mRNA_Ecto-sp13_S_contig63819.17144.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig63819.17144.1
Unique NamemRNA_Ecto-sp13_S_contig63819.17144.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig63819.17144.1 vs. uniprot
Match: A0A6H5KEU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 9.610e-11
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 CGRPMHALCGRGIGDEGYGQQRMCTDCQKLR 93
            CGR MHA CGRGIG+EGYGQQR C+DCQK +
Sbjct:   39 CGRSMHAFCGRGIGEEGYGQQRECSDCQKSK 69
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BLAST of mRNA_Ecto-sp13_S_contig63819.17144.1 vs. uniprot
Match: D7G3D7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D7_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 3.800e-10
Identity = 25/30 (83.33%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   13 MHALCGRGIGDEGYGQQRMCTDCQKLRTLG 102
            MHA CGRGIGDEGYGQQRMCTDCQK    G
Sbjct:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEG 30
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BLAST of mRNA_Ecto-sp13_S_contig63819.17144.1 vs. uniprot
Match: A0A6H5JT55_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT55_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.990e-10
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 CGRPMHALCGRGIGDEGYGQQRMCTDCQKLRTLG 102
            CG+PMH  CGRGIG+EG+GQQR CTDCQ+  T G
Sbjct:   39 CGQPMHGFCGRGIGEEGFGQQRECTDCQRRTTTG 72
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BLAST of mRNA_Ecto-sp13_S_contig63819.17144.1 vs. uniprot
Match: A0A6H5K408_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K408_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.180e-9
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 CGRPMHALCGRGIGDEGYGQQRMCTDCQKLR 93
            CGR MHA CGRGIG+EGYGQQR C+DCQK +
Sbjct:   39 CGRSMHAFCGRGIGEEGYGQQRECSDCQKSK 69
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BLAST of mRNA_Ecto-sp13_S_contig63819.17144.1 vs. uniprot
Match: A0A6H5KGD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.530e-9
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 CGRPMHALCGRGIGDEGYGQQRMCTDCQKLR 93
            CGR MHA CGRGIG+EGYGQQR C+DCQK +
Sbjct:   39 CGRSMHAFCGRGIGEEGYGQQRECSDCQKSK 69
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BLAST of mRNA_Ecto-sp13_S_contig63819.17144.1 vs. uniprot
Match: A0A6H5L8A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A7_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.760e-9
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 CGRPMHALCGRGIGDEGYGQQRMCTDCQKLR 93
            CGR MHA CGRGIG+EGYGQQR C+DCQK +
Sbjct:   39 CGRSMHAFCGRGIGEEGYGQQRECSDCQKSK 69
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BLAST of mRNA_Ecto-sp13_S_contig63819.17144.1 vs. uniprot
Match: A0A6H5JYC6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.910e-9
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 CGRPMHALCGRGIGDEGYGQQRMCTDCQKLR 93
            CGR MHA CGRGIG+EGYGQQR C+DCQK +
Sbjct:   39 CGRSMHAFCGRGIGEEGYGQQRECSDCQKSK 69
[Close]
BLAST of mRNA_Ecto-sp13_S_contig63819.17144.1 vs. uniprot
Match: A0A6H5JEK6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK6_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.320e-8
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    1 CGRPMHALCGRGIGDEGYGQQRMCTDCQKLRTLG 102
            CG PMHA C RGIG+EG+GQQR C DCQ+  T G
Sbjct:   39 CGWPMHAFCDRGIGEEGFGQQRECRDCQRRTTTG 72
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BLAST of mRNA_Ecto-sp13_S_contig63819.17144.1 vs. uniprot
Match: A0A6H5L464_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L464_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 3.120e-7
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:   13 MHALCGRGIGDEGYGQQRMCTDCQKLR 93
            MHA CGRGIG+EGYGQQR C+DCQK +
Sbjct:    1 MHAFCGRGIGEEGYGQQRECSDCQKSK 27
[Close]
BLAST of mRNA_Ecto-sp13_S_contig63819.17144.1 vs. uniprot
Match: A0A6H5JKW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW6_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 5.280e-7
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   13 MHALCGRGIGDEGYGQQRMCTDCQKLRTL 99
            MHA CGRGIG+EG+GQQR C+DCQK + L
Sbjct:    1 MHAFCGRGIGEEGHGQQRECSDCQKSKAL 29
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63819.17144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KEU0_9PHAE9.610e-1177.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3D7_ECTSI3.800e-1083.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT55_9PHAE3.990e-1070.59HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5K408_9PHAE1.180e-977.42Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGD7_9PHAE1.530e-977.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8A7_9PHAE1.760e-977.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYC6_9PHAE1.910e-977.42DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JEK6_9PHAE2.320e-867.65DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L464_9PHAE3.120e-777.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKW6_9PHAE5.280e-772.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63819contigEcto-sp13_S_contig63819:95..214 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size120
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size108
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463883.5908394-CDS-Ecto-sp13_S_contig63819:94..2021681463883.5908394-CDS-Ecto-sp13_S_contig63819:94..202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63819 95..202 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463883.600301-UTR-Ecto-sp13_S_contig63819:202..2141681463883.600301-UTR-Ecto-sp13_S_contig63819:202..214Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig63819 203..214 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63819.17144.1prot_Ecto-sp13_S_contig63819.17144.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig63819 95..202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig63819.17144.1

>prot_Ecto-sp13_S_contig63819.17144.1 ID=prot_Ecto-sp13_S_contig63819.17144.1|Name=mRNA_Ecto-sp13_S_contig63819.17144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
MHALCGRGIGDEGYGQQRMCTDCQKLRTLGACREC*
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mRNA from alignment at Ecto-sp13_S_contig63819:95..214-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig63819.17144.1 ID=mRNA_Ecto-sp13_S_contig63819.17144.1|Name=mRNA_Ecto-sp13_S_contig63819.17144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63819:95..214- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGGGCGGCCGATGCATGCCTTGTGCGGGCGAGGCATCGGGGATGAAGG
CTACGGGCAGCAGCGAATGTGCACGGATTGTCAGAAGCTGCGAACCCTAG
GTGCATGCCGCGAGTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63819:95..214-

>mRNA_Ecto-sp13_S_contig63819.17144.1 ID=mRNA_Ecto-sp13_S_contig63819.17144.1|Name=mRNA_Ecto-sp13_S_contig63819.17144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63819:95..214- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATGCCTTGTGCGGGCGAGGCATCGGGGATGAAGGCTACGGGCAGCA
GCGAATGTGCACGGATTGTCAGAAGCTGCGAACCCTAGGTGCATGCCGCG
AGTGTTGA
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