mRNA_Ecto-sp13_S_contig6390.17151.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6390.17151.1
Unique NamemRNA_Ecto-sp13_S_contig6390.17151.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6390.17151.1 vs. uniprot
Match: D8LNM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM9_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.040e-23
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 2 
Query:   17 CTLATMSVASAWISRRKSIKKLLIFFSHWLRVGADVGVGREDCTTSTQDKLM 172
            C L  MSV SAWISRRKSIKKLLIFFSHWLRVGAD+GVG EDCTTSTQDK +
Sbjct:   18 CALWPMSVTSAWISRRKSIKKLLIFFSHWLRVGADLGVGTEDCTTSTQDKQI 69
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BLAST of mRNA_Ecto-sp13_S_contig6390.17151.1 vs. uniprot
Match: A0A6H5K084_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K084_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 6.710e-13
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 2 
Query:   14 LCTLATMSVASAWISRRKSIKKLLIFFSHWLRVG 115
            LCTL T+SVASAWISRRKSIKKLLIFFSHWLR G
Sbjct:   59 LCTLVTVSVASAWISRRKSIKKLLIFFSHWLRTG 92
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BLAST of mRNA_Ecto-sp13_S_contig6390.17151.1 vs. uniprot
Match: D8LNM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM4_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.060e-8
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 2 
Query:   14 LCTLATMSVASAWISRRKSIKKLLIFFSHWL 106
            + TL TMSVASAW SRRKSIKKLL+FFSHWL
Sbjct:   54 ISTLITMSVASAWFSRRKSIKKLLLFFSHWL 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6390.17151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNM9_ECTSI1.040e-2384.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K084_9PHAE6.710e-1391.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNM4_ECTSI4.060e-883.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6390contigEcto-sp13_S_contig6390:6954..7531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size179
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_006530.1
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463884.524267-CDS-Ecto-sp13_S_contig6390:6953..70611681463884.524267-CDS-Ecto-sp13_S_contig6390:6953..7061Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6390 6954..7061 +
1681463884.539498-CDS-Ecto-sp13_S_contig6390:7461..75301681463884.539498-CDS-Ecto-sp13_S_contig6390:7461..7530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6390 7462..7530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6390.17151.1prot_Ecto-sp13_S_contig6390.17151.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6390 6954..7530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6390.17151.1

>prot_Ecto-sp13_S_contig6390.17151.1 ID=prot_Ecto-sp13_S_contig6390.17151.1|Name=mRNA_Ecto-sp13_S_contig6390.17151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
PHHWIVHSGHHVGSIGMDQSAQVDQEAPHILQPLAQGWSGRGSWKRRLHH
QYTRQTDVW
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mRNA from alignment at Ecto-sp13_S_contig6390:6954..7531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6390.17151.1 ID=mRNA_Ecto-sp13_S_contig6390.17151.1|Name=mRNA_Ecto-sp13_S_contig6390.17151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=578bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6390:6954..7531+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCACCATTGGATTGTGCACTCTGGCCACCATGTCGGTAGCATCGGCAT
GGATCAGTCGGCGCAAGTCGATCAAGAAGCTCCTCATATTCTTCAGCCAC
TGGCTCAGGTGTGGCGTGCTGTTGATGTGCTGCTTCTCTATTTTGCTGGC
ACGTGGTTCGTACGTACAATTATGCTGGTTGCACGCAAACATGGTCTCTA
CGTACGTATGTACAGAGAGTCAAAGCAACCGGGGCAGTGAACACAACAGT
TTCAATACGAAGAAGGAAATCACAGGGCCTCTCTTCTATTGCTCGTACGA
ATTTTTTTTGTTGCTGCTGTACTGTAGGCCTTCGCGTCGTACGGGGCGTT
TTGGAAGCCAAGCTTGATCGTATACAACAGATAGACCATCGCCACCAAAC
GTATTGTTGTCGTGAAGAGGTATTTCTTAAGGATTTGTTGCACCTGACTG
ATTCCAGCGACTGGCTGGCGGGTATGACATCGAATTATTAGCAATACGAA
TGCTGTAGGGTTGGAGCGGACGTGGGAGTTGGAAGAGAAGACTGCACCAC
CAGTACACAAGACAAACTGATGTGTGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6390:6954..7531+

>mRNA_Ecto-sp13_S_contig6390.17151.1 ID=mRNA_Ecto-sp13_S_contig6390.17151.1|Name=mRNA_Ecto-sp13_S_contig6390.17151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6390:6954..7531+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCACCATTGGATTGTGCACTCTGGCCACCATGTCGGTAGCATCGGCAT
GGATCAGTCGGCGCAAGTCGATCAAGAAGCTCCTCATATTCTTCAGCCAC
TGGCTCAGGGTTGGAGCGGACGTGGGAGTTGGAAGAGAAGACTGCACCAC
CAGTACACAAGACAAACTGATGTGTGG
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