mRNA_Ecto-sp13_S_contig6399.17159.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6399.17159.1
Unique NamemRNA_Ecto-sp13_S_contig6399.17159.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6399.17159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6399contigEcto-sp13_S_contig6399:7399..8078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size680
Hectar predicted targeting categoryother localisation
Exons1
Cds size507
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463885.1580336-UTR-Ecto-sp13_S_contig6399:7398..74601681463885.1580336-UTR-Ecto-sp13_S_contig6399:7398..7460Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6399 7399..7460 +
1681463885.1822622-UTR-Ecto-sp13_S_contig6399:7967..80781681463885.1822622-UTR-Ecto-sp13_S_contig6399:7967..8078Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6399 7968..8078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463885.1720068-CDS-Ecto-sp13_S_contig6399:7460..79671681463885.1720068-CDS-Ecto-sp13_S_contig6399:7460..7967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6399 7461..7967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6399.17159.1prot_Ecto-sp13_S_contig6399.17159.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6399 7461..7967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6399.17159.1

>prot_Ecto-sp13_S_contig6399.17159.1 ID=prot_Ecto-sp13_S_contig6399.17159.1|Name=mRNA_Ecto-sp13_S_contig6399.17159.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=169bp
MDTIARLWWPASQTPPSFKLAENRCLCHSTSALPAPPPLLFLPLTSLLLP
IPSVRDLPRLLVGAGVENNFYPVDWLRHPTIATGIAFNAATDSDNKSAIS
IATAPALIHAVVFVVPAVAFRSSAVATVSASYRGRQRRRLAGSSAICLPG
RCWSLPSFCGRLGHACRA*
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mRNA from alignment at Ecto-sp13_S_contig6399:7399..8078+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6399.17159.1 ID=mRNA_Ecto-sp13_S_contig6399.17159.1|Name=mRNA_Ecto-sp13_S_contig6399.17159.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=680bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6399:7399..8078+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCACTGAGAATGATAAACCAACGATCAAAGGGGCCCAAAGCGAACAACA
CCAACAAATCACATGGACACAATTGCCAGACTGTGGTGGCCAGCTAGCCA
AACGCCTCCATCATTCAAGTTGGCAGAAAACAGGTGTTTGTGCCACTCCA
CCTCCGCCCTTCCTGCTCCTCCTCCTCTTCTCTTCTTGCCTTTAACCTCC
CTCCTCCTCCCAATCCCGTCGGTGCGTGACCTGCCAAGGTTGCTTGTTGG
TGCTGGGGTGGAGAACAATTTTTACCCTGTCGACTGGTTGAGGCATCCAA
CCATTGCGACCGGCATCGCTTTCAACGCCGCTACCGATTCCGACAACAAG
TCCGCCATCTCTATCGCCACCGCTCCAGCTTTGATTCATGCTGTCGTCTT
CGTCGTGCCGGCGGTCGCCTTCCGCTCGTCCGCTGTTGCTACCGTTTCGG
CTAGTTACAGAGGCCGGCAGCGCAGGCGTCTTGCTGGTTCGTCGGCGATC
TGCTTGCCCGGCAGATGCTGGTCTCTGCCTTCTTTCTGCGGCCGTCTTGG
CCACGCCTGCCGTGCTTGAAGCGGCGTGCTGCCGATGCTGACGGGAGTGT
TGAGCGTCAGCAGGACTGCCGGCCCCGGCGGTGGCAAAAACGCCGCCTCT
GCCGTCACCAACGACTCCTTGGCAACGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6399:7399..8078+

>mRNA_Ecto-sp13_S_contig6399.17159.1 ID=mRNA_Ecto-sp13_S_contig6399.17159.1|Name=mRNA_Ecto-sp13_S_contig6399.17159.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6399:7399..8078+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACACAATTGCCAGACTGTGGTGGCCAGCTAGCCAAACGCCTCCATC
ATTCAAGTTGGCAGAAAACAGGTGTTTGTGCCACTCCACCTCCGCCCTTC
CTGCTCCTCCTCCTCTTCTCTTCTTGCCTTTAACCTCCCTCCTCCTCCCA
ATCCCGTCGGTGCGTGACCTGCCAAGGTTGCTTGTTGGTGCTGGGGTGGA
GAACAATTTTTACCCTGTCGACTGGTTGAGGCATCCAACCATTGCGACCG
GCATCGCTTTCAACGCCGCTACCGATTCCGACAACAAGTCCGCCATCTCT
ATCGCCACCGCTCCAGCTTTGATTCATGCTGTCGTCTTCGTCGTGCCGGC
GGTCGCCTTCCGCTCGTCCGCTGTTGCTACCGTTTCGGCTAGTTACAGAG
GCCGGCAGCGCAGGCGTCTTGCTGGTTCGTCGGCGATCTGCTTGCCCGGC
AGATGCTGGTCTCTGCCTTCTTTCTGCGGCCGTCTTGGCCACGCCTGCCG
TGCTTGA
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