mRNA_Ecto-sp13_S_contig63984.17157.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig63984.17157.1
Unique Name	mRNA_Ecto-sp13_S_contig63984.17157.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig63984.17157.1 vs. uniprot
Match: A0A6H5KVP7_9PHAE (Dynamin_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVP7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.710e-24
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1

Query:    1 DSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVRT 144
            DSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVR+
Sbjct:  126 DSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVRS 173

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BLAST of mRNA_Ecto-sp13_S_contig63984.17157.1 vs. uniprot
Match: A0A8J9T558_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T558_PHATR)

HSP 1 Score: 92.0 bits (227), Expect = 6.330e-22
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 1

Query:    1 DSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVRTPMDA 156
            DSFTIIAPGP+D DQDGPALVGDPD+GFS LRQFGPTL HHT LK+R+ +D+
Sbjct:   35 DSFTIIAPGPADRDQDGPALVGDPDLGFSQLRQFGPTLMHHTALKIRSDIDS 86

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BLAST of mRNA_Ecto-sp13_S_contig63984.17157.1 vs. uniprot
Match: A0A7S2UGL1_9STRA (Hypothetical protein n=3 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGL1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.370e-20
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1

Query:    1 DSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVRT 144
            DSFT+IAPGP D DQDGPAL+GDPDMGFS LRQFGPTL HHT+LKVR+
Sbjct:   56 DSFTVIAPGPEDTDQDGPALIGDPDMGFSNLRQFGPTLIHHTQLKVRS 103

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BLAST of mRNA_Ecto-sp13_S_contig63984.17157.1 vs. uniprot
Match: A0A7S3V588_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V588_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.390e-20
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1

Query:    1 DSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVR 141
            D FT++APGP D DQDGPAL+GDPDMGFSGLRQFGPTL HHT+LKVR
Sbjct:  153 DCFTVVAPGPDDTDQDGPALIGDPDMGFSGLRQFGPTLIHHTQLKVR 199

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BLAST of mRNA_Ecto-sp13_S_contig63984.17157.1 vs. uniprot
Match: A0A7S2EBB6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EBB6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.460e-20
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 1

Query:    1 DSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVRT 144
            D FT+IAPGPSD+DQDGPALVGDPDMGF+ LRQFGPTL HHT+LKVR+
Sbjct:  180 DCFTVIAPGPSDVDQDGPALVGDPDMGFANLRQFGPTLIHHTQLKVRS 227

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BLAST of mRNA_Ecto-sp13_S_contig63984.17157.1 vs. uniprot
Match: A0A836CHQ6_9STRA (Dynamin_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.270e-20
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1

Query:    1 DSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVR 141
            DSFTIIAPGP D+DQDGPAL+GDPDMGFSGLRQFGP L HHT LKVR
Sbjct:  104 DSFTIIAPGPKDIDQDGPALIGDPDMGFSGLRQFGPALIHHTCLKVR 150

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BLAST of mRNA_Ecto-sp13_S_contig63984.17157.1 vs. uniprot
Match: K0S9T5_THAOC (Dynamin_N domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S9T5_THAOC)

HSP 1 Score: 90.5 bits (223), Expect = 6.270e-20
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 1

Query:    1 DSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVR 141
            D FT+IAPGP+D+DQDGPALVGDPD+GF GLRQFGPTL HHT+LKVR
Sbjct:  147 DCFTVIAPGPADVDQDGPALVGDPDIGFEGLRQFGPTLIHHTQLKVR 193

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BLAST of mRNA_Ecto-sp13_S_contig63984.17157.1 vs. uniprot
Match: A0A7S2VHD5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VHD5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.490e-20
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1

Query:    1 DSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVR 141
            D FT+IAPGP D+DQDGPALVGDPD+GF GLRQFGPTL HHT+LKVR
Sbjct:  151 DCFTVIAPGPKDVDQDGPALVGDPDIGFEGLRQFGPTLIHHTQLKVR 197

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BLAST of mRNA_Ecto-sp13_S_contig63984.17157.1 vs. uniprot
Match: A0A7S2UYE7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYE7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.160e-19
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 1

Query:    1 DSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVRT 144
            DSFTII+PGP D+DQDGPALVGDPDMGFSGLR FGP L HH +LKVR+
Sbjct:  126 DSFTIISPGPQDIDQDGPALVGDPDMGFSGLRHFGPALIHHIQLKVRS 173

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BLAST of mRNA_Ecto-sp13_S_contig63984.17157.1 vs. uniprot
Match: B8BQ51_THAPS (Dynamin_N domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ51_THAPS)

HSP 1 Score: 88.2 bits (217), Expect = 4.130e-19
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1

Query:    1 DSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVR 141
            D FT+IAPGP D+DQDGPALVGDPD+GF GLRQFGPTL HH +LKVR
Sbjct:  198 DCFTVIAPGPKDVDQDGPALVGDPDIGFEGLRQFGPTLIHHAQLKVR 244

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig63984.17157.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig63984.17157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KVP7_9PHAE	4.710e-24	97.92	Dynamin_N domain-containing protein n=2 Tax=Ectoca...	[more]
A0A8J9T558_PHATR	6.330e-22	78.85	Hypothetical protein (Fragment) n=2 Tax=Phaeodacty...	[more]
A0A7S2UGL1_9STRA	1.370e-20	83.33	Hypothetical protein n=3 Tax=Attheya septentrional...	[more]
A0A7S3V588_9STRA	2.390e-20	82.98	Hypothetical protein n=2 Tax=Chaetoceros debilis T...	[more]
A0A7S2EBB6_9STRA	2.460e-20	83.33	Hypothetical protein n=2 Tax=Ditylum brightwellii ...	[more]
A0A836CHQ6_9STRA	3.270e-20	87.23	Dynamin_N domain-containing protein n=1 Tax=Tribon...	[more]
K0S9T5_THAOC	6.270e-20	82.98	Dynamin_N domain-containing protein n=1 Tax=Thalas...	[more]
A0A7S2VHD5_9STRA	8.490e-20	82.98	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
A0A7S2UYE7_9STRA	2.160e-19	81.25	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
B8BQ51_THAPS	4.130e-19	80.85	Dynamin_N domain-containing protein n=1 Tax=Thalas...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig63984	contig	Ecto-sp13_S_contig63984:204..359 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	101.7
Seed ortholog evalue	1.1e-19
Seed eggNOG ortholog	2880.D7FV67
Model size	156
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
EggNOG free text desc.	endocytic recycling
EggNOG OGs	KOG1954@1,KOG1954@2759
Cds size	156
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463885.1212678-CDS-Ecto-sp13_S_contig63984:203..359	1681463885.1212678-CDS-Ecto-sp13_S_contig63984:203..359	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig63984 204..359 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig63984.17157.1	prot_Ecto-sp13_S_contig63984.17157.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig63984 204..359 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig63984:204..359-
coding sequence from alignment at Ecto-sp13_S_contig63984:204..359-

protein sequence of mRNA_Ecto-sp13_S_contig63984.17157.1

>prot_Ecto-sp13_S_contig63984.17157.1 ID=prot_Ecto-sp13_S_contig63984.17157.1|Name=mRNA_Ecto-sp13_S_contig63984.17157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
DSFTIIAPGPSDLDQDGPALVGDPDMGFSGLRQFGPTLTHHTELKVRTPM
DA

mRNA from alignment at Ecto-sp13_S_contig63984:204..359-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig63984.17157.1 ID=mRNA_Ecto-sp13_S_contig63984.17157.1|Name=mRNA_Ecto-sp13_S_contig63984.17157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63984:204..359- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGCTTCACCATTATCGCTCCGGGCCCCTCCGACCTTGATCAGGACGG
CCCTGCCTTAGTGGGCGATCCGGACATGGGGTTCTCGGGGTTGCGGCAGT
TCGGACCTACTCTCACGCATCACACCGAACTCAAGGTGAGGACACCTATG
GATGCA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63984:204..359-

>mRNA_Ecto-sp13_S_contig63984.17157.1 ID=mRNA_Ecto-sp13_S_contig63984.17157.1|Name=mRNA_Ecto-sp13_S_contig63984.17157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63984:204..359- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGCTTCACCATTATCGCTCCGGGCCCCTCCGACCTTGATCAGGACGG
CCCTGCCTTAGTGGGCGATCCGGACATGGGGTTCTCGGGGTTGCGGCAGT
TCGGACCTACTCTCACGCATCACACCGAACTCAAGGTGAGGACACCTATG
GATGCA