mRNA_Ecto-sp13_S_contig638.17138.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig638.17138.1
Unique NamemRNA_Ecto-sp13_S_contig638.17138.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig638.17138.1 vs. uniprot
Match: D7G2C5_ECTSI (Ribonucloprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2C5_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 2.530e-84
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 1 
Query:    1 MAEDGVNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQILTLKDQIEQLLI 384
            MAEDGVNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQI+TLKDQIEQLLI
Sbjct:    1 MAEDGVNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQIITLKDQIEQLLI 128
[Close]
BLAST of mRNA_Ecto-sp13_S_contig638.17138.1 vs. uniprot
Match: A0A835Z1Z7_9STRA (Ribonucloprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z7_9STRA)

HSP 1 Score: 225 bits (574), Expect = 8.100e-74
Identity = 112/125 (89.60%), Postives = 119/125 (95.20%), Query Frame = 1 
Query:   10 DGVNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQILTLKDQIEQLLI 384
            D +NPKAYPL G DLTVTILDL+QQA+NYKQLKKGANEATKTLNRGISEFIVMAADA+PLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPV++ SVTTNEASQLK QI +LKDQIEQLLI
Sbjct:    3 DEINPKAYPLAGADLTVTILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADADPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISASVTTNEASQLKEQIQSLKDQIEQLLI 127
[Close]
BLAST of mRNA_Ecto-sp13_S_contig638.17138.1 vs. uniprot
Match: L1I7R9_GUITC (Ribonucloprotein n=6 Tax=Cryptophyceae TaxID=3027 RepID=L1I7R9_GUITC)

HSP 1 Score: 218 bits (554), Expect = 8.750e-71
Identity = 109/123 (88.62%), Postives = 115/123 (93.50%), Query Frame = 1 
Query:   16 VNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQILTLKDQIEQLLI 384
            VNPKA+PL  PDL+VTIL+L+QQASNYKQLKKGANEATKTLNRGISEFIVMAAD EPLEILLHLPLLCEDKNVPYVFVPSK ALGRACGVSRPV+A SVTTNE SQLK QI TLKDQIE+LLI
Sbjct:    4 VNPKAFPLAPPDLSVTILELVQQASNYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVPSKQALGRACGVSRPVIAASVTTNEGSQLKGQIQTLKDQIEKLLI 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig638.17138.1 vs. uniprot
Match: A0A7S2FW40_9STRA (Ribonucloprotein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2FW40_9STRA)

HSP 1 Score: 217 bits (553), Expect = 1.240e-70
Identity = 109/128 (85.16%), Postives = 118/128 (92.19%), Query Frame = 1 
Query:    1 MAEDGVNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQILTLKDQIEQLLI 384
            MAE  VNPKAYPL   ++TV ILDL+QQA NYKQLKKGANEATKTLNRGISEF+V+AADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPV++CSVT+NEASQLK QI T+KD IEQLLI
Sbjct:    1 MAE--VNPKAYPLADAEMTVKILDLVQQACNYKQLKKGANEATKTLNRGISEFVVLAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVISCSVTSNEASQLKDQIQTMKDNIEQLLI 126
[Close]
BLAST of mRNA_Ecto-sp13_S_contig638.17138.1 vs. uniprot
Match: A0A7S2XVU5_9STRA (Ribonucloprotein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVU5_9STRA)

HSP 1 Score: 217 bits (553), Expect = 1.510e-70
Identity = 109/126 (86.51%), Postives = 114/126 (90.48%), Query Frame = 1 
Query:    7 EDGVNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQILTLKDQIEQLLI 384
            E   NPKAYPL GP+LTV+I DL QQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSK+ALGRACGVSRPV+A S+TTNEASQLK QI   KD IEQLLI
Sbjct:    7 ELATNPKAYPLAGPELTVSIYDLTQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKIALGRACGVSRPVIAASITTNEASQLKEQIQRTKDAIEQLLI 132
[Close]
BLAST of mRNA_Ecto-sp13_S_contig638.17138.1 vs. uniprot
Match: A0A7S1CD40_9STRA (Ribonucloprotein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD40_9STRA)

HSP 1 Score: 216 bits (549), Expect = 5.960e-70
Identity = 107/126 (84.92%), Postives = 115/126 (91.27%), Query Frame = 1 
Query:    7 EDGVNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQILTLKDQIEQLLI 384
            +DGVNPKA+PL   +L V ILDLIQQASNYKQLKKGANEATKTLNRGISE IV+ ADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPV+ACS+TTNE SQLK QI T+KD IE+LLI
Sbjct:    6 KDGVNPKAFPLADAELVVKILDLIQQASNYKQLKKGANEATKTLNRGISELIVLTADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVIACSITTNEGSQLKPQINTMKDAIERLLI 131
[Close]
BLAST of mRNA_Ecto-sp13_S_contig638.17138.1 vs. uniprot
Match: A0A022QHN0_ERYGU (Ribonucloprotein n=6 Tax=Mesangiospermae TaxID=1437183 RepID=A0A022QHN0_ERYGU)

HSP 1 Score: 215 bits (548), Expect = 7.670e-70
Identity = 106/128 (82.81%), Postives = 115/128 (89.84%), Query Frame = 1 
Query:    1 MAEDGVNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQILTLKDQIEQLLI 384
            M  D VNPKAYPL    LT+TILDL+QQ +NYKQLKKGANEATKTLNRGISEF+VMAADAEPLEILLHLPLL EDKNVPYVFVPSK ALGRACGV+RPV+ACSVTTNE SQL++QIL LKD IE+LLI
Sbjct:    1 MTADAVNPKAYPLADAQLTITILDLVQQGANYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLRAQILQLKDAIEKLLI 128
[Close]
BLAST of mRNA_Ecto-sp13_S_contig638.17138.1 vs. uniprot
Match: A0A7J7GND5_CAMSI (Ribonucloprotein n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A7J7GND5_CAMSI)

HSP 1 Score: 214 bits (544), Expect = 3.120e-69
Identity = 106/128 (82.81%), Postives = 115/128 (89.84%), Query Frame = 1 
Query:    1 MAEDGVNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQILTLKDQIEQLLI 384
            M  + VNPKAYPL    LT+TILDL+QQA+NYKQLKKGANEATKTLNRGISEF+VMAAD EPLEILLHLPLL EDKNVPYVFVPSK ALGRACGV+RPV+ACSVT+NEASQLKSQI  LKD IE+LLI
Sbjct:    1 MTAEAVNPKAYPLADSQLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQQLKDAIEKLLI 128
[Close]
BLAST of mRNA_Ecto-sp13_S_contig638.17138.1 vs. uniprot
Match: A0A804K312_MUSAM (Ribonucloprotein n=2 Tax=Musa TaxID=4640 RepID=A0A804K312_MUSAM)

HSP 1 Score: 213 bits (542), Expect = 6.300e-69
Identity = 106/128 (82.81%), Postives = 115/128 (89.84%), Query Frame = 1 
Query:    1 MAEDGVNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQILTLKDQIEQLLI 384
            M+ + VNPKAYPL    LT+TILDLIQQA+NYKQLKKGANEATKTLNRGISEF+VMAAD EPLEILLHLPLL EDKNVPYVFVPSK ALGRACGV+RPV+ACSVT+NE SQLKSQI  LKD IE+LLI
Sbjct:    1 MSTEAVNPKAYPLADAQLTITILDLIQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKSQIQQLKDAIEKLLI 128
[Close]
BLAST of mRNA_Ecto-sp13_S_contig638.17138.1 vs. uniprot
Match: A0A5J4Z9E3_PORPP (Ribonucloprotein n=2 Tax=Porphyridiaceae TaxID=2799 RepID=A0A5J4Z9E3_PORPP)

HSP 1 Score: 212 bits (540), Expect = 1.150e-68
Identity = 106/123 (86.18%), Postives = 115/123 (93.50%), Query Frame = 1 
Query:   16 VNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVVACSVTTNEASQLKSQILTLKDQIEQLLI 384
            VNPKA+PL    LTV+ILDL+QQA+NYKQL+KGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSK ALGRACGVSR V+ACSVT+NE SQLKSQIL L+DQIE+LLI
Sbjct:    3 VNPKAFPLAEQQLTVSILDLVQQAANYKQLRKGANEATKTLNRGISEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKQALGRACGVSRHVIACSVTSNEGSQLKSQILNLRDQIEKLLI 125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig638.17138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2C5_ECTSI2.530e-8499.22Ribonucloprotein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A835Z1Z7_9STRA8.100e-7489.60Ribonucloprotein n=1 Tax=Tribonema minus TaxID=303... [more]
L1I7R9_GUITC8.750e-7188.62Ribonucloprotein n=6 Tax=Cryptophyceae TaxID=3027 ... [more]
A0A7S2FW40_9STRA1.240e-7085.16Ribonucloprotein n=3 Tax=Ochrophyta TaxID=2696291 ... [more]
A0A7S2XVU5_9STRA1.510e-7086.51Ribonucloprotein n=1 Tax=Fibrocapsa japonica TaxID... [more]
A0A7S1CD40_9STRA5.960e-7084.92Ribonucloprotein n=1 Tax=Bicosoecida sp. CB-2014 T... [more]
A0A022QHN0_ERYGU7.670e-7082.81Ribonucloprotein n=6 Tax=Mesangiospermae TaxID=143... [more]
A0A7J7GND5_CAMSI3.120e-6982.81Ribonucloprotein n=2 Tax=Camellia sinensis TaxID=4... [more]
A0A804K312_MUSAM6.300e-6982.81Ribonucloprotein n=2 Tax=Musa TaxID=4640 RepID=A0A... [more]
A0A5J4Z9E3_PORPP1.150e-6886.18Ribonucloprotein n=2 Tax=Porphyridiaceae TaxID=279... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig638contigEcto-sp13_S_contig638:2863..4761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score250.0
Seed ortholog evalue6.1e-64
Seed eggNOG ortholog2880.D7G2C5
Preferred nameNHP2L1
Model size458
KEGG koko:K12845,ko:K14404
KEGG Pathwayko03008,ko03015,ko03040,ko05164,map03008,map03015,map03040,map05164
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000470,GO:0000491,GO:0000492,GO:0001651,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005690,GO:0005730,GO:0005732,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006417,GO:0006725,GO:0006807,GO:0007275,GO:0007338,GO:0007399,GO:0007422,GO:0007517,GO:0008150,GO:0008152,GO:0008380,GO:0009566,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0019222,GO:0019899,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030532,GO:0030621,GO:0030622,GO:0030684,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031428,GO:0031974,GO:0031981,GO:0032040,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034250,GO:0034470,GO:0034511,GO:0034512,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0045292,GO:0045727,GO:0046483,GO:0046540,GO:0048513,GO:0048518,GO:0048522,GO:0048644,GO:0048729,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051117,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051704,GO:0060255,GO:0060415,GO:0061061,GO:0065003,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904,GO:2000112
Exons3
EggNOG free text desc.U4atac snRNA binding
EggNOG OGsCOG1358@1,KOG3387@2759
Ec32 ortholog descriptionNHPX subunit of the C/D ribonucleoprotein complex
Ec32 orthologEc-16_001660.1
Cds size387
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03009,ko03019,ko03021,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463883.1356845-CDS-Ecto-sp13_S_contig638:2862..29861681463883.1356845-CDS-Ecto-sp13_S_contig638:2862..2986Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig638 2863..2986 +
1681463883.1571572-CDS-Ecto-sp13_S_contig638:4072..42061681463883.1571572-CDS-Ecto-sp13_S_contig638:4072..4206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig638 4073..4206 +
1681463883.1697578-CDS-Ecto-sp13_S_contig638:4561..46901681463883.1697578-CDS-Ecto-sp13_S_contig638:4561..4690Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig638 4562..4690 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463883.1859138-UTR-Ecto-sp13_S_contig638:4690..47611681463883.1859138-UTR-Ecto-sp13_S_contig638:4690..4761Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig638 4691..4761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig638.17138.1prot_Ecto-sp13_S_contig638.17138.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig638 2863..4690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig638.17138.1

>prot_Ecto-sp13_S_contig638.17138.1 ID=prot_Ecto-sp13_S_contig638.17138.1|Name=mRNA_Ecto-sp13_S_contig638.17138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
MAEDGVNPKAYPLTGPDLTVTILDLIQQASNYKQLKKGANEATKTLNRGI
SEFIVMAADAEPLEILLHLPLLCEDKNVPYVFVPSKVALGRACGVSRPVV
ACSVTTNEASQLKSQILTLKDQIEQLLI*
back to top

mRNA from alignment at Ecto-sp13_S_contig638:2863..4761+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig638.17138.1 ID=mRNA_Ecto-sp13_S_contig638.17138.1|Name=mRNA_Ecto-sp13_S_contig638.17138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1899bp|location=Sequence derived from alignment at Ecto-sp13_S_contig638:2863..4761+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAAGACGGAGTGAACCCTAAGGCCTACCCTCTCACTGGACCCGA
CCTCACCGTCACCATCTTGGACCTCATCCAGCAGGCGTCCAACTACAAGC
AGCTCAAGAAGGGTGCCAACGAGGGTGAGTGACCCTGCCAGGCTTCTGTC
GTGAGGGCGTTTGCCGGCTCAGCGAGTGGTTTTGTAAGTGGCATTGGCAG
CAGCAGCAGCAGCAGTCATGACGTGCCCCTTTTGGCAACCACCGGCGTCG
CAGGATCCAGCAGTCTCGTCGTCGCAGGTTGCGCCGCCCCCAGCCCAGCG
CTTACGCCGCCGGCGACATGCAGCACACGACAAAAGCACACGCGGCCCTC
GTGTTGGACCTTGTTGCTGCCGGCCACAACCTCGGAGTAGCGGGAGACCT
GGAGACCTATGGTTCTAAACGCGTTGACGGAAAGCACCGCTGGTTGATGA
CAGCAGTGTCTCGCCTTCATGTGTCATCCTCCGCCATAGACCAAGCGGAG
ATGCAGTCGGTTGGGCGGGCGTTGGGTTTGAGTTGCCGCCGAACAGTCTG
GCACGCTACCCCTCTTGCAACCTTGGAAGAGGGCGTTCTTGGTTGCCCAC
GTGAGCGAGCGAACGTCGGTGTGGAGGACTAACCGTTGTTGGGTATTATT
TTTTTTCTGTGCCATCCACTTCACAGACAATATACGTCACCACCCAGCGC
GCCTAGTCGGCGGTCGCGCTGGCAGTAAGACCCACGCGTTCATTGAAAAA
CAAAGCGACGCGAGACGTAAAACCCGCCGCATTTCCCCGAGTAGTCATTG
TGCACTTCAATATCTAGCCCTTAAATTAGTATTATAGCACGCGCACAGAT
AACACCATATCGATGCCTCCGCATGGACCACCTGCGCGTGTCCGCAGCCA
CGATTCATATTTCGACGGTGCGAAGTCCATAGTTTTCTCCACGAGAGACG
CCACTTTCTCAGCAGCTGTCGCTGTGGTTGGAATTTCGAAATTCCTGCAA
ACCTGCAAAGATTTTGAGTCATGTATCCTGTAGAGGTCTATGTTGTACGT
GCGTAAGGGCAATCAAATTATGGACGTATTATTCTCCGAGGAAGATAAGT
CTCCGATTGTGCAAGCCATGCTGGCTGTCACTGCTGCACCTCATGAACAC
GCCCCCCCCTCCCCTCCCCACACGCGTCGCGCCCTCTGCCGTCACCTTGT
ACGCGCACAGCTACCAAGACCCTGAATCGCGGCATCTCCGAGTTCATCGT
CATGGCAGCCGACGCGGAACCGCTGGAGATCCTCCTGCACCTCCCTTTGC
TGTGCGAGGACAAGAACGTGCCGTACGTGTTCGTCCCGTCGAAGGTATGC
CCTCGCGTACACATACGTTTGCTTCGTCCTCTTCGTCGTCTCTATCGCTG
GCCTCAGAGGACGCGTGCTTTCATGCATGCATAGCACGGCGCACCCCCCT
TTCAAAACCTCGTTTCCGCGCAATAACCCAGTTGATTCTTTACACGTGCG
TCTTTGTACAGCCACGGAACGGCCTTCATACTCCCGCCTGTGCCCTTCCC
GCACCTGCAAAGCCTGCATTCCCCTCCCCGTCTTCCAGCTGCTCCTGTCA
CCTATTTTTTTTTTTCATTTGTCCCACTGTAACTGCAGCCGCTACTGCTG
CGTGACTCTTCCTCTCGAATTTTTGATATATTTTTTGGGAAACAAACAGG
TGGCTCTCGGACGGGCTTGCGGTGTCTCTCGCCCCGTGGTGGCTTGCTCC
GTCACCACCAACGAGGCTTCTCAGCTCAAGAGCCAGATCCTCACGCTCAA
GGACCAGATCGAGCAGTTGCTCATCTAGGTCATGGACCATCTGGAAAAAA
AACAGAAGAGGGTTTTAGGTGCTGGAGGGGGGGGGACGTGGGAGTCACC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig638:2863..4761+

>mRNA_Ecto-sp13_S_contig638.17138.1 ID=mRNA_Ecto-sp13_S_contig638.17138.1|Name=mRNA_Ecto-sp13_S_contig638.17138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig638:2863..4761+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAAGACGGAGTGAACCCTAAGGCCTACCCTCTCACTGGACCCGA
CCTCACCGTCACCATCTTGGACCTCATCCAGCAGGCGTCCAACTACAAGC
AGCTCAAGAAGGGTGCCAACGAGGCTACCAAGACCCTGAATCGCGGCATC
TCCGAGTTCATCGTCATGGCAGCCGACGCGGAACCGCTGGAGATCCTCCT
GCACCTCCCTTTGCTGTGCGAGGACAAGAACGTGCCGTACGTGTTCGTCC
CGTCGAAGGTGGCTCTCGGACGGGCTTGCGGTGTCTCTCGCCCCGTGGTG
GCTTGCTCCGTCACCACCAACGAGGCTTCTCAGCTCAAGAGCCAGATCCT
CACGCTCAAGGACCAGATCGAGCAGTTGCTCATCTAG
back to top