCGGTGGTCACAAGCTTCCTTGTCACCTATGTCTTAGCTGCCTTCTTC
CACCACCACAGGTTTTTGAGTCGCCATCTTGAAACCTCTAATCCTTGGAA
GGTAGGGCAACGGTAGTACTGGGTAGAGGACAGAGCGGTCTCCCTCCAAC
CCTGAGACGACATAATTAGATTCATCGAAGGAGGTCGCGTTCCACGCCCC
GCCCTGCATGGTTTCATCGCATGCCTCCCGCAGATAGGGCGCATGTACAA
ACGCATGGCAGACGCGGGGTATCTCGCCAAGGAGCCTGGGCTGGGTTCCG
CAGACATTGCGAAGGCGCACGAGAGGTACTTACTTGCTTGATTCTCAACC
TCGCTAAAAAGATTGTTTCAGCCGTTTTGGGGAGATAGTAGCTCGTTTCT
AAATAATAAGTTTCGAAAGTTTTGGCGATTTTGAGGGTGCTCGACTTGTT
TCTCACGGAAGGTGCAGTCTTCTACCGTATACGACGCAAGATATCACAAA
CCCCAGACCTATTTTCACTATCGATTTCTCATCAGCAGAAAGATTCACGG
CGCCCAGAACGGCGGTGTTGAAGCCGTATGGTCGAGAGCTTTCCAAAAGC
GTATCGTTTCGGTCATGCATCCTCTTCGTCGTGGAGTAATCGAGCTTCGA
AAATCGGTCCAGGGAAGAGTTGTCTTGCGTCGTATACGGTATTGTCGATG
CGATGGATGCGATCGAGGAAAGCAATTGCTATATAGGAGAGGGGGTTCGA
TCGGGCCCAGCTGCAGACATCGCTATTGCTAAAGAAGAGTGGCTCATTCG
TTCATGTTGCATGGGGCCTTCTTTCAGTCAGGCCACCACACAAAATAATC
TCGAGTGCTCCACCGCACCAAGTTCACTGTCAATCCGGGTCTTTACTCCT
CGCGGTTTGGTGTCCACGACCGACGAATTCCTTTTTTTTGCTGTGAGAAG
CTTGTATGTATCTGTAGACCTGACGTTTCATGGACAATCACAACAATCAC
TTTTTGGATCCAGGTTCGAGGAGAGATGTATTAGCTCTGCGTCCCTCTGC
CGACACGTCTGCTTTCCCGCCGACCCTCTGGTCACATATCACTCTCTGCT
CTCATTCGTTATCGTGAAATGTGATTTGTACCTCTTCACTATAGTCACCT
CGAAGCGGCGTGAAGTATCAATTAGTCCTGCCACAGGTGCAGGTTTTTGC
TGCTTTCCTTTGGTTGTGTTCTCCTTCTTAAGGTCGATCCTTGTCTTCGT
TGTTTGGGGATACTCAGCACTCGATGCTGATGTACGGAGATCTAGAGGGG
CTCCTGCATTATTGGTGGCATGTGTCGGTGGAGGGGCAAACCCCATTCTG
CTGTGCATCGGGTAGCATGCCCGGCGCACTCGTCAATAGTGATACCAAGG
TCTTGAGTCAACCTTCTCTTCCCTTACGCTTCTGACAATTAGCTGCCCCC
CTTCAAACATTTTTTTCTTTGGGCCTACCAACAGATTCCTCAAGTACCTC
CAAGAGGCCAAGCGAGCTCCTGCCGCCGCTCAGGCTGGTCGAGGCACCCG
CCGGTCAGCGTCGGTGAACAGGGCGTAGCGGGCGCACGCCGGTTTGTTGA
GGCCGGCGTAACAGAACAAAAACGACAGCGAGCGGCTGCAGTGGCGGCGG
CGGAAGGAGCGGAAGGGGAGCGAGCGTGCCTTCATTGTTGGACCATTGAC
CACGCGTCCTCGAGAGGACGGAACGTTGTTCGTACCACTGGGGGGCGTAC
CTTAGGTGACACAAGATACCACACCCCCCTGAAGCTGTTTTCAAAGCTCG
ATTTCTACACAAGAGAATGGCTGACACCACCGAAAATGGCGCGTTGAAGT
AGTCTCGTCAAGAGCTCTCCGGCATCATGTCGTTGCATTTATGCATCCTC
TTCATCATGCAGTAATCGAGTTTTGAAAATCGGTCCAGGGTGTGTGTTAT
CCTGTGTCGTGCTCAGCTTTTGCGTGCCTCAGCGGTTTGAGTATTGACCG
AC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6412:949..4350+

>mRNA_Ecto-sp13_S_contig6412.17176.1 ID=mRNA_Ecto-sp13_S_contig6412.17176.1|Name=mRNA_Ecto-sp13_S_contig6412.17176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6412:949..4350+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATGCCGATCGCCCATCCCCTCTCCACTCATTCGCATGGAATCACCC
AAAGTCGAACCCCCCGGCACCCCGTTCGAACACTCGTCTGTTTGGCGCGA
AGGACGAGAGCAGACCTCTGGTGGTACGGCTATGGTACTGCGACATCGGG
ATTAAGGGTAACGTGCCGAACTGGGCTGTGCGAGAGAAACTTCTTGACAA
ATTCCTCGTGGGCGGCAAGCCCGTCCCCGAGAGGGTTCTCGAAATAGGGC
GCATGTACAAACGCATGGCAGACGCGGGGTATCTCGCCAAGGAGCCTGGG
CTGGGTTCCGCAGACATTGCGAAGGCGCACGAGAGATTCCTCAAGTACCT
CCAAGAGGCCAAGCGAGCTCCTGCCGCCGCTCAGGCTGGTCGAGGCACCC
GCCGGTCAGCGTCGGTGAACAGGGCGTAG
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