mRNA_Ecto-sp13_S_contig64091.17174.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64091.17174.1
Unique NamemRNA_Ecto-sp13_S_contig64091.17174.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64091.17174.1 vs. uniprot
Match: E9HWB6_DAPPU (EOG090X0IKX n=17 Tax=Daphnia TaxID=6668 RepID=E9HWB6_DAPPU)

HSP 1 Score: 84.0 bits (206), Expect = 1.070e-18
Identity = 45/83 (54.22%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 GHDAKSLLFNLLDEFLFLFHSEGLAVKRTTVSGTIDRGGGKGGSGGPAPRWRLKATAEGETFDLSKHPQGTEVKAITYSNMQV 249
            G D +SLLF+LLDEFLFLF +E   + R       DR             +++ AT  GETFDL KHPQGTEVKAITYSNMQV
Sbjct:   67 GEDIQSLLFHLLDEFLFLFSAEPFFIARKVKITEFDR-----------VNFKIVATGYGETFDLKKHPQGTEVKAITYSNMQV 138
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BLAST of mRNA_Ecto-sp13_S_contig64091.17174.1 vs. uniprot
Match: A0A226EGJ3_FOLCA (Protein archease n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226EGJ3_FOLCA)

HSP 1 Score: 85.1 bits (209), Expect = 1.180e-18
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:    1 GHDAKSLLFNLLDEFLFLFHSEGLAVKRTTVSGTIDRGGGKGGSGGPAPRWRLKATAEGETFDLSKHPQGTEVKAITYSNMQ 246
            GHD  SLLF  LDEFLF+F+++   + R     + DR             +++KA   GETFD+SKHPQGTEVKAITYSNMQ
Sbjct:  117 GHDMLSLLFGFLDEFLFIFNADPFFIARKITITSFDR-----------DNFKIKAVGHGETFDISKHPQGTEVKAITYSNMQ 187
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BLAST of mRNA_Ecto-sp13_S_contig64091.17174.1 vs. uniprot
Match: T1ELH7_HELRO (Archease domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1ELH7_HELRO)

HSP 1 Score: 82.0 bits (201), Expect = 1.780e-18
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 GHDAKSLLFNLLDEFLFLFHSEGLAVKRTTVSGTIDRGGGKGGSGGPAPRWRLKATAEGETFDLSKHPQGTEVKAITYSNMQV 249
            G D +SLLF+ LDEFLFLF +E   + R     T DR             ++++A   GE FD++KHPQGTEVKAITYSNMQV
Sbjct:   19 GDDMQSLLFHFLDEFLFLFSAEPFFIARRVEIKTFDR-----------ENFKIEAVGHGEPFDIAKHPQGTEVKAITYSNMQV 90
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BLAST of mRNA_Ecto-sp13_S_contig64091.17174.1 vs. uniprot
Match: A0A8J2LQB8_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2LQB8_9HEXA)

HSP 1 Score: 83.6 bits (205), Expect = 3.320e-18
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 GHDAKSLLFNLLDEFLFLFHSEGLAVKRTTVSGTIDRGGGKGGSGGPAPRWRLKATAEGETFDLSKHPQGTEVKAITYSNMQV 249
            GHD  SLL+  LDEFLF+F ++   + R     + DR             +++ AT  GETFDL+KHPQGTEVKAITYSNMQV
Sbjct:  101 GHDLLSLLYGFLDEFLFIFSADPFFIARKVTINSFDR-----------ENFKIVATGFGETFDLNKHPQGTEVKAITYSNMQV 172
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BLAST of mRNA_Ecto-sp13_S_contig64091.17174.1 vs. uniprot
Match: A0A2V3IP05_9FLOR (Protein archease-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP05_9FLOR)

HSP 1 Score: 83.6 bits (205), Expect = 3.770e-18
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:    1 GHDAKSLLFNLLDEFLFLFHSEGLAVKRTTVSGTIDRGGGKGGSGGPAPRWRLKATAEGETFDLSKHPQGTEVKAITYSNMQV 249
            GHD +SLLFNL+DE L++FH+E    KR  V  ++D              W +KAT +G +FD S+H QGTEVKAITYSNMQ+
Sbjct:  108 GHDEQSLLFNLMDECLYVFHTEQFVTKRVIVQ-SLD-----------TFTWEIKATLQGGSFDSSRHSQGTEVKAITYSNMQI 178
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BLAST of mRNA_Ecto-sp13_S_contig64091.17174.1 vs. uniprot
Match: A0A6L5DAT2_9INSE (Archease domain-containing protein n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5DAT2_9INSE)

HSP 1 Score: 81.6 bits (200), Expect = 1.190e-17
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 GHDAKSLLFNLLDEFLFLFHSEGLAVKRTTVSGTIDRGGGKGGSGGPAPRWRLKATAEGETFDLSKHPQGTEVKAITYSNMQV 249
            GHD  SLLF+ LDE LF+F +E   V R       DR             W+++A + GE FD++KHPQGTEVKAITYSNMQV
Sbjct:   80 GHDMLSLLFHFLDELLFMFCAEPFLVARKVKVLEFDR-----------ENWKMRARSYGEEFDIAKHPQGTEVKAITYSNMQV 151
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BLAST of mRNA_Ecto-sp13_S_contig64091.17174.1 vs. uniprot
Match: A0A4Y7LYD1_9CRUS (EOG090X0IKX n=1 Tax=Ceriodaphnia reticulata TaxID=302197 RepID=A0A4Y7LYD1_9CRUS)

HSP 1 Score: 81.3 bits (199), Expect = 1.220e-17
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 GHDAKSLLFNLLDEFLFLFHSEGLAVKRTTVSGTIDRGGGKGGSGGPAPRWRLKATAEGETFDLSKHPQGTEVKAITYSNMQV 249
            G D +SLLF+LLDEFLFLF +E   + R     + DR             +++ AT  GE F+L KHPQGTEVKAITYSNMQV
Sbjct:   67 GEDIQSLLFHLLDEFLFLFSAEPFFIARKVKITSFDR-----------ENFKISATGFGEMFNLEKHPQGTEVKAITYSNMQV 138
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BLAST of mRNA_Ecto-sp13_S_contig64091.17174.1 vs. uniprot
Match: A0A7S3UTX1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTX1_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 2.240e-17
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:    1 GHDAKSLLFNLLDEFLFLFHSEGLAVKRTTVSGTIDRGGGKGGSGGPAPRWRLKATAEGETFDLSKHPQGTEVKAITYSNMQV 249
            GHD  SLLFN +DE LF F ++G A ++  ++ T DR             + +KA   GE FDLS+HPQGTE+KAITYSNMQ+
Sbjct:   32 GHDLHSLLFNFMDEILFSFSADGFACRQVLIT-TFDR-----------DNFIIKADGHGEMFDLSRHPQGTEIKAITYSNMQI 102
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BLAST of mRNA_Ecto-sp13_S_contig64091.17174.1 vs. uniprot
Match: A0A7R8X643_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X643_9CRUS)

HSP 1 Score: 80.1 bits (196), Expect = 2.270e-17
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 GHDAKSLLFNLLDEFLFLFHSEGLAVKRTTVSGTIDRGGGKGGSGGPAPRWRLKATAEGETFDLSKHPQGTEVKAITYSNMQV 249
            GHD  SLLF+ LDE+LF+F +E   + R       D+             +R+KA   GETFD+SKHPQG+EVKAITYSNMQV
Sbjct:   50 GHDMLSLLFHFLDEWLFVFSAEPFFIARKVKILQFDK-----------ENFRIKARGFGETFDISKHPQGSEVKAITYSNMQV 121
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BLAST of mRNA_Ecto-sp13_S_contig64091.17174.1 vs. uniprot
Match: A0A1B6GXS3_9HEMI (Archease domain-containing protein n=4 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6GXS3_9HEMI)

HSP 1 Score: 80.5 bits (197), Expect = 2.430e-17
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 GHDAKSLLFNLLDEFLFLFHSEGLAVKRTTVSGTIDRGGGKGGSGGPAPRWRLKATAEGETFDLSKHPQGTEVKAITYSNMQV 249
            GHD  SLLF+ LDEFLFLF +E   + R       D+             +++KA   GETF++ KHPQGTEVKAITYSNMQV
Sbjct:   67 GHDMLSLLFHFLDEFLFLFSAEPFFIARKVKILEFDK-----------ENFKIKARGFGETFEIGKHPQGTEVKAITYSNMQV 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64091.17174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E9HWB6_DAPPU1.070e-1854.22EOG090X0IKX n=17 Tax=Daphnia TaxID=6668 RepID=E9HW... [more]
A0A226EGJ3_FOLCA1.180e-1851.22Protein archease n=1 Tax=Folsomia candida TaxID=15... [more]
T1ELH7_HELRO1.780e-1850.60Archease domain-containing protein n=1 Tax=Helobde... [more]
A0A8J2LQB8_9HEXA3.320e-1850.60Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
A0A2V3IP05_9FLOR3.770e-1850.60Protein archease-like n=1 Tax=Gracilariopsis chord... [more]
A0A6L5DAT2_9INSE1.190e-1750.60Archease domain-containing protein n=1 Tax=Ephemer... [more]
A0A4Y7LYD1_9CRUS1.220e-1751.81EOG090X0IKX n=1 Tax=Ceriodaphnia reticulata TaxID=... [more]
A0A7S3UTX1_HETAK2.240e-1749.40Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7R8X643_9CRUS2.270e-1750.60Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A1B6GXS3_9HEMI2.430e-1750.60Archease domain-containing protein n=4 Tax=Cicadel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64091contigEcto-sp13_S_contig64091:22..516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop1
Start0
Seed ortholog score84.0
Seed ortholog evalue3.8e-14
Seed eggNOG ortholog6669.EFX63964
Model size255
Hectar predicted targeting categoryother localisation
GOsGO:0000394,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010720,GO:0010975,GO:0010976,GO:0016070,GO:0022008,GO:0030154,GO:0031344,GO:0031346,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048679,GO:0048680,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0070570,GO:0070572,GO:0071704,GO:0072669,GO:0080134,GO:0080135,GO:0090304,GO:0120035,GO:1901360,GO:1903034,GO:1903036,GO:2000026
Exons2
EggNOG free text desc.Archease protein family (MTH1598/TM1083)
EggNOG OGs39U2I@33154,3BD8T@33208,3CWE8@33213,41ZNF@6656,COG1371@1,KOG4528@2759
Cds size255
COG Functional cat.S
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463886.8761494-CDS-Ecto-sp13_S_contig64091:21..1911681463886.8761494-CDS-Ecto-sp13_S_contig64091:21..191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64091 22..191 +
1681463886.8882265-CDS-Ecto-sp13_S_contig64091:431..5161681463886.8882265-CDS-Ecto-sp13_S_contig64091:431..516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64091 432..516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64091.17174.1prot_Ecto-sp13_S_contig64091.17174.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64091 22..516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64091.17174.1

>prot_Ecto-sp13_S_contig64091.17174.1 ID=prot_Ecto-sp13_S_contig64091.17174.1|Name=mRNA_Ecto-sp13_S_contig64091.17174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
GHDAKSLLFNLLDEFLFLFHSEGLAVKRTTVSGTIDRGGGKGGSGGPAPR
WRLKATAEGETFDLSKHPQGTEVKAITYSNMQVK*
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mRNA from alignment at Ecto-sp13_S_contig64091:22..516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64091.17174.1 ID=mRNA_Ecto-sp13_S_contig64091.17174.1|Name=mRNA_Ecto-sp13_S_contig64091.17174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64091:22..516+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCATGATGCCAAGTCTCTGCTGTTCAATCTCCTGGACGAGTTCCTCTT
CCTCTTCCACTCCGAGGGGCTGGCGGTGAAAAGGACCACCGTGAGCGGCA
CGATCGACAGGGGTGGGGGGAAGGGGGGGAGCGGCGGCCCCGCCCCGCGT
TGGAGGCTCAAGGCGACGGCGTAAGTGGAGTGCCGCGTTTATTGTCCCAT
CCCGCATCGGCCCGCGATTTTTTTTCGCGAGAAAGAAGAGAATAGCCCCC
CCCCCCTCGTCCGATGTTCCAAGTGTCGATCAGACGCGATGCGGCGGGGC
GCTGTTGTCCCCCAATCCATACTACCCCCCCGCCCCGCCCCCTGTCCTTC
TTCCCCACACATAGCTGCCACGCGCCGCCCCAACTTTATTATTTTTGGCT
GTTTGAGCAGGGAGGGGGAAACGTTCGACTTGTCCAAGCACCCACAGGGG
ACGGAGGTGAAGGCTATCACGTACTCCAACATGCAGGTAAAATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64091:22..516+

>mRNA_Ecto-sp13_S_contig64091.17174.1 ID=mRNA_Ecto-sp13_S_contig64091.17174.1|Name=mRNA_Ecto-sp13_S_contig64091.17174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64091:22..516+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCATGATGCCAAGTCTCTGCTGTTCAATCTCCTGGACGAGTTCCTCTT
CCTCTTCCACTCCGAGGGGCTGGCGGTGAAAAGGACCACCGTGAGCGGCA
CGATCGACAGGGGTGGGGGGAAGGGGGGGAGCGGCGGCCCCGCCCCGCGT
TGGAGGCTCAAGGCGACGGCGGAGGGGGAAACGTTCGACTTGTCCAAGCA
CCCACAGGGGACGGAGGTGAAGGCTATCACGTACTCCAACATGCAGGTAA
AATAA
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