mRNA_Ecto-sp13_S_contig64.17162.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig64.17162.1
Unique NamemRNA_Ecto-sp13_S_contig64.17162.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig64.17162.1 vs. uniprot
Match: D7FXC8_ECTSI (SANT_DAMP1_like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC8_ECTSI)

HSP 1 Score: 474 bits (1221), Expect = 2.640e-166
Identity = 235/238 (98.74%), Postives = 237/238 (99.58%), Query Frame = 1 
Query:    1 MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREVYALLGSEGLPPEGPVSNPSLVKDGSQQDPASSKQPCSKWKWVPFTSSARSDGATFEHWQKESDEKDSGDYAYARYNVKVDIDNHLRYSDEEYKQHLTEASWTKLETDHLVAMALKYDLRWPVIKDRYKCTPDRPVQELQQRFYDVANRLQTVRRTASNGAGGGSLLTMPGLTAFNATHEAE 714
            MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREVYALLGSEGLPPEGPVSNPSLV+DGSQQDPASSKQPCSKWKWVPF+SSARSDGATFEHWQKESDEKDSGDYAYARYNVKVDIDNHLRYSDEEYKQHLTEASWTKLETDHLVAMALKYDLRWPVIKDRYKCTPDRPVQELQQRFYDVANRLQ VRRTASNGAGGGSLLTMPGLTAFNATHEAE
Sbjct:    1 MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREVYALLGSEGLPPEGPVSNPSLVRDGSQQDPASSKQPCSKWKWVPFSSSARSDGATFEHWQKESDEKDSGDYAYARYNVKVDIDNHLRYSDEEYKQHLTEASWTKLETDHLVAMALKYDLRWPVIKDRYKCTPDRPVQELQQRFYDVANRLQAVRRTASNGAGGGSLLTMPGLTAFNATHEAE 238
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BLAST of mRNA_Ecto-sp13_S_contig64.17162.1 vs. uniprot
Match: A0A6H5JTR5_9PHAE (SANT_DAMP1_like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTR5_9PHAE)

HSP 1 Score: 456 bits (1174), Expect = 1.980e-161
Identity = 235/262 (89.69%), Postives = 236/262 (90.08%), Query Frame = 1 
Query:    1 MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREVYALLGSEGLPPEGPVSNPSLVKDGSQQDPASSKQPCSKWKWVPFTSSARSDGATFEHWQKESDEKDSGDYAYARYNVKVDIDNHLRYSDEEYKQHLT-------------------EASWTKLETDHLVAMALKYDLRWPVIKDRYKCTPDRPVQELQQRFYDVANRLQ-----TVRRTASNGAGGGSLLTMPGLTAFNATHEAE 714
            MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREV+ALLGSEGLPPEGPVSNPSLVKDGSQQDPASSKQPCSKWKWVPFTSSARSDGATFEHWQKESDEKDSGDYAYARYNVKVDIDNHLRYSDEEYKQHLT                   EASWTKLETDHLVAMALKYDLRWP IKDRYKCTPDRP QELQQRFYDVANRLQ     TVRRTASNGAGGGSLLTMPGLTAFNATHEAE
Sbjct:    1 MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREVHALLGSEGLPPEGPVSNPSLVKDGSQQDPASSKQPCSKWKWVPFTSSARSDGATFEHWQKESDEKDSGDYAYARYNVKVDIDNHLRYSDEEYKQHLTVSWRKWMFDFVEGFVGLYTEASWTKLETDHLVAMALKYDLRWPAIKDRYKCTPDRPAQELQQRFYDVANRLQVASHTTVRRTASNGAGGGSLLTMPGLTAFNATHEAE 262
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BLAST of mRNA_Ecto-sp13_S_contig64.17162.1 vs. uniprot
Match: A0A835YGE4_9STRA (Myb-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGE4_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.980e-43
Identity = 104/250 (41.60%), Postives = 136/250 (54.40%), Query Frame = 1 
Query:    1 MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREVYALLGSEGLPPEGPVSNPSLVKDGSQQDPASSKQPCSKWKWVPFTSSARSDGATFEHWQKESDEKDSGDYAYARYNVKVDIDNHLRYSDEEYKQHLTEASWTKLETDHLVAMALKYDLRWPVIKDRYKCTPDRPVQELQQRFYDVANRLQTVRRTASNGAGGGS--------------LLTMPGLTAFNATHE 708
            MGDVAD+LG+    AP   A   LGG      + K+G+      +KA KP G+SREVYALLG +GLPP  P   PS    G             +W+WV F +SAR+D  TF HW K S +    DYAYA+YNVK +    + YSD EY++ L  + WT+ ETD L+ +  ++DL WPVI DR++    RPV+ LQ+RFYDV  +L+  R      AGGG               LL  PG  AF+  +E
Sbjct:    1 MGDVADLLGVERAEAPDPLAL-ALGG------KTKKGE------RKAAKPVGMSREVYALLGEQGLPPSMPTKKPSAKGGGGV-----------RWEWVEFANSARADNVTFFHWVKASAQHP--DYAYAKYNVKTEA---VTYSDGEYERLLRASDWTRAETDQLMRLCARHDLCWPVIADRFEARAARPVESLQERFYDVVAKLRAAR------AGGGKXXXXXXXXXXXIGGLLAAPGADAFDREYE 215
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BLAST of mRNA_Ecto-sp13_S_contig64.17162.1 vs. uniprot
Match: A0A6H5K284_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K284_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 5.460e-38
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREVYALLGSEGLPPE 207
            MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREV+ALLGSEGLPPE
Sbjct:    1 MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREVHALLGSEGLPPE 69
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BLAST of mRNA_Ecto-sp13_S_contig64.17162.1 vs. uniprot
Match: A0A7R9Y843_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y843_9STRA)

HSP 1 Score: 138 bits (347), Expect = 4.090e-37
Identity = 90/218 (41.28%), Postives = 122/218 (55.96%), Query Frame = 1 
Query:    1 MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKG-GAAPIKKAGKPQGVSREVYALLGSEGLPPEGPVSNPSLVKDGSQQDPASSKQPCSKWKWVPFTSSARSDGATFEHWQKESDEKDSGDYAYARYNVKVDIDNHLRYSDEEYKQHLTEASWTKLETDHLVAMALKYDLRWPVIKDRYKCTPDRPVQELQQRFYDVANRLQTVRRTASNGA 651
            MGDVA ILG+G              G   P   + + K  G    +KA KP G+SREV++LLG+ GLP   P  +    K G  +    + Q   KWKW  F +SAR D  + +HWQK S E    DY ++R+NV ++    + YSDEEY + L   SWT+ ETD+L+ +  +YDLRWPVI DRY  TP R V+++Q+R+YDV   L   R  A+  A
Sbjct:    1 MGDVAAILGMG------------ANGAKDPKDASNQNKSTGRKRDRKAVKPAGMSREVFSLLGAGGLPSLAPAGD---AKGGHFKRRRVTGQE-GKWKWTTFKNSARGDKFSAKHWQKASVEYP--DYPFSRFNVSLES---VVYSDEEYDKVLASGSWTRSETDYLMILCQRYDLRWPVIADRYTLTPLRAVEDMQKRYYDVVRALILYRTEAAKAA 197
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BLAST of mRNA_Ecto-sp13_S_contig64.17162.1 vs. uniprot
Match: A0A6H5KY77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY77_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 5.000e-36
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:  208 GPVSNPSLVKDGSQQDPASSKQPCSKWKWVPFTSSARSDGATFEHWQKESDEKDSGDYAYAR 393
            GPVSNPSLVKDGSQQDPASSKQPCSKWKWVPFTSSARSDGATFEHWQKESDEKDSGDYAYAR
Sbjct:   10 GPVSNPSLVKDGSQQDPASSKQPCSKWKWVPFTSSARSDGATFEHWQKESDEKDSGDYAYAR 71
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BLAST of mRNA_Ecto-sp13_S_contig64.17162.1 vs. uniprot
Match: A0A6J1S6K2_FRAOC (DNA methyltransferase 1-associated protein 1-like n=2 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1S6K2_FRAOC)

HSP 1 Score: 137 bits (346), Expect = 1.370e-34
Identity = 87/218 (39.91%), Postives = 128/218 (58.72%), Query Frame = 1 
Query:    1 MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREVYALL--GSEGLPPEGPVSNPSLVKDGSQQDPASSKQPCSKWKWVPFTSSARSDGATFEHWQKESDEKDSGDYAYARYNVKVDIDNHLRYSDEEYKQHLTEASWTKLETDHLVAMALKYDLRWPVIKDRY---KCTPDRPVQELQQRFYDVANRLQTVRRTA 639
            MGDV DILGL  PP P      +LG       + K+ +   +  K + +P+G+ REV+ALL   S+G+PP  P       K    +      +P   WKW+PFT+  R+DGA F HW++ +DE    +Y +A++N KV + +   Y+D+EY QHL    WTK ET+HL+ +A ++DLR+ V+KDR+   K T DR V+EL++RFY +   L  VR T+
Sbjct:    1 MGDVQDILGLERPPTPELTKEAILGS----SDKLKKKQMQMSTPKVSKRPEGMPREVFALLCNDSKGVPPVFPTDTGQGYKQTKAKLGMRKVRP---WKWMPFTNPGRTDGAVFHHWRRVADE--GKEYPFAKFNKKVPVPS---YTDDEYNQHLQTTGWTKEETNHLIDLAKRFDLRFIVMKDRFDKEKFT-DRSVEELKERFYTIQTTLTKVRSTS 205
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BLAST of mRNA_Ecto-sp13_S_contig64.17162.1 vs. uniprot
Match: A0A7S2S7D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7D5_9STRA)

HSP 1 Score: 136 bits (343), Expect = 4.470e-34
Identity = 87/219 (39.73%), Postives = 117/219 (53.42%), Query Frame = 1 
Query:    1 MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREVYALLGSEGLPP--EGPVSN----PSLVKDGSQQDPASSKQP--CSKWKWVPFTSSARSDGATFEHWQKESDEKDSGDYAYARYNVKVDIDNHLRYSDEEYKQHLTEASWTKLETDHLVAMALKYDLRWPVIKDRYKCTPDRPVQELQQRFYDVANRLQTVRR 633
            MGDV+DILG+              G PL  L  +    G      K  +P  VSREVYAL+G   +P    G  S     PS+            K+     KW+W P+ +SAR+DG  F  W K     D  DY YAR+NV++   + L Y+DEEY+ HL + SWT+ +TD LVA+  +YDLRWPVI DRY   P R +++LQ R+Y +A ++  VRR
Sbjct:    1 MGDVSDILGV------KKEKDDKKGVPLSALAGDS---GRRKKPAKTSRPPNVSREVYALMGFNAMPAGDAGDASTNPLLPSMAPAAGSMQGFKDKRSGIAQKWQWAPYQNSARTDGVEFSRWHKVG--VDYMDYPYARFNVRL---SKLEYTDEEYELHLQDPSWTRSDTDKLVALCARYDLRWPVIADRYNQIPRRSMEQLQHRYYTMAQKVLLVRR 205
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BLAST of mRNA_Ecto-sp13_S_contig64.17162.1 vs. uniprot
Match: A0A6P8ZQW7_THRPL (DNA methyltransferase 1-associated protein 1 n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8ZQW7_THRPL)

HSP 1 Score: 134 bits (336), Expect = 3.760e-33
Identity = 84/221 (38.01%), Postives = 130/221 (58.82%), Query Frame = 1 
Query:    1 MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREVYALL--GSEGLPPEGPVSNPSLVKDGSQQDPASSKQPCSKWKWVPFTSSARSDGATFEHWQKESDEKDSGDYAYARYNVKVDIDNHLRYSDEEYKQHLTEASWTKLETDHLVAMALKYDLRWPVIKDRYKCTP--DRPVQELQQRFYDVANRLQTVRRTASNGA 651
            MGDV DILGL  PP P      +LG       + KR +   +  K + +P+G+ REV+ALL   ++G+PP  P    S  K    +      +P   WKW+PF++ AR+DGA F HW++ +DE    DY +A++N KV + +   Y+DEEY QHL    WTK ET+HL+ +A ++DLR+ V++DR+  +   +R V++L++R+Y +   L  V+ T  + A
Sbjct:    1 MGDVQDILGLERPPTPELTKESILGS----SDKLKRKQMQMSTPKVSRRPEGMPREVFALLYHDNKGVPPVFPTDTGSGYKQMKAKLGMRKVRP---WKWMPFSNPARTDGAVFHHWRRVADE--GKDYPFAQFNKKVPVPS---YTDEEYNQHLQVVGWTKDETNHLIDLAKRFDLRFIVMRDRWDSSKFAERSVEDLKERYYTLQTTLGKVKGTTPSDA 209
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BLAST of mRNA_Ecto-sp13_S_contig64.17162.1 vs. uniprot
Match: A0A452ZPU4_AEGTS (Myb-like domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452ZPU4_AEGTS)

HSP 1 Score: 129 bits (325), Expect = 6.400e-33
Identity = 91/237 (38.40%), Postives = 127/237 (53.59%), Query Frame = 1 
Query:    7 DVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKPQGVSREVYALLGSEGLPPEGPVSNPSLVKDGSQQDPASSKQPCSKWKWVPFTSSARSDGATFEHWQKE-SDEKDSGDYAYARYNVKVDIDNHLRYSDEEYKQHLTEASWTKLETDHLVAMALKYDLRWPVIKDRYKCTPDRPVQELQQRFYDVANRLQTVRRTASNGAGGGSLLTMPGLTAFNATHEAE 714
            D  DILGL     PS              QE K      AP +   KP GVSREVYAL G  G+ P  P    S +K    + PA  K+  + W+W+PFTSSAR+D     HW +  ++   +GDY +A+YN KVD+   L+Y+DEEY+++LTE +W++ ETD L  +  ++DLR+ VI DR+     R V++L+ R+Y V   L   R  + +   G  L+       FNA HE E
Sbjct:   46 DAKDILGLQKTSFPS-------------AQEKKP----RAPKEPQRKPDGVSREVYALTGGVGMAPLMPTIEASHLK----RRPAVEKEKVA-WQWLPFTSSARTDNLQLYHWVRVVNNVPPTGDYDFAKYNTKVDV---LKYTDEEYEKYLTEPTWSREETDQLFELCQRFDLRFIVIADRFPTA--RSVEDLKSRYYSVTRALLIARARSFDEVAGNPLVK----ETFNAAHETE 251
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig64.17162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXC8_ECTSI2.640e-16698.74SANT_DAMP1_like domain-containing protein n=1 Tax=... [more]
A0A6H5JTR5_9PHAE1.980e-16189.69SANT_DAMP1_like domain-containing protein n=1 Tax=... [more]
A0A835YGE4_9STRA5.980e-4341.60Myb-like domain-containing protein n=1 Tax=Tribone... [more]
A0A6H5K284_9PHAE5.460e-3898.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9Y843_9STRA4.090e-3741.28Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A6H5KY77_9PHAE5.000e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6J1S6K2_FRAOC1.370e-3439.91DNA methyltransferase 1-associated protein 1-like ... [more]
A0A7S2S7D5_9STRA4.470e-3439.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6P8ZQW7_THRPL3.760e-3338.01DNA methyltransferase 1-associated protein 1 n=1 T... [more]
A0A452ZPU4_AEGTS6.400e-3338.40Myb-like domain-containing protein n=1 Tax=Aegilop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig64contigEcto-sp13_S_contig64:40000..44757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score481.1
Seed ortholog evalue3e-133
Seed eggNOG ortholog2880.D7FXC8
Preferred nameSWC4
Model size714
KEGG koko:K11324,ko:K13865,ko:K21412
KEGG TC2.A.3.3.5
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000812,GO:0000981,GO:0001085,GO:0001103,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006305,GO:0006306,GO:0006325,GO:0006338,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032259,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0032991,GO:0033157,GO:0033554,GO:0034641,GO:0034728,GO:0035267,GO:0036211,GO:0042306,GO:0042307,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044728,GO:0045892,GO:0045934,GO:0046483,GO:0046822,GO:0046824,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051222,GO:0051223,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070491,GO:0070603,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090087,GO:0090304,GO:0090316,GO:0097159,GO:0097346,GO:0140110,GO:1900180,GO:1900182,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904949,GO:1904951,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Exons6
EggNOG free text desc.histone H2A acetylation
EggNOG OGsKOG2656@1,KOG2656@2759
Ec32 ortholog descriptionDNA methyltransferase 1-associated protein 1
Ec32 orthologEc-04_000140.1
Cds size714
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig64.17162.1prot_Ecto-sp13_S_contig64.17162.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig64 40000..44757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463885.617756-CDS-Ecto-sp13_S_contig64:39999..402061681463885.617756-CDS-Ecto-sp13_S_contig64:39999..40206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64 40000..40206 +
1681463885.6431959-CDS-Ecto-sp13_S_contig64:41482..415621681463885.6431959-CDS-Ecto-sp13_S_contig64:41482..41562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64 41483..41562 +
1681463885.6578507-CDS-Ecto-sp13_S_contig64:42034..421391681463885.6578507-CDS-Ecto-sp13_S_contig64:42034..42139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64 42035..42139 +
1681463885.681739-CDS-Ecto-sp13_S_contig64:43126..431961681463885.681739-CDS-Ecto-sp13_S_contig64:43126..43196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64 43127..43196 +
1681463885.6919045-CDS-Ecto-sp13_S_contig64:44090..442491681463885.6919045-CDS-Ecto-sp13_S_contig64:44090..44249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64 44091..44249 +
1681463885.7038062-CDS-Ecto-sp13_S_contig64:44664..447571681463885.7038062-CDS-Ecto-sp13_S_contig64:44664..44757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig64 44665..44757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig64.17162.1

>prot_Ecto-sp13_S_contig64.17162.1 ID=prot_Ecto-sp13_S_contig64.17162.1|Name=mRNA_Ecto-sp13_S_contig64.17162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp
MGDVADILGLGGPPAPSGRASPVLGGPLGPLQENKRGKGGAAPIKKAGKP
QGVSREVYALLGSEGLPPEGPVSNPSLVKDGSQQDPASSKQPCSKWKWVP
FTSSARSDGATFEHWQKESDEKDSGDYAYARYNVKVDIDNHLRYSDEEYK
QHLTEASWTKLETDHLVAMALKYDLRWPVIKDRYKCTPDRPVQELQQRFY
DVANRLQTVRRTASNGAGGGSLLTMPGLTAFNATHEAE
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mRNA from alignment at Ecto-sp13_S_contig64:40000..44757+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig64.17162.1 ID=mRNA_Ecto-sp13_S_contig64.17162.1|Name=mRNA_Ecto-sp13_S_contig64.17162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4758bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64:40000..44757+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGATGTGGCCGACATCCTCGGGCTTGGAGGTCCACCAGCGCCGTC
CGGAAGGGCATCGCCCGTGCTAGGTGGCCCATTGGGCCCCCTCCAAGAAA
ACAAGCGGGGTAAGGGTGGAGCGGCTCCGATCAAGAAGGCCGGCAAGCCC
CAGGGTGTCAGCCGGGAGGTTTACGCCTTGCTAGGATCGGAGGGGCTGCC
GCCGGAAGTGAGTAGTGTGGAGTGTGCTGGACCCTTGCGGGGTCTTGAAT
AGATGAAGAGAACTGCTGTTGCTCATGATATTGTCTTTGCATTTGGTGCG
GGTCCGCTTGGAACCCGAACCGCATGTTTGAACCCCACCGGGTTTAGTCA
CGCCGCATTTTTGAGATCTTCTGCTGTACGGGACAGCATGTCCTCTATCC
CATGTATGTATTGATGCCCGTGATGTTGTCATATGGACGGTGTTTGAGTC
CACTTACACCGGACACCTGAAAATTTCCACGTATGTTGGTAGCCGGGGTG
AAAGCAAGGCGGGTTTGAATCGCGCCGCATTTATACCTTTTTGCTTGTAT
TGCCCTTTTGAACCGCGTCCGGTGTACGAGGGGAGTGGCCGCGCACATAT
CGTAGACACAACGTTATCCTTACTACTTGGGGAGCGCTCGGCGGCCTTTG
CTTCGCGTTTGCTCTTTGAACGTCATACCACAAGATTTTTGCCAGGCACA
AGGTTTCAAAAGCTGTTACACAGGGGAGATATCGCTGTGCGCTGCTCGGG
AAATGGTGCAAGTACGGGTCTTCTTAACGCTATGACTTCCTAATCTATCT
TACTCTTTCCTTAGAGATGGATTCGTTGGTCATGTTTAGAAAAACAAACA
AATTACATGCACGTAGTTTTTGGCGATTTTCTGCCAGTGTTCAGGGCGTA
GGAAGCGGCGTTGTCCAAAAAGTCATTGAGCTTTGAGATGACAGCATACC
AGTACATCGCTACATTTGCTTTGCCGTGTGTTTCCCACAAACAACAAAGA
ACGCCTCGTGCTCTGACGCCCACCAAGAAATGTCACACTCCCTGAGTCAG
CAGTACGTGGTGGCCCCTGCGTAGGGTCGCATTCGTGGCCAATCGCCCTT
TGTAAAAAAGGGCGGGGACGTCGCGTGACACAGATTGAATCGTTGTGTAT
GTAGTAACTCTTAGTGCTAGCCCGGCATACAAGGCTGGGCCATTTTTTTG
GCACTATTCACGCGGCATTAGGGTTTCGGTTGTCAAACCGGCACACTCAA
TCTTTGTTGTCATTTTCGTCAACAAGATGTACATATTGTACAAGGCAATA
CAAACAAAGACTACCGTTCGAGATAATGCCTAGCGGAAGGGATGTGTTAT
TATCGAAGACCTTTCAACGACTAGGGAAAGGAACCTTCTGGAAACTGGAC
TTACTGCTGTTTTGGGTTGATAAATATCTTCATTTCACGTGCGCGTGTGT
GCGAAATGACTCTTTGGGTCGGTCGGCACCCAGGGCCCGGTGTCAAACCC
ATCGCTCGTGAAGGACGGCAGCCAGCAAGACCCAGCCTCGTCCAAACAGC
CCTGCAGCAAGTGGTGAGTCGAAAGGTCGTTACGGCCAAACACACACGCA
CGACGCGGCTTGGCTTGAAAACCAAACGCATCCTCGTGTTCTGCTCTAGC
TCGAGACGCTCTTGGGGTGCTCATCGTGGTCGTCGTCCCCGTCTTCTATT
GGAGAAGGTGTCGCGCTTGGTTTTGCTCTCGCCGTTCATGTTCTTCCTGT
TGTTCTTTATGTGGTAAACATTAAGTACAGGACCGATCTCTGCTGAGCAC
TCCATACCTTGGTTCTTGCTCTCGCTGTCGCTTCTTGTACTTGCTGCAGT
ATTGGTGTTGGTATTCTCACAGCTGCTGTTGCTGTCGCTATTAGTATGAC
GGGGTCGTAGTGTAGTGCTTTCCGGGCGCCGTTCATTCTCCTTCATTTAT
TTTTGGCTTCGTTGCAGAAGAACAGACACGAAATGTTTTTGCCGCGGGGG
GGTCCGCCTTTACTACCGGGGCCTTGGGAAAACAGGAAATGGGTCCCGTT
TACTTCTTCAGCACGGTCTGACGGTGCAACGTTCGAGCACTGGCAGAAAG
AATCGGACGAAAAGGACAGCGGGGACTACGCTTACGCGAGGTGATGACGG
CATTGTTCGTGGCGTCGCTGTCTTGTCCAGGGCGTTAGTCTCAAAGCAGA
GTGTGCTGCTGCATGGCGCACTCACCAAACTTATTCCCGAGTGCACCCGT
AGGTGATGCTGTGCTCGCTTGGAACTAGACCGTCTCTTGTTGATAGGGGA
AGAAAATGTACCTACCCGGCAACTGTGGACAGACCCGTGGGTCATTCGCG
TTGGCTGACATGTGTGTCAACTCCGTCGTGCCAGTCACTCAGTTCGTCAT
GTTTCTTTCTGCCGAGAGGTTCTGCGCGCTTAGTGACAATTCACACAAGA
TAACACGCCCGATGAAACATAACGTTCTTGGGGATACAGAATCCTCGGCG
GTCCTTAAGCTTGATCTGAGAGCGTTTATTCGTGTTTAGATTATCTTTCG
TGTTTAGTTCATGTTGATTCAATACATGCTTTGCAGGGTGGTGCCATGTT
ATGTGTGTTACGGTAGCACGGCGAGAAAGGCGCCAACTGTACTTGTTCTG
GTGTGCTTTCCCTGGTATATCATGTTGTTGGTCGCATGATGTCAGATACT
ACGCCCCATGGACCGAGAATCTAAGCTCGACAACTCTGCAGCAACCACAG
TTGTGACGGTGCTGAACATGGCGGCATTGAAACTGTCTCGTGGAGAGCAT
TCCGCAAATGCATCATTTGATTGTGGCATCCTTTTCGTCGTACATGATGC
ATCTTTGAAACCCGACCAAAGGGGGAGAGTGCTACCTAACGCGATTTACG
GTAACTTTAAACTTCCGACCAAAGAGAGAGCGGCATCTAGCGCGATCTAC
GGTCTATCGTTCTGCAATATTTGGACGTTTGATTTGGCAATTTAGGGTGG
GCCTCGCACGTTTGACCCGATGCTGTTGCGCCATATCTTGTACAAATGTT
ACGGGATAGGAGCACCCGGTTTTGCCTTTATACCCCTTGTTTCGCTGATG
TTCTGCTGTTTTGTTGTTCTTATCCAGATACAACGTCAAGGTCGACATTG
ACAACCACCTGAGATACTCCGACGAGGAGTACAAGCAACACCTCACGGTG
AGCTGGCGAAAGTGGATGTTTGACTTTGTGGAAGGCTTCGTCGGCTTGTG
TACCGAGCGCGCCGACGCTCGAGGAATGGCCATCACATTGGATGACTGCT
GGTAGATCACACGTGACAGCCAACTCCACATCAATATTGATTAATGTTGA
TCATTGTTCCTCACTATTGACGAAATGTGGGCGGACATCCGAACAACCTC
GGATGGAAGGAGTCCAGGCTTGTAAGAAATACATTTTACAACTTGATCAT
AAGGACGGGGCCTCGGTTAAAAATTCTGCACTAACACCTGTTCATGGTTG
GTGTGGGGATGTAGCCCGCCATAGAAACAAGGAATGAACCACGGCCATCG
CTCTAGGTTCTAAGGTGGTGCCGCGGTCTGTGCCCATCTGTTCTGGACAC
TGCTGTTTTCGCTGTTCGGTGTGTTTGGACGAACCACCCGGGCTCGTGGG
GAGTGTTTTTTTTTCTTGCTTTTCTTCATCTCCCTGCAGTACTTCTGGTT
TCAAACAGTAATCGCGGAATTTTTTTAGTAGTACCTTACCCTGGTCAACC
GTGAGGTGAAGTATTTTGCATGCACAGCATGCGTCGTTTTTGCCTTGCGT
GGGCGTACCTTTAGAAATACAACAGTGTAACTGGGCCGTGAGTCGAACCT
ACGTCCGACCGTCACACGGTTGAGCGTCCCCCAACTTACTCGTCGGGGCG
ACCGGCTTCAAACGTTCCGCCAACTGAGGGCTCGAATAATTCCAATAGCT
AATGGGCACCACTTTGATCTTAGCGGCTTCAATTTTTTTCGAGCAAATCG
GCGTGTTTATGGCACGACGTCGATCTTTGCGGCTGAAAAAGTGCTACCAA
CAAATCTTCGTGTTGGGGTTTCGACGCATCTCCATTTTCAGGAAGCCTCG
TGGACAAAGCTGGAAACGGACCATCTGGTGGCGATGGCCTTAAAGTACGA
CCTCCGCTGGCCAGTGATCAAGGACCGTTACAAGTGCACCCCAGACAGAC
CGGTGCAGGAGTTGCAGCAGCGGTTTTACGACGTCGCCAACAGATTACAG
GTGCCCTTTCACACTGTTGTTCGCCAGTGTGGTTGTGTCTGCTGGTGTGG
GCACTCTATGGTCGAGTTGAACTGCGGTGCCCGTGAAACCTGCGGTAGAG
CTGTCATGGCGAGGACCAGCGTCAGACTGGAAAATGCTTTTTTCCACAAC
CGTTACTTGTTGATCGTGCGTTGGTCTGTAACGTTAGCGCTTTCGCCTCG
AAACTTGTCAACGTTTATCTGAGCGTCCTGATGATGCCGGCATCAAGACG
CATACCTGAAGCGTGGAGACGAAATCTTAATGTGAACACCAGAACACCAA
CCGTCTTGCACTGCAACAGCGCCGGGCAGTGTTGTCTTTGCGTTGCTATC
TTCACCAATGCACGGTTTCGTAACGTGTATTTATCGTGTTCTGTTTGGTG
TATTGGATGCGGCAGACGGTTCGGAGAACAGCGTCAAACGGTGCGGGTGG
AGGTTCGCTGTTGACCATGCCCGGACTCACCGCCTTTAACGCCACGCACG
AGGCAGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig64:40000..44757+

>mRNA_Ecto-sp13_S_contig64.17162.1 ID=mRNA_Ecto-sp13_S_contig64.17162.1|Name=mRNA_Ecto-sp13_S_contig64.17162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig64:40000..44757+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGATGTGGCCGACATCCTCGGGCTTGGAGGTCCACCAGCGCCGTC
CGGAAGGGCATCGCCCGTGCTAGGTGGCCCATTGGGCCCCCTCCAAGAAA
ACAAGCGGGGTAAGGGTGGAGCGGCTCCGATCAAGAAGGCCGGCAAGCCC
CAGGGTGTCAGCCGGGAGGTTTACGCCTTGCTAGGATCGGAGGGGCTGCC
GCCGGAAGGCCCGGTGTCAAACCCATCGCTCGTGAAGGACGGCAGCCAGC
AAGACCCAGCCTCGTCCAAACAGCCCTGCAGCAAGTGGAAATGGGTCCCG
TTTACTTCTTCAGCACGGTCTGACGGTGCAACGTTCGAGCACTGGCAGAA
AGAATCGGACGAAAAGGACAGCGGGGACTACGCTTACGCGAGATACAACG
TCAAGGTCGACATTGACAACCACCTGAGATACTCCGACGAGGAGTACAAG
CAACACCTCACGGAAGCCTCGTGGACAAAGCTGGAAACGGACCATCTGGT
GGCGATGGCCTTAAAGTACGACCTCCGCTGGCCAGTGATCAAGGACCGTT
ACAAGTGCACCCCAGACAGACCGGTGCAGGAGTTGCAGCAGCGGTTTTAC
GACGTCGCCAACAGATTACAGACGGTTCGGAGAACAGCGTCAAACGGTGC
GGGTGGAGGTTCGCTGTTGACCATGCCCGGACTCACCGCCTTTAACGCCA
CGCACGAGGCAGAA
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