mRNA_Ecto-sp13_S_contig6398.17155.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6398.17155.1
Unique NamemRNA_Ecto-sp13_S_contig6398.17155.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6398.17155.1 vs. uniprot
Match: D7FMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV8_ECTSI)

HSP 1 Score: 605 bits (1561), Expect = 5.740e-195
Identity = 313/324 (96.60%), Postives = 315/324 (97.22%), Query Frame = 1 
Query:  280 VTAFTSLAAGAVLLTLFECLRGRRNRGCRSLYRQRHSLRFRKKNVRLKRIAVKPYPRGFLRWIPSTWRVSDAEFYEQVGMDGYVTLRFIKLCKRLCAFPAFFGMVFLLPIYERGINDSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEFLAFSDLRNDWLAGGDVARSTQTAYTVRVERIPRAFRSPVILQKFFSTLFPGQIHSATVCLGLTDLRALTLKRAKCLQALERAIIRQEVLSLSPQVRPSWFGPKEDAVRYYGLRLAEINQKLRPKQEAKLEAAKNIERFRRKELRNMGASLENMALYFVDQLARGGA 1251
            VTAFTSLAAGAVLLTLFECLRGRRNRGCRSLYRQRHSLRFRKKNVRLKRIAVKPYPRGFLRWI STWRVSDAEFYEQVGMDGYVTLRFIKLCKRLCAF AFFGMVFLLPIYE+GINDSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEF AFSDLRNDWLAGGDVARSTQTAYTVRVERIPRAFRSPVILQKFFSTLFPGQIHSATVCLGL DLRALTLKRAKCLQALERAIIRQEVL LSPQVRPSWFGPKEDAVRYYGLRLAEINQKLRPKQEAKLE   NIERFRRKELRNMGASLENMA+YFVDQLARG A
Sbjct:   59 VTAFTSLAAGAVLLTLFECLRGRRNRGCRSLYRQRHSLRFRKKNVRLKRIAVKPYPRGFLRWISSTWRVSDAEFYEQVGMDGYVTLRFIKLCKRLCAFAAFFGMVFLLPIYEQGINDSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEFFAFSDLRNDWLAGGDVARSTQTAYTVRVERIPRAFRSPVILQKFFSTLFPGQIHSATVCLGLKDLRALTLKRAKCLQALERAIIRQEVLKLSPQVRPSWFGPKEDAVRYYGLRLAEINQKLRPKQEAKLE---NIERFRRKELRNMGASLENMAMYFVDQLARGSA 379
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BLAST of mRNA_Ecto-sp13_S_contig6398.17155.1 vs. uniprot
Match: A0A6H5KIL5_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL5_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 2.110e-63
Identity = 120/128 (93.75%), Postives = 123/128 (96.09%), Query Frame = 1 
Query: 1012 EVLSLSPQVRPSWFGPKEDAVRYYGLRLAEINQKLRPKQEAKLEAAKNIERFRRKELRNMGASLENMALYFVDQLARGGAEDEDGNARVSWLERRGGDYAALESHPLHMLQERQQLGESRIGSWRAAP 1395
            EVL LSPQVRPSWFGPKEDAVRYYGLRLAEINQKLRPKQEAKLEAAKNIERFRRKELRNMGASLENMA+YFVDQLARGGAEDEDGNARVSWLERRG DYA LES+PL MLQERQQLGES +GSWRAAP
Sbjct:    3 EVLRLSPQVRPSWFGPKEDAVRYYGLRLAEINQKLRPKQEAKLEAAKNIERFRRKELRNMGASLENMAMYFVDQLARGGAEDEDGNARVSWLERRGVDYATLESYPLQMLQERQQLGESGVGSWRAAP 130
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BLAST of mRNA_Ecto-sp13_S_contig6398.17155.1 vs. uniprot
Match: A0A835ZH71_9STRA (Late exocytosis, associated with Golgi transport-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH71_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.760e-44
Identity = 83/158 (52.53%), Postives = 104/158 (65.82%), Query Frame = 1 
Query:  391 LRFRKKNVRLKRIAVKPYPRGFLRWIPSTWRVSDAEFYEQVGMDGYVTLRFIKLCKRLCAFPAFFGMVFLLPIYERG-INDSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEFLAFSDLRNDWLAGGDVARSTQTAYTVRVERIPRAFR 861
            LR+RKKN RL+ + V  YPRGFL W    WR+SD EF  QVG+DGY+ +RFI+LC+RLC   A  GM  L PIY  G +        L+M NL  G E+LW+ V FA++F +Y L+ LRKE L F+ LRNDWLA GD+    Q AY+V +E IP AFR
Sbjct:   32 LRYRKKNPRLRVVDVPKYPRGFLAWTLQCWRMSDQEFLAQVGLDGYMVIRFIRLCRRLCWCAALLGMCILTPIYVTGGVYAHSSVFFLTMTNLPAGSESLWATVAFAWVFMLYLLHELRKEHLKFTALRNDWLANGDLPSQRQAAYSVMIESIPEAFR 189
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BLAST of mRNA_Ecto-sp13_S_contig6398.17155.1 vs. uniprot
Match: A0A7R9UFD0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFD0_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.130e-26
Identity = 71/201 (35.32%), Postives = 110/201 (54.73%), Query Frame = 1 
Query:  463 WIPSTWRVS-DAEFYEQVGMDGYVTLRFIKLCKRLCAFPAFFGMVFLLPIYERGI-NDSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEFLAFSDLRNDWLAGGDVARSTQTAYTVRVERIPRAFRSPVILQKFFSTLFPGQIHSATVCLGLTDLRALTLKRAKCLQALERAIIRQEVLSLSPQVRPSWFGP 1059
            W+    +V  + +  + VG+D +V LRF+++  R+ +F AF+G+V L+P+Y+ G  N  +   + +MAN+ +G + LW   + AY FT+Y LY L +E+  F  LR+ +   G    + Q  YTV VE IP   R+   L K+F+ LFPGQ+HSA VCL    L A+  +R +    LE+  +        P   P  F P
Sbjct:   93 WLQPVIQVDGEQQLLDLVGLDAFVLLRFLRMQCRIFSFVAFWGVVVLIPLYDSGAKNVDDTFYQTTMANMAQGSKNLWVVTLCAYFFTLYALYLLSEEYRDFVQLRHQFFVHGSRETAPQARYTVLVEMIPPHLRTNAALYKYFNELFPGQVHSAIVCLNTRKLAAIMRRREQVASLLEKYTLLDNA---DPDGAPHMFKP 290
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BLAST of mRNA_Ecto-sp13_S_contig6398.17155.1 vs. uniprot
Match: A0A7S2K3N6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3N6_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.670e-26
Identity = 65/170 (38.24%), Postives = 99/170 (58.24%), Query Frame = 1 
Query:  493 AEFYEQVGMDGYVTLRFIKLCKRLCAFPAFFGMVFLLPIYERGINDSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEFLAFSDLRNDWLAGGDVARSTQTAYTVRVERIPRAFRSPVILQKFFSTLFPG-QIHSATVCLGLTDLRALTLKRAKCLQALERA 999
            A   E  G+D Y  LR+I++CKR+ A  A +G++ L P +  G  D  G  RLSMAN+ +    LW   VF +L T+Y +Y L +E   + +LR D+L  GD     Q  Y++ VE+IP   RS   L  +F+ L PG ++HSA+V + + +L  L L+R + ++ LE+A
Sbjct:    8 ARVREVCGLDAYFFLRYIRVCKRIMAVSALWGILILWPTFYTGDGDMSGFYRLSMANVLQSHWRLWVPTVFIWLQTLYVVYLLDEELRHYVELRMDFLGRGDKDVDPQQRYSIIVEKIPIELRSDQALFDYFNKLIPGGKVHSASVVMNIGELERLVLRRLRVVRRLEKA 177
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BLAST of mRNA_Ecto-sp13_S_contig6398.17155.1 vs. uniprot
Match: A0A8J9X4I7_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X4I7_PHATR)

HSP 1 Score: 113 bits (283), Expect = 3.810e-23
Identity = 62/185 (33.51%), Postives = 107/185 (57.84%), Query Frame = 1 
Query:  457 LRWIPSTWRVSDAEFYEQVGMDGYVTLRFIKLCKRLCAFPAFFGMVFLLPIYERGIN---DSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEFLAFSDLRNDWLAGGDVARSTQTAYTVRVERIPRAFRSPVILQKFFSTLFPGQIHSATVCLGLTDLRALTLKRAKCLQALERAI 1002
            L WI   + V  ++     G+DGY  LR+I++  R+ A   F+  + L+PIY  G +    +EG   LS AN+   G  +W   +FAYLF+ +  + +++E+  F DLR D+LA G++    Q  +++ +E IP   RS   L+++F  +FPG++HSA+V L L +L   +++  +  + LE++I
Sbjct:  126 LDWIGPVFGVPWSKVRRIAGLDGYFFLRYIRMNVRITAVSTFWFFLILVPIYATGSSKEHSAEGWYHLSAANIPRDGWRMWIPCLFAYLFSAFVCFVVKQEYRHFLDLRQDFLARGNMHVDPQHHHSLEIENIPYELRSDRALKEYFEKMFPGRVHSASVVLNLPELEDASVRCMRTCRRLEKSI 310
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BLAST of mRNA_Ecto-sp13_S_contig6398.17155.1 vs. uniprot
Match: B7FTE9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FTE9_PHATC)

HSP 1 Score: 112 bits (281), Expect = 2.540e-22
Identity = 61/185 (32.97%), Postives = 107/185 (57.84%), Query Frame = 1 
Query:  457 LRWIPSTWRVSDAEFYEQVGMDGYVTLRFIKLCKRLCAFPAFFGMVFLLPIYERGIN---DSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEFLAFSDLRNDWLAGGDVARSTQTAYTVRVERIPRAFRSPVILQKFFSTLFPGQIHSATVCLGLTDLRALTLKRAKCLQALERAI 1002
            L W+   + V  ++     G+DGY  LR+I++  R+ A   F+  + L+PIY  G +    +EG   LS AN+   G  +W   +FAYLF+ +  + +++E+  F DLR D+LA G++    Q  +++ +E IP   RS   L+++F  +FPG++HSA+V L L +L   +++  +  + LE++I
Sbjct:  126 LDWLGPVFGVPWSKVRRIAGLDGYFFLRYIRMNVRITAVSTFWFFLILVPIYATGSSKEHSAEGWYHLSAANIPRDGWRMWIPCLFAYLFSAFVCFVVKQEYRHFLDLRQDFLARGNMHVDPQHHHSLEIENIPYELRSDRALKEYFEKMFPGRVHSASVVLNLPELEDASVRCMRTCRRLEKSI 310
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BLAST of mRNA_Ecto-sp13_S_contig6398.17155.1 vs. uniprot
Match: A0A1Z5KTJ1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KTJ1_FISSO)

HSP 1 Score: 85.5 bits (210), Expect = 1.440e-13
Identity = 53/159 (33.33%), Postives = 80/159 (50.31%), Query Frame = 1 
Query:  490 DAEFYEQVGMDGYVTLRFIKLCKRLCAFPAFFGMVFLLPIYERGINDSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEFLAFSDLRNDWLAGGDVARST---QTAYTVRVERIPRAFRSPVILQKFFSTLFPGQIHSATVCLG---LTDL 948
            D E    VG+D +VTLRF+K    +  +P    +  L+P+Y+ G     G    ++ N+++G    W  ++F Y+  +Y L  L  E+  F  LR ++L  GD  +     Q   T  +E IPRA ++   L  FF  +FPGQ+  A V L    LTDL
Sbjct:  783 DQELLRCVGLDSFVTLRFLKFGFDVAFWPMVVSLFTLIPLYKTGEETCIGFFTTTVVNVEKGSWRFWFVLLFGYIQILYILRRLWIEWEVFLPLRYEFLENGDFEKEKYKEQYRKTCMIEYIPRAQKTDQTLYDFFDAIFPGQVQRAEVLLNTEYLTDL 941
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BLAST of mRNA_Ecto-sp13_S_contig6398.17155.1 vs. uniprot
Match: A0A836CNV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.300e-13
Identity = 50/132 (37.88%), Postives = 79/132 (59.85%), Query Frame = 1 
Query:  859 RSPVILQKFFSTLFPGQIHSATVCLGLTDLRALTLKRAKCLQALERA--IIRQEVLSLSPQVRPS----WFGPKEDAVRYYGLRLAEINQKLRPKQEAKLEAAKNIERFRRKELRNMGASLENMALYFVDQL 1236
            +SP +L +FF+TLFPGQ+HSA++CL L+DL  +   R   +Q L +A  +  ++ + L  ++         G  E A  +YG R+AE++ KL P+ +  +EAA  +E  +R+EL  M A+  NMA +F  QL
Sbjct:   30 KSPAVLAEFFNTLFPGQVHSASICLALSDLDKMLAARLLAVQRLSKASIVFMRKGVDLEVKIGRGPCGLCHGRTELAREFYGARVAELSHKLEPRLKQIIEAAATVEAVKREELVQMRATQANMAFFFSRQL 161
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BLAST of mRNA_Ecto-sp13_S_contig6398.17155.1 vs. uniprot
Match: A0A1Z5KJC5_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJC5_FISSO)

HSP 1 Score: 83.6 bits (205), Expect = 5.780e-13
Identity = 52/159 (32.70%), Postives = 80/159 (50.31%), Query Frame = 1 
Query:  490 DAEFYEQVGMDGYVTLRFIKLCKRLCAFPAFFGMVFLLPIYERGINDSEGASRLSMANLQEGGETLWSGVVFAYLFTIYFLYSLRKEFLAFSDLRNDWLAGGDVARST---QTAYTVRVERIPRAFRSPVILQKFFSTLFPGQIHSATVCLG---LTDL 948
            D E    VG+D +VTLRF+K    +  +P    +  L+P+Y+ G     G    ++ N+++G    W  ++F Y+  +Y L  L  E+  F  LR ++L  GD  +     Q   T  +E IPRA ++   L  FF  +FPG++  A V L    LTDL
Sbjct:  779 DQELLRCVGLDSFVTLRFLKFGFDVAFWPMVVSLFTLIPLYKTGEETCIGFFTTTVVNVEKGSWRFWFVLMFGYVQILYILRRLWIEWEVFLPLRYEFLENGDFEKEKYKEQYRKTCMIEYIPRAQKTDQSLYDFFDAIFPGEVERAEVLLNTEYLTDL 937
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6398.17155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMV8_ECTSI5.740e-19596.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIL5_9PHAE2.110e-6393.75ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835ZH71_9STRA3.760e-4452.53Late exocytosis, associated with Golgi transport-d... [more]
A0A7R9UFD0_9STRA2.130e-2635.32Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2K3N6_9STRA2.670e-2638.24Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A8J9X4I7_PHATR3.810e-2333.51Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
B7FTE9_PHATC2.540e-2232.97Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5KTJ1_FISSO1.440e-1333.33Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A836CNV2_9STRA3.300e-1337.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z5KJC5_FISSO5.780e-1332.70Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6398contigEcto-sp13_S_contig6398:850..7983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score458.0
Seed ortholog evalue4.5e-126
Seed eggNOG ortholog2880.D7FMV8
Model size1695
Hectar predicted targeting categorysignal anchor
Exons11
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
Cds size1179
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6398.17155.1prot_Ecto-sp13_S_contig6398.17155.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6398 3007..7983 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463884.914581-UTR-Ecto-sp13_S_contig6398:849..11281681463884.914581-UTR-Ecto-sp13_S_contig6398:849..1128Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6398 850..1128 +
1681463884.9270828-UTR-Ecto-sp13_S_contig6398:1922..20351681463884.9270828-UTR-Ecto-sp13_S_contig6398:1922..2035Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6398 1923..2035 +
1681463884.9509625-UTR-Ecto-sp13_S_contig6398:2363..24811681463884.9509625-UTR-Ecto-sp13_S_contig6398:2363..2481Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6398 2364..2481 +
1681463884.9619641-UTR-Ecto-sp13_S_contig6398:3000..30061681463884.9619641-UTR-Ecto-sp13_S_contig6398:3000..3006Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6398 3001..3006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463884.9717133-CDS-Ecto-sp13_S_contig6398:3006..30761681463884.9717133-CDS-Ecto-sp13_S_contig6398:3006..3076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6398 3007..3076 +
1681463884.9830303-CDS-Ecto-sp13_S_contig6398:3414..35861681463884.9830303-CDS-Ecto-sp13_S_contig6398:3414..3586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6398 3415..3586 +
1681463884.9946175-CDS-Ecto-sp13_S_contig6398:3979..41301681463884.9946175-CDS-Ecto-sp13_S_contig6398:3979..4130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6398 3980..4130 +
1681463885.0070722-CDS-Ecto-sp13_S_contig6398:4536..46411681463885.0070722-CDS-Ecto-sp13_S_contig6398:4536..4641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6398 4537..4641 +
1681463885.0194733-CDS-Ecto-sp13_S_contig6398:5446..55841681463885.0194733-CDS-Ecto-sp13_S_contig6398:5446..5584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6398 5447..5584 +
1681463885.031371-CDS-Ecto-sp13_S_contig6398:6471..65631681463885.031371-CDS-Ecto-sp13_S_contig6398:6471..6563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6398 6472..6563 +
1681463885.0425913-CDS-Ecto-sp13_S_contig6398:7042..71541681463885.0425913-CDS-Ecto-sp13_S_contig6398:7042..7154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6398 7043..7154 +
1681463885.054049-CDS-Ecto-sp13_S_contig6398:7644..79831681463885.054049-CDS-Ecto-sp13_S_contig6398:7644..7983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6398 7645..7983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6398.17155.1

>prot_Ecto-sp13_S_contig6398.17155.1 ID=prot_Ecto-sp13_S_contig6398.17155.1|Name=mRNA_Ecto-sp13_S_contig6398.17155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=393bp
MDGYVTLRFIKLCKRLCAFPAFFGMVFLLPIYERGINDSEGASRLSMANL
QEGGETLWSGVVFAYLFTIYFLYSLRKEFLAFSDLRNDWLAGGDVARSTQ
TAYTVRVERIPRAFRSPVILQKFFSTLFPGQIHSATVCLGLTDLRALTLK
RAKCLQALERAIIRQEVLSLSPQVRPSWFGPKEDAVRYYGLRLAEINQKL
RPKQEAKLEAAKNIERFRRKELRNMGASLENMALYFVDQLARGGAEDEDG
NARVSWLERRGGDYAALESHPLHMLQERQQLGESRIGSWRAAPPPGGGGR
GGEAAERTAVPPRGGKGRAQQRRRSRASGGGGAQRPGESGSVEGGSGSGS
GGGGGGGDDSCDEEQGGSGSSGGGGGGGGGVRPSAALSPVAEE
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mRNA from alignment at Ecto-sp13_S_contig6398:850..7983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6398.17155.1 ID=mRNA_Ecto-sp13_S_contig6398.17155.1|Name=mRNA_Ecto-sp13_S_contig6398.17155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7134bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6398:850..7983+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTTCGCCGTAAAACCAACAGTTAAAACCACCACATCGCCGTCACCGT
CATCTAAAAGAGAGAGCGGGATGTCGTCGACGTCGGCGGGTACCATCCCT
CCTTCCCTCTTCACGGTGGCCCCTACAAACAGCACCACCGGAGGGAACTC
CACCGTCACCACCCCGTTCCCGACGCCCGCTCCTGCGGAGCTCCCCGAGG
GCGCCGCGCCGAACGTGCAGACGGACGACTGGCGAGACGTTCAGGTGCGG
AGCGAGATTTGAGGTTTGGGGCGGGTGGGGTTGTCGGTGCTAAGCTGCGA
CGAATGGGCGCGGGTGCTCTGGGGGTGGAGTAACGTGGGAGGGGCGAGGG
GGGGGGGGGGGGTACTCATCGTTGTGCATGCCATAGTCGTTCGACCATTG
ACCTTGCATCCCTACAAAGCCGGGACGATGCACACCGGAACCAGGCTCAT
ACATCACCAAGCGCGAAGCGCCGTGAGGTATTGTTCGGCGAGTCGCATGG
AAGGTGCGCTGCGTTCTGCCAAGGGTGTTGGGCATCTTGTGCTTACTTCC
TTGCGTACGGATGACAGCTGCGAATTAACGGGGTATGAGGGGCGGGGTGC
TGTTTAGGTGTCCAGCGACGTCGGCGAGGCACGCCTTTCTCTGGTCGGAA
CAAGTACGCCAGATATACACGCATGCATTGGTTGTTTTGGGGTGTGTCCG
TGGAACCCATCAACGAAGAGGAGAGGTCAGACTTACGCCCTGATGATTCA
GCACCCGCCCCACTAAAGGCCTCCATAATTCGATTTTTTTACGGTCAATT
TTGGCGTATCGTGGGGTTTGCTTACAGTTGTGAAGGCAGGTTCTGACGAC
TTCGCGCACGCGGCTGAACCATTTGGCGGACATTTGTACGCGTTTGCGAC
TCATCTCTGCCATGTCTACCAGATGCAACTGAGCTCCTCCCGCAATGATC
ACTCGCTCCGTCTCGGGTCTCGTCTTGACAAGGTCACCAGGGTCTACAGC
AGCAGCCTGGTGCATAAGAAATCGTCCTCTCTCGTGTATGTTGAACCCCC
CACGTGTCTCCTTGCCATTTTAGGTCACAGCGTTCACCAGCCTGGCCGCC
GGGGCGGTACTGCTGACGCTGTTCGAGTGCCTAAGGGGACGGAGAAACCG
AGGGTGTAGATCCCTCTACCGACAGCGACATAGCCTGTGAGTGACCCCCC
CCCCCCCACCTGGATGCCTGTCTGTGTGCACCCTTCTTTGCGCGTACGCC
AGAAGTTGGAGCCACACAACCTTTCCCCTCTTGCTTTCTCCCGCGTGTCC
TGTTTTTGTTCCTCCGTGTCTTCTTCTTTTTTTTTTGCGTCGTTCCACTC
TGTAATACATCCGGTGCTCACCTCGGTCTAGCAGGCGCTTTCGCAGGAAG
AGTCTCGCATTTCCTCGCATCATCATCCTTGCGTCTCCGTGCCTTCGTTG
CCGTCATCCCACGTTGTAATCATCTCTGGCACAACCTCCGGCGCTACACC
GTTGTGGCTTGCAGGCGCTTTCGCAAGAAGAACGTCCGCCTCAAAAGGAT
CGCCGTAAAGCCTTACCCGAGAGGGTTTCTCCGTTGGATCCCTAGCACCT
GGAGAGTCTCAGACGCGGAATTCTACGAGCAGGTGCACTTTTTTTTTTTT
GTATGCCCATGTACTTAGGCCGTCGGTTTCTTGCTCACCTTTCAGTAGCC
GTCGCAGGGTTTTGTATGAAGGAAAAGTGTTTGATAAAGCACCCAACTGG
GGAGGTTGGGTGTAGGGGTAGGTTCAAGGAGCATGGTCTGCGGCCCCCCT
CCCTGTTCTATTTCTTCATAAATTTGTTGATCTCGTGAAGGCGGTCCGGT
CCGTACACTATCCGGGGGTCGCACGGCCGCACATGAGTGCGCAAGCACAT
CTACGCATGATATTCAGACCTTACGTCATCACGGCCGCCGAAGGGCGCCA
CGACGGGGAGGTGGCTTAGAGGCACACGAAGGAATGGGCAGGGAGCCCAA
TCAGAAAAGACTGGCTTCCTTGCCCGGAAAGATGTACGTTGCTCGTGCTG
CTGCTGCTGCCGTGTTGGCGGGATACGATTTTGTGATTGTTGTTTGTTGG
CGTTGGCTTTGCTTCCTTCCTCGCTCGTTTTCTTCCTCTCGACGGCGGCA
GGTGGGAATGGATGGTTACGTGACCCTGCGCTTCATCAAGCTGTGCAAGC
GCCTGTGCGCCTTCCCGGCCTTCTTCGGTGAGATTCTGTCGTGTGGTGAA
GCTCCGTGACGCGTGCCGCATGCATGCGGACATCGTCCACGCACAAACGC
ACGCAATGTTTATTCAAACATTAGCGTATCATCATCGCACAGGTACACAG
GCATCGGCACCGTACTTCGAAGCGAATTACGTGCGCAGACATGAAGTGGT
GCGTGGTATTGCAGCGTCCCCATCTCGCAGGGGTGCAGTTCACGACCCGC
TGAGCTTTCAAGCCGGCACTACTCTGCGTTGTCCCCCGCCCCCCTTTTTT
CAATGATACAAACGGGTACCGCGAAGATCTCTGTAACCGATCGATACGCG
CGCACACGCACGCAGGCATGGTTTTCTTGCTCCCCATCTACGAGCGGGGG
ATCAACGACAGCGAGGGAGCGTCGCGGCTGTCGATGGCGAACCTGCAGGA
GGGGGGTGAGACCCTCTGGAGCGGGGTGGTATTCGCCTACCTCTTCACCA
TTTACTTCCTCTACAGCCTCAGGAAGGAGTTTCTCGCGTGAGTCGAGTGA
ACTATTTGCTGCTGCTGCTGCTGCTGCTGTTGTGGTTGTGGTTGTGGTTG
TGGTTGTTCTTGTTCTTGTTCTTGTCGTTCTTCCTCGTCCCGTACCCACG
ATTGCGGCGCAGAGACGAACCCCCGCGGGGGCAGAACTAACTCCGGATGA
GGTCGAAGGAACCGCTGTATAGTCGGGAACGGTCCAGAAAGAGTCCAACC
ACCCGCGGTGACATGATGCATGCTTGAGTGTGGTTGCTAGCATCGACCGC
GCAAAACCTCGTGGCCAACACAACAACGTGTGCGTGGTTTTTGGCCATCG
ACCATGCTGACCAATGCACTACCCCAGTCTCAGTGCTGCAAATTCTCTTC
TAATTGCCATCTGTGCGTTTGCGCGCGCAGGTTTTCGGACCTACGCAACG
ATTGGCTGGCAGGCGGAGACGTGGCTCGAAGCACGCAGACCGCCTACACG
GTTCGGGTGGAGCGGATCCCGAGGGCCTTTCGAAGCCCCGTCATCCTCCA
GAAGTTCTTCAGCACGCTCTTCCCCGGCCAGGTTTGAATATGCTGGCGTA
GTTGTTGGTGTTGTTGGTGGTGGCGGTGGTGGTGTTTGTGTAGTGTTGTT
ACTGTTGCTGTTGCTGTTGCTGTTGTTGCTGTTGTTGTTGCTGTTGTTGC
TGTTGTTGTTGCTGTTGTTGCTGTTGCTGGTGCTGCTGTTGCTGTTGCTG
TTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGTTGCGGTT
GTCGTCGTCTTCGTCATCGTCGTCGTTATTGTTGTTGTGGTCGTTGCTGC
TGCTAGTTCTGGAGCCGTATCGTTGCCATATAGTCACCGCTGTGTCCCAC
CGTGCGCGAGGATGACTCTGATTCGTCTTCGGTTCCTGCTGCTATTTTCT
TGCGCCTCTTCTCCCCCTCCGCTCGCTGGATGGTCAGATCCATAGCGCCA
CCGTTTGCCTGGGACTGACGGACCTCAGAGCGCTGACCCTCAAGCGAGCC
AAGTGCCTGCAGGCGTTGGAGAGGGCCATCATCCGTCAAGAGGTGCGCGT
TGTGTTTGCTGTCGTCCTTGTTGCCGCCGTGGTTGTGGTCGTTGTCGTCG
CCCTTGTGGTTGTTGTTATTGTTGTTGTTGTTTTTGTTGATGTTGTTGGT
GGTGGTGGTGGTGGTGAGGTTGTGGTTATTTTTGTTGTTGTTGTGTTGCG
GTTGTTGTTGTTGTCTTTAAGTTGTTGTGGTTGTGAGTGTGGTTGTGGTC
GTTGCTGTCGTGGGAAGATGTAGACTCCCGGCAGACAGAAAACATTTGAC
TCTTGCCCTGCGTATTGTTTTTTGCACGCCGTGCTCCCGTTCCCTTGCAT
GATGTCTCTCGCCTTCACAGACCAGTAGGAGGCCTCCTCCTCTGTCTTGT
GTCCGTTTTCCCTATCGTGGCAGGACGTCTACCTCCGATGGATGTTTCGA
CCCGTTATGATCGACGAAGTCAACGACCACGACGACACCATCCGCCCCGC
CGTCACCGCGCCAAACCCATCTATTGTCCCGCGCCCACATGTCGACGTCG
CCAACCTCTCTTGGTTGTCCCTTGGTTGCGACAATCCATTCCAAAGGCCC
CCTCCCCCCCCCCGCTTTTTTTCGTCTTGATTGTTTTTTTCTGTGCTCCG
CGTTCCTTCCCTCCTTCCACACAACACGAACACCACAGTACGGCTCTGAG
CTTGTCTTCGAACTTCTCCCCCCTCGTTTTGTTCGTCGTAACTGTTTTTT
GTTTTTCTCGCTCCGCGTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCACACAAAAACAATAACAACGACACGAAATGAACAAGGTT
CTGAGCTTGTCTCCCCAAGTGAGGCCGTCCTGGTTCGGGCCTAAGGAGGA
CGCCGTTCGGTACTATGGCCTACGCCTCGCCGAGATCAACCAGAAGCTCA
GGCCTAAGCAGGAGGCCAAGCTGGAGGCCGCGAAGGTGGGTGGGATTCGC
CTCGCTCATCGGACACATCAAACAGAGAACGAGGCTCTGTCTGTCTGTCT
GTCTGTCTGTCTTTGTCTGCCTCCTGTGTGTCAAAAATTCTGGTGTAGTG
TGCGTTCGTTTGTCTTAGGAGAAATATGCAGCGTCGAGAGTGAAGAATTT
TCGGGAGGATCGCAGAATAGAAAACACCGCATGGGTTCTTGAGGAGATGG
GCAGTGGTGAAGCGACTCGGAAAACTCAAGACTTAATGGAGCCAAGTGCT
TCTCCTATGAACGTATAATTCTGGAAGTCGCTGACGGGGAAGGGAAACGT
CTTGACAGCACGCTGTTTGTGATGGAGAGGTGTGACAGAGGGGGATGACG
GGGGAGTGCTGATGAAGAACGGGGGGGGGGGGGGGGCCCCACTTAGGGCA
ACAGCCTGTGACGTTGGTTTTTCTTGAGGGGGCTCCCAGGAAGCGCAAAA
ACGCGCTGTGGNNNNNNNNNNGGGGGTGTAGTGGGGGGGGTTTTGGGGGG
GGGGGGGGGGGGGGGTGGGGGCGCACTTAGGGCCACCGCCTGTGACGTTG
GTTTTTGATCAGAGTGATCTCAGGAAGCGTCTCAGAGGCTCTTGGATGGT
GGCGCTGTCTCCGCGAACGGCGAAATTTCAAGCTGCCAACACCACGCGGG
GGAGAGGTTTTGTCTGCCATGTGGCGGGTAGGGGGATTCTAGACGGCGGA
GGATCATGTAGTACCACTAGTATAGCTGACTTTACCCTCCTGAGGTGCTT
TTGGCGTTGCAGTTGTGATTCTGTTGATTTTGATGATGGTCATGAGGCCC
ATCATCGCTTGCTGTTTTTTTCCCGCTGTGTGTGTGTGTTTTTTGTTCTC
CTCCTTTTTTTTTTGCCTGCAGAACATTGAGCGTTTCAGGCGAAAAGAGC
TCCGGAACATGGGGGCCAGCCTCGAGAACATGGCCCTGTACTTCGTCGAC
CAGCTTGCCAGAGGGTAAGAGAAAGAGAAAGCAACACGAACAGCACGGCA
GTACTAGTGGTTGGAATCACCCGCCTTGCCGTTCGCGCTTCGGTGGTCGT
GGATGGTTCTCATCTGGGGGGCCGGGTCCTGTTGGTGTTGTGACCCTATT
TGACGGGTTGCCACAAGAAGGTAAAAGCCTTGGTGGTGTAAAAGGTTGAC
AGACCACATGCGAGTGTTCGTTTTCTTGTCTTCCTTGGATCGAATTGCGC
CGACGAAACGAGGCCACATCATCCTACTCCCCCCCCACATTGCACACACC
GACCCCCCCCCACGTGTGAATATATGAGCATTACGCACGTAACCAATTTG
AAATAGTTTTGATATTTTTTGCTCACGGACTTATGGTTTCGCGCGTGCAC
CTTGCGGACCCCTTCCCCCCCTTCGTATTGCCTTATTGGCTAATGATGTG
GTGGGTTGCGGGCATGGTTGCGGCGGGGATGGACGTGTTGCAGTGGCGCT
GAAGACGAAGACGGCAACGCTCGCGTCAGCTGGCTGGAGAGGCGGGGAGG
GGACTACGCCGCCCTCGAGTCTCACCCTTTGCATATGCTACAGGAGAGAC
AGCAGGTATTTCCGTCTTGTTTGTTGTTGTTAATGTTGTTGTAGTCGTCG
CTGTTGTTGTTATGTTGTTAATCGCGTCCTTTTCCCGACAGAATGGGAAT
GCCTCGCCATCTCACGCAAGAGTAACGTCTAGTGGCGGGATGGTCTCGTT
GTAGCATCGGAGCTGGCGGTCTGCACAGCAGCTACGATCGATCGCACAGC
AGCTTGCGGGAAAAACAATGAGCCCCACTTTTTCACTCCGCCCCTGGCAA
ATGCAAGGATGATGACCAGCTTCTGGCTCGTCCGTGTGAAACGTAGCCTG
GGCCGGTGAAAACCCGGCATACTATCGCTCCTCCGTCCCGGCATTGTGAC
GCGATGCCCATGGCCTGTCGACTGCGGCGTGGGTTTACATGAGTACACCC
ACCCGACCCCGTGATGACGTGCGTCCTTTCCCCTGTGGTGACACGCGCGC
GGTCGGTTGTGTTTTGGGACGCGCTGGTGGTGGCATTCTTTGCAGCTCGG
CGAGAGCCGCATCGGAAGCTGGCGCGCGGCCCCGCCGCCGGGCGGAGGGG
GTCGGGGTGGAGAAGCCGCGGAGAGGACTGCGGTGCCCCCGCGAGGTGGC
AAGGGGCGCGCACAGCAGCGCCGACGGAGCAGAGCCAGCGGCGGTGGAGG
CGCTCAGCGGCCTGGAGAGAGTGGTTCCGTCGAAGGCGGTAGCGGTAGCG
GTAGCGGTGGTGGTGGTGGTGGAGGGGATGACTCCTGCGATGAGGAGCAG
GGGGGTAGTGGAAGTAGTGGCGGCGGCGGCGGAGGCGGCGGCGGCGTGCG
GCCTTCCGCTGCGTTATCGCCGGTGGCGGAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6398:850..7983+

>mRNA_Ecto-sp13_S_contig6398.17155.1 ID=mRNA_Ecto-sp13_S_contig6398.17155.1|Name=mRNA_Ecto-sp13_S_contig6398.17155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1179bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6398:850..7983+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGGTTACGTGACCCTGCGCTTCATCAAGCTGTGCAAGCGCCTGTG
CGCCTTCCCGGCCTTCTTCGGCATGGTTTTCTTGCTCCCCATCTACGAGC
GGGGGATCAACGACAGCGAGGGAGCGTCGCGGCTGTCGATGGCGAACCTG
CAGGAGGGGGGTGAGACCCTCTGGAGCGGGGTGGTATTCGCCTACCTCTT
CACCATTTACTTCCTCTACAGCCTCAGGAAGGAGTTTCTCGCGTTTTCGG
ACCTACGCAACGATTGGCTGGCAGGCGGAGACGTGGCTCGAAGCACGCAG
ACCGCCTACACGGTTCGGGTGGAGCGGATCCCGAGGGCCTTTCGAAGCCC
CGTCATCCTCCAGAAGTTCTTCAGCACGCTCTTCCCCGGCCAGATCCATA
GCGCCACCGTTTGCCTGGGACTGACGGACCTCAGAGCGCTGACCCTCAAG
CGAGCCAAGTGCCTGCAGGCGTTGGAGAGGGCCATCATCCGTCAAGAGGT
TCTGAGCTTGTCTCCCCAAGTGAGGCCGTCCTGGTTCGGGCCTAAGGAGG
ACGCCGTTCGGTACTATGGCCTACGCCTCGCCGAGATCAACCAGAAGCTC
AGGCCTAAGCAGGAGGCCAAGCTGGAGGCCGCGAAGAACATTGAGCGTTT
CAGGCGAAAAGAGCTCCGGAACATGGGGGCCAGCCTCGAGAACATGGCCC
TGTACTTCGTCGACCAGCTTGCCAGAGGTGGCGCTGAAGACGAAGACGGC
AACGCTCGCGTCAGCTGGCTGGAGAGGCGGGGAGGGGACTACGCCGCCCT
CGAGTCTCACCCTTTGCATATGCTACAGGAGAGACAGCAGCTCGGCGAGA
GCCGCATCGGAAGCTGGCGCGCGGCCCCGCCGCCGGGCGGAGGGGGTCGG
GGTGGAGAAGCCGCGGAGAGGACTGCGGTGCCCCCGCGAGGTGGCAAGGG
GCGCGCACAGCAGCGCCGACGGAGCAGAGCCAGCGGCGGTGGAGGCGCTC
AGCGGCCTGGAGAGAGTGGTTCCGTCGAAGGCGGTAGCGGTAGCGGTAGC
GGTGGTGGTGGTGGTGGAGGGGATGACTCCTGCGATGAGGAGCAGGGGGG
TAGTGGAAGTAGTGGCGGCGGCGGCGGAGGCGGCGGCGGCGTGCGGCCTT
CCGCTGCGTTATCGCCGGTGGCGGAGGAG
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