mRNA_Ecto-sp13_S_contig6394.17153.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6394.17153.1
Unique NamemRNA_Ecto-sp13_S_contig6394.17153.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6394.17153.1 vs. uniprot
Match: A0A6H5JKR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKR4_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 7.810e-21
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 KALDVATEGGPRYAFLVHNVSVHAWNVLRPALMAGRAGHHAKELER 138
            KALD+ATEGGPRYAFLVHNVSVHAWN+LRPAL AGRAGHHAKEL R
Sbjct:  225 KALDIATEGGPRYAFLVHNVSVHAWNILRPALTAGRAGHHAKELAR 270
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6394.17153.1 vs. uniprot
Match: D7G359_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G359_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 9.520e-20
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 KALDVATEGGPRYAFLVHNVSVHAWNVLRPALMAGRAGHHAKELER 138
            +ALDVA EGGPRYAFLVHNVSVHAWNVLRPAL AGRAGHHAKEL R
Sbjct:  144 QALDVAIEGGPRYAFLVHNVSVHAWNVLRPALTAGRAGHHAKELAR 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6394.17153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKR4_9PHAE7.810e-2191.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G359_ECTSI9.520e-2091.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6394contigEcto-sp13_S_contig6394:4442..4582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score90.5
Seed ortholog evalue2.2e-16
Seed eggNOG ortholog2880.D7G359
Preferred nameCFAP46
Model size141
KEGG koko:K18626
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons1
EggNOG free text desc.cilium movement involved in cell motility
EggNOG OGs2C6EK@1,2QS2Z@2759
Cds size141
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463884.7514513-CDS-Ecto-sp13_S_contig6394:4441..45821681463884.7514513-CDS-Ecto-sp13_S_contig6394:4441..4582Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6394 4442..4582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6394.17153.1prot_Ecto-sp13_S_contig6394.17153.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6394 4442..4582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6394.17153.1

>prot_Ecto-sp13_S_contig6394.17153.1 ID=prot_Ecto-sp13_S_contig6394.17153.1|Name=mRNA_Ecto-sp13_S_contig6394.17153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
KALDVATEGGPRYAFLVHNVSVHAWNVLRPALMAGRAGHHAKELER*
back to top

mRNA from alignment at Ecto-sp13_S_contig6394:4442..4582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6394.17153.1 ID=mRNA_Ecto-sp13_S_contig6394.17153.1|Name=mRNA_Ecto-sp13_S_contig6394.17153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6394:4442..4582+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCTCTGGATGTCGCCACAGAAGGGGGTCCGCGATACGCGTTCCTGGT
CCACAACGTCTCCGTTCACGCGTGGAACGTTCTGAGGCCCGCTCTCATGG
CCGGGCGGGCCGGCCATCACGCCAAGGAGCTCGAAAGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6394:4442..4582+

>mRNA_Ecto-sp13_S_contig6394.17153.1 ID=mRNA_Ecto-sp13_S_contig6394.17153.1|Name=mRNA_Ecto-sp13_S_contig6394.17153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6394:4442..4582+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCTCTGGATGTCGCCACAGAAGGGGGTCCGCGATACGCGTTCCTGGT
CCACAACGTCTCCGTTCACGCGTGGAACGTTCTGAGGCCCGCTCTCATGG
CCGGGCGGGCCGGCCATCACGCCAAGGAGCTCGAAAGGTGA
back to top