mRNA_Ecto-sp13_S_contig63803.17141.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig63803.17141.1
Unique NamemRNA_Ecto-sp13_S_contig63803.17141.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig63803.17141.1 vs. uniprot
Match: A0A6H5KYG4_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYG4_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.280e-29
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1
Query:    1 VKDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNR 168
            VKDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNR
Sbjct:  163 VKDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNR 218          
BLAST of mRNA_Ecto-sp13_S_contig63803.17141.1 vs. uniprot
Match: A0A7S2FU79_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU79_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.540e-22
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 1
Query:    4 KDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNR 168
            KDLNVDA FPF+DN++D+VTCVVSVDYLN+P E+F EI RVL+PGG AIMSMSNR
Sbjct:   83 KDLNVDAVFPFEDNTYDIVTCVVSVDYLNRPKEIFEEIHRVLKPGGCAIMSMSNR 137          
BLAST of mRNA_Ecto-sp13_S_contig63803.17141.1 vs. uniprot
Match: B5Y3G7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3G7_PHATC)

HSP 1 Score: 91.3 bits (225), Expect = 2.640e-21
Identity = 45/56 (80.36%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 VKDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNR 168
            VKDLN +   PFDDNSFD VTCVVSVDYLNKPLEVF EI RVLRPGG+ I+SMSNR
Sbjct:  115 VKDLNKEPTIPFDDNSFDKVTCVVSVDYLNKPLEVFQEIGRVLRPGGECILSMSNR 170          
BLAST of mRNA_Ecto-sp13_S_contig63803.17141.1 vs. uniprot
Match: A0A7S2XQM1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQM1_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.850e-21
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 VKDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNR 168
            VKDLN D  FP++DNSFD +TCVVSVDYLNKP E+FNEI RVLRPGG+ +++MSNR
Sbjct:   39 VKDLNKDPTFPYEDNSFDRITCVVSVDYLNKPQEIFNEIGRVLRPGGECMLAMSNR 94          
BLAST of mRNA_Ecto-sp13_S_contig63803.17141.1 vs. uniprot
Match: A0A7S2SKG7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SKG7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 9.780e-21
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 VKDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNR 168
            VKDLN D  FPFDD+SFD VTCVVSVDYLNKP E+FNEI RVLRPGG  ++SMSNR
Sbjct:  171 VKDLNEDPVFPFDDSSFDKVTCVVSVDYLNKPKEIFNEIGRVLRPGGTCLLSMSNR 226          
BLAST of mRNA_Ecto-sp13_S_contig63803.17141.1 vs. uniprot
Match: A0A1E7ELA4_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ELA4_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.020e-20
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 VKDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNR 168
            VKDLN D  FPF+D+SFD VTCVVSVDYLNKPL+VF EI RVLRPGG+ ++SMSNR
Sbjct:  114 VKDLNADPVFPFEDSSFDKVTCVVSVDYLNKPLQVFKEIGRVLRPGGECLISMSNR 169          
BLAST of mRNA_Ecto-sp13_S_contig63803.17141.1 vs. uniprot
Match: A0A7S0BE51_9RHOD (Hypothetical protein n=6 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BE51_9RHOD)

HSP 1 Score: 90.1 bits (222), Expect = 1.280e-20
Identity = 47/56 (83.93%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    1 VKDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNR 168
            VKDLN D   PFDD SFDVVT VVSVDYLNKPLEVF EI RVLRPGGKAIMS SNR
Sbjct:  144 VKDLNKDPVLPFDDASFDVVTNVVSVDYLNKPLEVFKEINRVLRPGGKAIMSFSNR 199          
BLAST of mRNA_Ecto-sp13_S_contig63803.17141.1 vs. uniprot
Match: A0A2K3MF18_TRIPR (Methyltransf_11 domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MF18_TRIPR)

HSP 1 Score: 84.7 bits (208), Expect = 3.680e-20
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1
Query:    1 VKDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNR 168
            V+DLNV+ K PFDDNSFDV+T VVSVDYL KPL++F E+ R+L+PGG AIMS SNR
Sbjct:    3 VQDLNVNPKLPFDDNSFDVITNVVSVDYLTKPLDIFKEMSRILKPGGLAIMSFSNR 58          
BLAST of mRNA_Ecto-sp13_S_contig63803.17141.1 vs. uniprot
Match: A0A6V1S5I5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S5I5_HETAK)

HSP 1 Score: 89.0 bits (219), Expect = 4.180e-20
Identity = 40/56 (71.43%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    1 VKDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNR 168
            V+DLNV  + P++D SFD+VTCVVSVDYLN+PL +F+E+RRVLRPGG+A+MSMSNR
Sbjct:  152 VRDLNVRPELPYEDESFDLVTCVVSVDYLNQPLAIFDEVRRVLRPGGRAVMSMSNR 207          
BLAST of mRNA_Ecto-sp13_S_contig63803.17141.1 vs. uniprot
Match: A0A8J5XUC6_DIALT (Methyltransf_11 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XUC6_DIALT)

HSP 1 Score: 87.8 bits (216), Expect = 9.490e-20
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1
Query:    4 KDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAIMSMSNR 168
            ++LNV+ K PFDD SFDVVTCVVSVDYL KPLEVF E+RRVL+PGG+ I+S SNR
Sbjct:  144 RNLNVEPKLPFDDGSFDVVTCVVSVDYLTKPLEVFKEVRRVLKPGGRFILSQSNR 198          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63803.17141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYG4_9PHAE2.280e-29100.00Methyltransf_11 domain-containing protein n=2 Tax=... [more]
A0A7S2FU79_9STRA4.540e-2278.18Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
B5Y3G7_PHATC2.640e-2180.36Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2XQM1_9STRA3.850e-2173.21Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2SKG7_9STRA9.780e-2178.57Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A1E7ELA4_9STRA1.020e-2076.79S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S0BE51_9RHOD1.280e-2083.93Hypothetical protein n=6 Tax=Rhodosorus marinus Ta... [more]
A0A2K3MF18_TRIPR3.680e-2071.43Methyltransf_11 domain-containing protein (Fragmen... [more]
A0A6V1S5I5_HETAK4.180e-2071.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J5XUC6_DIALT9.490e-2074.55Methyltransf_11 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63803contigEcto-sp13_S_contig63803:42..647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score114.4
Seed ortholog evalue1.8e-23
Seed eggNOG ortholog2880.D7FVV9
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.Methyltransferase domain
EggNOG OGs28JTZ@1,2QS7X@2759
Cds size171
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463883.4573727-CDS-Ecto-sp13_S_contig63803:41..1161681463883.4573727-CDS-Ecto-sp13_S_contig63803:41..116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63803 42..116 +
1681463883.4733348-CDS-Ecto-sp13_S_contig63803:551..6471681463883.4733348-CDS-Ecto-sp13_S_contig63803:551..647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63803 552..647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63803.17141.1prot_Ecto-sp13_S_contig63803.17141.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig63803 42..647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig63803.17141.1

>prot_Ecto-sp13_S_contig63803.17141.1 ID=prot_Ecto-sp13_S_contig63803.17141.1|Name=mRNA_Ecto-sp13_S_contig63803.17141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
VKDLNVDAKFPFDDNSFDVVTCVVSVDYLNKPLEVFNEIRRVLRPGGKAI
MSMSNR*
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mRNA from alignment at Ecto-sp13_S_contig63803:42..647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig63803.17141.1 ID=mRNA_Ecto-sp13_S_contig63803.17141.1|Name=mRNA_Ecto-sp13_S_contig63803.17141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63803:42..647+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAAGGACCTCAACGTTGATGCCAAGTTTCCTTTTGACGACAACTCCTT CGACGTCGTGACGTGCGTCGTGTCGGTGAGATGCTCGTGTCGTTGTGTCT GTCTTGTCTGTCTTGTCTGTCTTGTCTGTCTGTCTGTCTTGTCTGTCTGT CTGTCTGTCTGTCTATCTGTCTGTCCATCTATCTATCTGTCTGTCTTTCT GTCCTCTGTGGTTCTGGTGCATGGATTCGTTCGTACTATTCCGCGTTCCT GTTCGACATTTTTTTGTCTTTTCGCGTCGTGCTTTGCTCGTTCCGGTTTG TCGTTGTGGCTGGCTGTTGGTGAGGAGCAGCTAGCGGTTGGTTTCAGCAC CAAACAAGACCAAACAAGAACACTTGCTTAGTTACCACGAGCGCATCCCG CCCCATACAGTGTTGCGGGGAATAGTGGGTGCGGTACGACAAGTGTTTCG ATGTTTCTTCCCCCAAATGTGATGTTTTCCCCACTTTGTCGACGCCATTT ACACGTGAAGGTGGACTACTTGAACAAGCCGCTGGAGGTCTTCAACGAGA TCCGACGAGTGCTGAGACCAGGCGGCAAGGCCATCATGTCCATGTCCAAC AGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63803:42..647+

>mRNA_Ecto-sp13_S_contig63803.17141.1 ID=mRNA_Ecto-sp13_S_contig63803.17141.1|Name=mRNA_Ecto-sp13_S_contig63803.17141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63803:42..647+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAAGGACCTCAACGTTGATGCCAAGTTTCCTTTTGACGACAACTCCTT
CGACGTCGTGACGTGCGTCGTGTCGGTGGACTACTTGAACAAGCCGCTGG
AGGTCTTCAACGAGATCCGACGAGTGCTGAGACCAGGCGGCAAGGCCATC
ATGTCCATGTCCAACAGGTAA
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