mRNA_Ecto-sp13_S_contig64058.17170.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64058.17170.1
Unique NamemRNA_Ecto-sp13_S_contig64058.17170.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64058.17170.1 vs. uniprot
Match: A0A6H5KVD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD7_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 2.330e-45
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = -2 
Query:    3 PEQTAWAQPLAAVLLTLRSLPFATLIGCLGLSIGSSNPQVNKLVRFNMQQAINLDIALILQGVVGAITAALLGADAVKLAPLANAGSDVVFVALLAAVA 299
            PEQTAWA+PL AVLL LRS+PFATLIG   LS+GSSNPQ+NKLVRFNMQQAINLDIALIL GVVGAIT A+LG+DA KLAPLANAGSDVVFVALLAAVA
Sbjct:   62 PEQTAWAEPLVAVLLALRSVPFATLIGFFSLSVGSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGSDASKLAPLANAGSDVVFVALLAAVA 160
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BLAST of mRNA_Ecto-sp13_S_contig64058.17170.1 vs. uniprot
Match: A0A6H5KUU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU9_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.910e-45
Identity = 86/99 (86.87%), Postives = 92/99 (92.93%), Query Frame = -2 
Query:    3 PEQTAWAQPLAAVLLTLRSLPFATLIGCLGLSIGSSNPQVNKLVRFNMQQAINLDIALILQGVVGAITAALLGADAVKLAPLANAGSDVVFVALLAAVA 299
            PEQTAWAQPLAAVLL LRS+PFATL+G   LS+GSSNPQ+NKLVRFNMQQAINLDIALIL GVVGAIT A+LG+DA KLAPLANAGSDVVFVALLAAVA
Sbjct:  144 PEQTAWAQPLAAVLLALRSVPFATLVGFFSLSVGSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGSDASKLAPLANAGSDVVFVALLAAVA 242
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BLAST of mRNA_Ecto-sp13_S_contig64058.17170.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 9.480e-45
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = -2 
Query:    3 PEQTAWAQPLAAVLLTLRSLPFATLIGCLGLSIGSSNPQVNKLVRFNMQQAINLDIALILQGVVGAITAALLGADAVKLAPLANAGSDVVFVALLAAVA 299
            PEQTAWAQPLAAVLL LRSLPFATLIG   LSIGSSNP+VNKLVRFNMQQAINLDIALIL GVVGAIT  +LGADAVKLAPL+NAGSDVVFVALLAAVA
Sbjct:  281 PEQTAWAQPLAAVLLALRSLPFATLIGFFSLSIGSSNPRVNKLVRFNMQQAINLDIALILPGVVGAITGGMLGADAVKLAPLSNAGSDVVFVALLAAVA 379
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BLAST of mRNA_Ecto-sp13_S_contig64058.17170.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 4.110e-42
Identity = 86/99 (86.87%), Postives = 90/99 (90.91%), Query Frame = -2 
Query:    3 PEQTAWAQPLAAVLLTLRSLPFATLIGCLGLSIGSSNPQVNKLVRFNMQQAINLDIALILQGVVGAITAALLGADAVKLAPLANAGSDVVFVALLAAVA 299
            PEQTAWAQPLAAVLL LRS+PFATLIG   LSI SSNPQ+NKLVRFNMQQAINLDIALIL GVVGAIT A+LG+DA KLAPLANA SDVVFVALLAAVA
Sbjct:  281 PEQTAWAQPLAAVLLALRSVPFATLIGFFSLSIWSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGSDASKLAPLANASSDVVFVALLAAVA 379
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BLAST of mRNA_Ecto-sp13_S_contig64058.17170.1 vs. uniprot
Match: A0A6H5JBJ0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ0_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.410e-37
Identity = 81/97 (83.51%), Postives = 85/97 (87.63%), Query Frame = -2 
Query:    3 TAWAQPLAAVLLTLRSLPFATLIGCLGLSIGS-SNPQVNKLVRFNMQQAINLDIALILQGVVGAITAALLGADAVKLAPLANAGSDVVFVALLAAVA 290
            TAWAQPLAAVLL LRS+PFATLIG   LS+    NPQVNKLVRFN QQAIN+DIALIL GVVGAI  A+LGADAVKLAPLANAGSDVVFVALLAAVA
Sbjct:  176 TAWAQPLAAVLLALRSVPFATLIGFFSLSVHRLRNPQVNKLVRFNTQQAINVDIALILPGVVGAIAGAVLGADAVKLAPLANAGSDVVFVALLAAVA 272
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BLAST of mRNA_Ecto-sp13_S_contig64058.17170.1 vs. uniprot
Match: A0A2I6U1M4_SACJA (Tic20-like protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA)

HSP 1 Score: 138 bits (347), Expect = 4.150e-37
Identity = 78/99 (78.79%), Postives = 84/99 (84.85%), Query Frame = -2 
Query:    3 PEQTAWAQPLAAVLLTLRSLPFATLIGCLGLSIGSSNPQVNKLVRFNMQQAINLDIALILQGVVGAITAALLGADAVKLAPLANAGSDVVFVALLAAVA 299
            PEQTAWAQPLAAVLL LRSLPFATL+G   LS  S NPQVNKLVRFNMQQAINLDIALI+ GV+GA+ +  LG DA KL PLA AGSDVVFVA+LAAVA
Sbjct:  282 PEQTAWAQPLAAVLLALRSLPFATLVGFFSLSALSGNPQVNKLVRFNMQQAINLDIALIVPGVLGALASVSLGQDAYKLVPLAEAGSDVVFVAMLAAVA 380
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BLAST of mRNA_Ecto-sp13_S_contig64058.17170.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.040e-25
Identity = 57/64 (89.06%), Postives = 59/64 (92.19%), Query Frame = -2 
Query:  105 EQTAWAQPLAAVLLTLRSLPFATLIGCLGLSIGSSNPQVNKLVRFNMQQAINLDIALILQGVVG 296
            EQTAWAQPLAAVLL LRS+PFATLIG   LSIGSSNPQ+NKLVRFNMQQAINLDIALIL GVVG
Sbjct:  282 EQTAWAQPLAAVLLALRSVPFATLIGFFSLSIGSSNPQINKLVRFNMQQAINLDIALILPGVVG 345
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BLAST of mRNA_Ecto-sp13_S_contig64058.17170.1 vs. uniprot
Match: A0A6H5JY95_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY95_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.440e-21
Identity = 50/99 (50.51%), Postives = 73/99 (73.74%), Query Frame = -2 
Query:    3 PEQTAWAQPLAAVLLTLRSLPFATLIGCLGLSIGSSNPQVNKLVRFNMQQAINLDIALILQGVVGAITAALLGADAVKLAPLANAGSDVVFVALLAAVA 299
            P+Q AW++PL A+L+ + +LPFATL+   G+SI SSN  +NKL+RFNM QAIN DIALI+  V G +    LG+DA K++P+ +  +D++ V+L+ AVA
Sbjct:  277 PQQMAWSEPLVAILIAVNNLPFATLVAFFGMSILSSNQNINKLLRFNMLQAINFDIALIVPSVFGPLLTWSLGSDAYKISPVTDIATDILSVSLVLAVA 375
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BLAST of mRNA_Ecto-sp13_S_contig64058.17170.1 vs. uniprot
Match: D8LTM8_ECTSI (TIC 20 related, plastid import n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM8_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.870e-16
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = -2 
Query:    6 PEQTAWAQPLAAVLLTLRSLPFATLIGCLGLSIGSSNPQVNKLVRFNMQQAINLDIALILQGVVGAITAALLGADAVKLAPLANAGSDVVFVALLAAV 299
            P Q ++ +PL A+LL  RSLPF+ LI   GL   ++ P+VNKLVRFN++QA+ LDIA+    +   I  ++LG D+ KLAPLA   +DV+FV ++A V
Sbjct:  296 PTQLSFLEPLVAILLIYRSLPFSGLILFFGLQWFAAKPEVNKLVRFNLRQAVILDIAMFFPSIFAFIITSVLGEDSAKLAPLATVCNDVIFVTVVACV 393
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BLAST of mRNA_Ecto-sp13_S_contig64058.17170.1 vs. uniprot
Match: A0A6H5KCI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.530e-16
Identity = 56/99 (56.57%), Postives = 58/99 (58.59%), Query Frame = -2 
Query:    3 PEQTAWAQPLAAVLLTLRSLPFATLIGCLGLSIGSSNPQVNKLVRFNMQQAINLDIALILQGVVGAITAALLGADAVKLAPLANAGSDVVFVALLAAVA 299
            PEQTAWAQPLAA                                      AIN+DIALIL GVVGAI  A+LGADAVKLAPLANAGSDVVFVALLAAVA
Sbjct:  145 PEQTAWAQPLAA--------------------------------------AINVDIALILPGVVGAIAGAVLGADAVKLAPLANAGSDVVFVALLAAVA 205
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64058.17170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVD7_9PHAE2.330e-4585.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUU9_9PHAE2.910e-4586.87Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FRG5_ECTSI9.480e-4589.90EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
D8LS19_ECTSI4.110e-4286.87EF-hand domain-containing protein n=7 Tax=Ectocarp... [more]
A0A6H5JBJ0_9PHAE1.410e-3783.51EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A2I6U1M4_SACJA4.150e-3778.79Tic20-like protein n=15 Tax=Saccharina japonica Ta... [more]
D8LS20_ECTSI1.040e-2589.06EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JY95_9PHAE5.440e-2150.51EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
D8LTM8_ECTSI1.870e-1647.96TIC 20 related, plastid import n=2 Tax=Ectocarpus ... [more]
A0A6H5KCI4_9PHAE6.530e-1656.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64058contigEcto-sp13_S_contig64058:73..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size303
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionTIC 20 related, plastid import
Ec32 orthologEc-08_001780.2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463886.513188-CDS-Ecto-sp13_S_contig64058:72..3721681463886.513188-CDS-Ecto-sp13_S_contig64058:72..372Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64058 73..372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64058.17170.1prot_Ecto-sp13_S_contig64058.17170.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64058 73..372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64058.17170.1

>prot_Ecto-sp13_S_contig64058.17170.1 ID=prot_Ecto-sp13_S_contig64058.17170.1|Name=mRNA_Ecto-sp13_S_contig64058.17170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
YATAANNATNTTSDPAFARGASLTASAPNSAAVIAPTTPCKIRAMSRLMA
CCMLNLTSLLTCGLLEPMDRPKQPIRVANGNDRSVSSTAASGCAHAVCSG
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mRNA from alignment at Ecto-sp13_S_contig64058:73..374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64058.17170.1 ID=mRNA_Ecto-sp13_S_contig64058.17170.1|Name=mRNA_Ecto-sp13_S_contig64058.17170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=302bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64058:73..374+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACGCCACGGCCGCCAACAACGCCACAAACACCACGTCCGACCCCGCGTT
CGCCAGAGGCGCCAGCTTGACAGCGTCGGCCCCCAACAGCGCCGCCGTGA
TCGCACCCACCACCCCCTGCAAGATCAGAGCGATGTCCAGGTTGATGGCC
TGCTGCATGTTGAACCTCACGAGCTTGTTGACCTGCGGGTTGCTGGAGCC
GATGGACAGACCTAAACAGCCTATCAGAGTCGCGAACGGCAACGACCGCA
GCGTCAGCAGCACAGCGGCCAGCGGCTGCGCCCACGCCGTCTGCTCCGGG
AA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64058:73..374+

>mRNA_Ecto-sp13_S_contig64058.17170.1 ID=mRNA_Ecto-sp13_S_contig64058.17170.1|Name=mRNA_Ecto-sp13_S_contig64058.17170.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64058:73..374+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACGCCACGGCCGCCAACAACGCCACAAACACCACGTCCGACCCCGCGTT
CGCCAGAGGCGCCAGCTTGACAGCGTCGGCCCCCAACAGCGCCGCCGTGA
TCGCACCCACCACCCCCTGCAAGATCAGAGCGATGTCCAGGTTGATGGCC
TGCTGCATGTTGAACCTCACGAGCTTGTTGACCTGCGGGTTGCTGGAGCC
GATGGACAGACCTAAACAGCCTATCAGAGTCGCGAACGGCAACGACCGCA
GCGTCAGCAGCACAGCGGCCAGCGGCTGCGCCCACGCCGTCTGCTCCGGG
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