mRNA_Ecto-sp13_S_contig6401.17165.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6401.17165.1
Unique NamemRNA_Ecto-sp13_S_contig6401.17165.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6401.17165.1 vs. uniprot
Match: A0A6H5K6K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.660e-5
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 2 
Query:  182 CENPLPDGLELPPSLE*IKFGSYFNHTIAGVKWSLSL 292
            C+ P PDGLELP SL+ +KFG +F  TIAGVKW  SL
Sbjct:  104 CQEPPPDGLELPASLQELKFGGHFYKTIAGVKWPQSL 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6401.17165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K6K5_9PHAE1.660e-564.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6401contigEcto-sp13_S_contig6401:5413..6268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size681
Hectar predicted targeting categoryother localisation
Exons2
Cds size420
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463886.0995374-UTR-Ecto-sp13_S_contig6401:5412..55361681463886.0995374-UTR-Ecto-sp13_S_contig6401:5412..5536Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6401 5413..5536 -
1681463886.1412315-UTR-Ecto-sp13_S_contig6401:6131..62681681463886.1412315-UTR-Ecto-sp13_S_contig6401:6131..6268Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6401 6132..6268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463886.1158614-CDS-Ecto-sp13_S_contig6401:5536..59141681463886.1158614-CDS-Ecto-sp13_S_contig6401:5536..5914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6401 5537..5914 -
1681463886.1296034-CDS-Ecto-sp13_S_contig6401:6089..61311681463886.1296034-CDS-Ecto-sp13_S_contig6401:6089..6131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6401 6090..6131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6401.17165.1prot_Ecto-sp13_S_contig6401.17165.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6401 5537..6131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6401.17165.1

>prot_Ecto-sp13_S_contig6401.17165.1 ID=prot_Ecto-sp13_S_contig6401.17165.1|Name=mRNA_Ecto-sp13_S_contig6401.17165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MPLDRVGRARKQYEPARILCRMGLSCRRPLSKSSSGHISTTPSLESSGRC
PSRSSNWGIILISLLLESSGQPHYCSYCSVLTSTNLSRESSGRRTSSSSN
SGIILSSPLLGSCSRPPCRSYCLVFISTIQLLESCGRLH*
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mRNA from alignment at Ecto-sp13_S_contig6401:5413..6268-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6401.17165.1 ID=mRNA_Ecto-sp13_S_contig6401.17165.1|Name=mRNA_Ecto-sp13_S_contig6401.17165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=856bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6401:5413..6268- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCGACGCCAATATGATGGCGGCTCTCTATTATCAGCGGTTCGTGTTG
ACCAAGCAGCTCCAATGCTAGTCATTGGAGCCGAACAAGGCGTGCCGGCG
CGAATCGGCTTTGGTCGTGACAGTTGGCGTAGACTACATGCCCCTCGACC
GCGTGGGTCGCGCAAGGAAGCAATACGAGGTGGGAGTGCGCCGGGCGATG
GCCGGAAAAACGATGACCGGGCCAGGCGTTATGCCGGCGTCAAGGGTTCC
ACAAATTGTTCCGCGCGATCTGGTATGATGCATGGATGTAAATGCACTCG
AACAGGGTGAAGTTGACTTCACTTGCGTTCGTTTCCTGCCACTCACCGCG
ACAGCCTGCGAGAATCCTCTGCCGGATGGGCTTGAGTTGCCGCCGTCCCT
TGAGTAAATCAAGTTCGGGTCATATTTCAACCACACCATCGCTGGAGTCA
AGTGGTCGCTGTCCCTCAAGGAGCTCGAATTGGGGGATTATTTTGATCAG
CCTATTGTTGGAGTCGAGTGGCCAGCCTCACTACTGCAGCTATTGCTCGG
TGTTAACTTCAACCAACCTATCGCGGGAGTCAAGTGGTCGCCGTACCTCA
AGCAGCTCCAACTCGGGCATTATTTTAAGCAGCCCATTGCTGGGGTCGTG
CAGCCGGCCTCCCTGCAGGAGCTATTGTTTGGTGTTCATTTCAACCATTC
AATTGCTGGAGTCGTGTGGCCGCCTTCATTGAAGCGGCTCCAGTTCGGTT
CATATTCGAACCAACCGCTCGCTGATGTCGCGTGGTAGACTTCCCTGAAG
TGCCTCTATTCCGGGTACAACGAAGGATAGAATCAGTATGAGATTCATAT
TGCCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6401:5413..6268-

>mRNA_Ecto-sp13_S_contig6401.17165.1 ID=mRNA_Ecto-sp13_S_contig6401.17165.1|Name=mRNA_Ecto-sp13_S_contig6401.17165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6401:5413..6268- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCTCGACCGCGTGGGTCGCGCAAGGAAGCAATACGAGCCTGCGAG
AATCCTCTGCCGGATGGGCTTGAGTTGCCGCCGTCCCTTGAGTAAATCAA
GTTCGGGTCATATTTCAACCACACCATCGCTGGAGTCAAGTGGTCGCTGT
CCCTCAAGGAGCTCGAATTGGGGGATTATTTTGATCAGCCTATTGTTGGA
GTCGAGTGGCCAGCCTCACTACTGCAGCTATTGCTCGGTGTTAACTTCAA
CCAACCTATCGCGGGAGTCAAGTGGTCGCCGTACCTCAAGCAGCTCCAAC
TCGGGCATTATTTTAAGCAGCCCATTGCTGGGGTCGTGCAGCCGGCCTCC
CTGCAGGAGCTATTGTTTGGTGTTCATTTCAACCATTCAATTGCTGGAGT
CGTGTGGCCGCCTTCATTGA
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