mRNA_Ecto-sp13_S_contig120.1711.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig120.1711.1
Unique NamemRNA_Ecto-sp13_S_contig120.1711.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig120.1711.1 vs. uniprot
Match: A0A6H5L074_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L074_9PHAE)

HSP 1 Score: 829 bits (2142), Expect = 7.260e-299
Identity = 428/510 (83.92%), Postives = 448/510 (87.84%), Query Frame = 1 
Query:    4 MSMYELDRYFADPTTARSVQIVAKGAREVLGEVDPFAPGERPNQIQAFRSYQQGMSTIISAYLGCDQNYRPRKSLIVAAQRMHDSGPKSERSMAVAYVLASENLESFLELMRRLDKPLRQFTGPEQGSPPDRAEIVSGPPPSVHEDPGGAVARPGYRPAKWGVATKVSSAVAEGRGSPRDNPQEPRANVWPSLGKDEGSPHPTRPSSPRMRAFLERLQSGTILSDEGSSSRRGRAPSPPPTPASLSAQATDASSVIEDYLRRCSPRLGGGGGVTFQRVSASENKPSPSEEFPSEMEGVGACSGRISMAGREQRPGRPPATARFSSRDRSASSCGNGAATPGRYSQGRWNSPGSSGDQDPDPRAQGWFAEHGNENWVSVLAEEERGPRFPPDRMDMSGTFGTDMAVASPAQLFDRSGGEFAFVSPKNGSSSSRRAPGSLALRGPDWCLHNYDTAAGGGFRRRLVDQDDDGAWSDGSEEVFPEPDPSDLADGGLPCLSRRPLGDWTAVSP*G 1533
            MSMYELDRYFADPTTARS Q +AKGAREVLGEVDPFAPGERPNQIQAFRSYQQGMSTIIS   GCDQNY  R+SLIVAA+RMHDSGPKSERSMAVAYVLASENLESFLELMRRLD+PLRQFTGPEQGSP DRA+I  G PPSVHEDP G VARP  RPAKWGVATKVSSAVAEGRGS RDNPQEPRANVWPSL +D GS +PTRPSSPRMRAF ERLQ GTI SDE S+SR G+  SP    ASLSAQATDAS VIEDYLRRCSP+L GGGGVTF+R  ASE KPS SEE PSE+EGV ACSGRIS  GREQRP R PATARFSSRD SASS GNG ATPGRYS GRW  PGSSGDQD DP AQ WFAEHGNENWV VLAEEERG RFPP+RMD+SGTFGTDMAV SPAQLFDRSGG+FAF+SP NGSSSSRRAPGS + RGPDWCLH+YDTA GGGFR RLVDQ+DDGAWSDGSEEVFPEPDPSDLADGGLPCLSRRPLGD TA +P G
Sbjct:    1 MSMYELDRYFADPTTARSAQNLAKGAREVLGEVDPFAPGERPNQIQAFRSYQQGMSTIISTCPGCDQNYGSRRSLIVAARRMHDSGPKSERSMAVAYVLASENLESFLELMRRLDEPLRQFTGPEQGSPHDRAKIAGGTPPSVHEDPAGVVARPECRPAKWGVATKVSSAVAEGRGSSRDNPQEPRANVWPSLERDGGSSYPTRPSSPRMRAFHERLQRGTIWSDECSTSRGGK--SPXXXXASLSAQATDASPVIEDYLRRCSPQLAGGGGVTFRRAIASEQKPSSSEESPSEIEGVSACSGRISPVGREQRPDRRPATARFSSRDHSASSRGNGVATPGRYSPGRWTPPGSSGDQDSDPWAQAWFAEHGNENWVRVLAEEERGTRFPPNRMDISGTFGTDMAVTSPAQLFDRSGGDFAFISPSNGSSSSRRAPGSPSPRGPDWCLHDYDTATGGGFRSRLVDQEDDGAWSDGSEEVFPEPDPSDLADGGLPCLSRRPLGDSTAAAPQG 508
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BLAST of mRNA_Ecto-sp13_S_contig120.1711.1 vs. uniprot
Match: D8LJL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJL5_ECTSI)

HSP 1 Score: 438 bits (1127), Expect = 8.490e-148
Identity = 262/511 (51.27%), Postives = 273/511 (53.42%), Query Frame = 1 
Query:    1 KMSMYELDRYFADPTTARSVQIVAKGAREVLGEVDPFAPGERPNQIQAFRSYQQGMSTIISAYLGCDQNYRPRKSLIVAAQRMHDSGPKSERSMAVAYVLASENLESFLELMRRLDKPLRQFTGPEQGSPPDRAEIVSGPPPSVHEDPGGAVARPGYRPAKWGVATKVSSAVAEGRGSPRDNPQEPRANVWPSLGKDEGSPHPTRPSSPRMRAFLERLQSGTILSDEGSSSRRGRAPSPPPTPASLSAQATDASSVIEDYLRRCSPRLGGGGGVTFQRVSASENKPSPSEEFPSEMEGVGACSGRISMAGREQRPGRPPATARFSSRDRSASSCGNGAATPGRYSQGRWNSPGSSGDQDPDPRAQGWFAEHGNENWVSVLAEEERGPRFPPDRMDMSGTFGTDMAVASPAQLFDRSGGEFAFVSPKNGSSSSRRAPGSLALRGPDWCLHNYDTAAGGGFRRRLVDQDDDGAWSDGSEEVFPEPDPSDLADGGLPCLSRRPLGDWTAVSP*G 1533
            KMS YELDRYFADPTTARS QIVAKGAREVLGEVDPFAPGERPNQ+QA                                                                                                                                                                                                          TD  SVIEDYLR CSPRLGGGGGVTFQR   SE+KPS  EEFPSE+EGVGACSGR+S A RE RP R PA ARFSS DR A + GNGAATPGRYS GRW  PG+SGD DPDP A+GWF EHGNENWVSV AEE+RGPRFPPDRMDMS TFGTDMAVASPAQLFDRSGG+ AFVSPK+ SSS RRAPGSLA RGPDWCLH  DTAAGGGFR RLVDQDDDGAWSDGSEEVFPEPDPSDLADGGLPCLSRRPLGDWTAV+P G
Sbjct:   13 KMSKYELDRYFADPTTARSAQIVAKGAREVLGEVDPFAPGERPNQMQA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TDTPSVIEDYLRPCSPRLGGGGGVTFQRAIGSESKPSSLEEFPSEVEGVGACSGRMSPAERE-RPDRRPAAARFSSGDRPAPNRGNGAATPGRYSPGRWTPPGNSGDLDPDPWARGWFTEHGNENWVSVSAEEDRGPRFPPDRMDMSSTFGTDMAVASPAQLFDRSGGDLAFVSPKHESSSGRRAPGSLAPRGPDWCLHEDDTAAGGGFRSRLVDQDDDGAWSDGSEEVFPEPDPSDLADGGLPCLSRRPLGDWTAVAPQG 320
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig120.1711.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L074_9PHAE7.260e-29983.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJL5_ECTSI8.490e-14851.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig120contigEcto-sp13_S_contig120:10391..13746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1821
Hectar predicted targeting categoryother localisation
Exons4
Cds size1527
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig120.1711.1prot_Ecto-sp13_S_contig120.1711.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig120 10394..13455 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462637.2590249-UTR-Ecto-sp13_S_contig120:10390..103931681462637.2590249-UTR-Ecto-sp13_S_contig120:10390..10393Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig120 10391..10393 +
1681462637.3108935-UTR-Ecto-sp13_S_contig120:13455..137461681462637.3108935-UTR-Ecto-sp13_S_contig120:13455..13746Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig120 13456..13746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462637.2757144-CDS-Ecto-sp13_S_contig120:10393..105311681462637.2757144-CDS-Ecto-sp13_S_contig120:10393..10531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig120 10394..10531 +
1681462637.2837467-CDS-Ecto-sp13_S_contig120:10850..110681681462637.2837467-CDS-Ecto-sp13_S_contig120:10850..11068Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig120 10851..11068 +
1681462637.2937112-CDS-Ecto-sp13_S_contig120:11733..125861681462637.2937112-CDS-Ecto-sp13_S_contig120:11733..12586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig120 11734..12586 +
1681462637.302014-CDS-Ecto-sp13_S_contig120:13137..134551681462637.302014-CDS-Ecto-sp13_S_contig120:13137..13455Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig120 13138..13455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig120.1711.1

>prot_Ecto-sp13_S_contig120.1711.1 ID=prot_Ecto-sp13_S_contig120.1711.1|Name=mRNA_Ecto-sp13_S_contig120.1711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=509bp
MSMYELDRYFADPTTARSVQIVAKGAREVLGEVDPFAPGERPNQIQAFRS
YQQGMSTIISAYLGCDQNYRPRKSLIVAAQRMHDSGPKSERSMAVAYVLA
SENLESFLELMRRLDKPLRQFTGPEQGSPPDRAEIVSGPPPSVHEDPGGA
VARPGYRPAKWGVATKVSSAVAEGRGSPRDNPQEPRANVWPSLGKDEGSP
HPTRPSSPRMRAFLERLQSGTILSDEGSSSRRGRAPSPPPTPASLSAQAT
DASSVIEDYLRRCSPRLGGGGGVTFQRVSASENKPSPSEEFPSEMEGVGA
CSGRISMAGREQRPGRPPATARFSSRDRSASSCGNGAATPGRYSQGRWNS
PGSSGDQDPDPRAQGWFAEHGNENWVSVLAEEERGPRFPPDRMDMSGTFG
TDMAVASPAQLFDRSGGEFAFVSPKNGSSSSRRAPGSLALRGPDWCLHNY
DTAAGGGFRRRLVDQDDDGAWSDGSEEVFPEPDPSDLADGGLPCLSRRPL
GDWTAVSP*
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mRNA from alignment at Ecto-sp13_S_contig120:10391..13746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig120.1711.1 ID=mRNA_Ecto-sp13_S_contig120.1711.1|Name=mRNA_Ecto-sp13_S_contig120.1711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3356bp|location=Sequence derived from alignment at Ecto-sp13_S_contig120:10391..13746+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGATGTCCATGTACGAGCTGGACCGCTACTTCGCGGACCCGACAACGGC
ACGCTCGGTCCAGATCGTGGCGAAAGGAGCAAGGGAAGTGCTAGGCGAGG
TGGACCCGTTCGCTCCGGGCGAGCGACCCAACCAGATACAGGTAGAATAG
CCCAATCGAGGTGTTTAAAATAGGCCGAACCGTCTACACATGTTTTGTCG
ACACCGCGGCGCGTTTGTAGGTTGCACGTACGCCTGGTGCCCCGTCCTCT
GCGTGTACGTTGACCGCTGTTCGTCGAGCATCATGCATAAATAACCAAGA
TTTTGTTCAGTACAACAGCTTTTCTTCTGTGTACGACAACGAGATCCTTG
AACGCCGCCGCCTCCCCAGCTGCGAATACCATGCAGCGACCAACGGGGCC
TGCCCAACACGTACTTCTCCTGTTTTGGATCGTTATTTCTACGAACACCT
TTATCAAAAGGCGTTCCGCTCGTATCAACAAGGTATGAGCACCATTATCA
GCGCCTACCTGGGGTGCGACCAGAATTATAGACCGAGAAAAAGCTTAATC
GTCGCAGCCCAGAGAATGCATGACAGCGGTCCCAAAAGTGAGCGTTCAAT
GGCCGTAGCGTACGTCCTGGCGAGCGAGAATCTCGAGAGCTTCCTGGAAC
TGATGCGTCGCTTGGACAAGCCACTGAGGTATGAACAAACCGTACGAGTG
TCGTCTCTGCCCATTTAGTCGTTTCGTCATTGTGGGCTTCCCTCCATCCC
GGACTGAGCCTTCCCAGCCAACATGGCACCCAAACCTTGTCTTTCCGGCA
ACTGATGCTCGTTGACTGAATGTGTAGATTCCACGATAGTTTGTATCCGA
TGAATGCCAGATCTGACGTTGCTGTCTCACGGCCATCATTGAGGGCCAAC
GACACAGCGGTGCAATTACGTGGTAGGCTTTCGGCATAACCACGCCATGT
CGCTCGCAAAGAAGCAGCATTACATAGTGCGATAGACGGAAAGTGGTTGC
GAGATGTTGACATATCACCCTGTTGTAGAAGCTAACCACGGCCGGGAACG
TACGCTTGTAGTCTACAGTCCTACAGGAAAGACCAGCGCGCCCTGGGATA
TGTAAGACGCGGCTTTGTCTTGTCGTGGGGACGGCGTTGTGAGTCCTGCT
TTGCAATGCATAGAACAACGGAAAATTGTGTCTCACGGCATATTAATCAA
GCCCCGCAGTGCGTAGTATGGTTTAGTGAACATACCACTTCGCATGTGAT
TGAAAACGGCGGAAACGCGTCCATCATACCCGCAAAATGGTGTCAGTCTG
TTCCAACGCGACTGCTGGGGCATCTGCTTCCCTCTCATTACAGACAATTC
ACAGGGCCGGAGCAGGGCTCACCGCCCGACAGAGCCGAAATAGTCAGCGG
GCCCCCTCCTTCTGTTCACGAGGACCCGGGCGGCGCCGTGGCACGACCTG
GGTATCGCCCTGCGAAATGGGGAGTGGCGACCAAGGTGTCGAGCGCCGTC
GCTGAGGGCAGGGGCTCTCCCAGGGACAACCCGCAAGAGCCGCGCGCGAA
CGTATGGCCATCGCTGGGAAAGGACGAAGGGTCTCCACACCCCACCCGAC
CGAGCTCCCCACGGATGCGCGCGTTTCTCGAGCGGCTGCAAAGCGGCACG
ATTTTGAGCGACGAGGGTTCTTCTTCTCGAAGGGGAAGGGCGCCGTCGCC
GCCACCGACGCCGGCATCCTTGTCCGCGCAGGCGACAGACGCGTCGTCCG
TGATTGAGGACTACTTGCGCCGCTGCAGCCCGCGGCTGGGCGGGGGCGGC
GGCGTTACCTTTCAGCGAGTAAGCGCAAGCGAGAATAAGCCGTCGCCATC
GGAGGAGTTCCCGTCCGAGATGGAGGGCGTGGGCGCCTGTTCCGGGCGCA
TTTCAATGGCCGGAAGGGAGCAGCGGCCAGGCCGCCCGCCGGCGACCGCG
CGCTTCTCCTCCCGCGACCGCTCCGCTTCAAGCTGCGGCAATGGCGCTGC
GACGCCGGGCCGTTATTCGCAGGGCCGTTGGAACTCTCCGGGGAGCTCCG
GCGACCAGGACCCAGACCCGCGGGCACAAGGCTGGTTCGCAGAGCACGGC
AACGAAAACTGGGTCAGCGTGTTGGCGGAGGAGGAGCGCGGCCCTCGTTT
TCCCCCCGATCGGATGGATATGAGCGGCACCTTCGGCACGGACATGGTGA
GATGTCGCGGAAGTTTTCGTCCTTGGTCGGCAGCGACGACAAGATAACGA
GGTGCTGCGTATCGTAGGTTGAAAAGGCGCTGTCTTCTTCGGCAGCGGGC
CGCGCCGTTTTTATGCTGCTTTCGTTCTTGCTGAGGGCTTAGGCGTGCAC
AATGTTCGTGGGTGTTCCAGGGTGGCCGTCCGTATTGACACGTTGTCGCC
GGCGACGAAAGATCCATTCCGCACGACCAGTTTCCTGCCTCCAACGGTGC
TGTCTCCACCAAAGCCCTCATATCGGGCCTGTATACAGTAGTACCCAAGG
CTCACCCTCTGCCCCTTTGCCACTTGCCGCCAATGGTTCCCTGAACAAGA
GGATTCTGGTGTCGGAGCGAGTTAACAACTTGGAAGGCATGTAGGAACGC
TGTGGACCGGTTGGCGAAGTGGAACAGAGCGTTATGAAACCCCGCTCTCC
GCCTCCTCTATCGGCGGGTTTTCTTCGTTGCCCGATGAAACGCTCGGGTC
TTACGACCTAGAGTAACCCTACCCCTTCCCACTCGCTCGCTCTCCAGGCC
GTCGCGTCTCCGGCCCAACTTTTCGACCGGTCCGGCGGCGAGTTTGCCTT
CGTCAGTCCAAAGAACGGGAGCAGCAGCAGCCGCCGCGCCCCCGGCTCGC
TCGCCCTAAGAGGACCGGACTGGTGTCTCCACAACTACGACACCGCTGCA
GGTGGCGGCTTTCGTCGCCGACTCGTCGACCAGGATGATGACGGTGCCTG
GAGCGACGGGTCGGAGGAAGTGTTTCCCGAACCAGACCCATCCGACCTTG
CGGACGGCGGCCTGCCGTGCTTGTCCCGCCGCCCCCTCGGCGACTGGACC
GCTGTTTCCCCCTAAGGATGACGTCGTCGTCATCGCGGAAGGTTACATGC
GAGAGACCGGAGTGTTTGTTCTATGTCGTGCATTCCAGGATGATGATGCT
TACGAAACGTCGTCATCGCGGAAAGTTATATCCAGAATTTAGAAATGTTT
GTTTTGTGTCGTTAGGTTCCAGATTGTGACGCTTGCGAAACGTCGTCATC
ACGGAAGACTAGAAAACCAATAACTGGATAATTTTGTGCTAGGTTTGCTT
GTGTCGTTCGCTCTCCTCTTTCATGGAAACCTCGGAATTGTCCCAAAATT
ACTGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig120:10391..13746+

>mRNA_Ecto-sp13_S_contig120.1711.1 ID=mRNA_Ecto-sp13_S_contig120.1711.1|Name=mRNA_Ecto-sp13_S_contig120.1711.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1527bp|location=Sequence derived from alignment at Ecto-sp13_S_contig120:10391..13746+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCATGTACGAGCTGGACCGCTACTTCGCGGACCCGACAACGGCACG
CTCGGTCCAGATCGTGGCGAAAGGAGCAAGGGAAGTGCTAGGCGAGGTGG
ACCCGTTCGCTCCGGGCGAGCGACCCAACCAGATACAGGCGTTCCGCTCG
TATCAACAAGGTATGAGCACCATTATCAGCGCCTACCTGGGGTGCGACCA
GAATTATAGACCGAGAAAAAGCTTAATCGTCGCAGCCCAGAGAATGCATG
ACAGCGGTCCCAAAAGTGAGCGTTCAATGGCCGTAGCGTACGTCCTGGCG
AGCGAGAATCTCGAGAGCTTCCTGGAACTGATGCGTCGCTTGGACAAGCC
ACTGAGACAATTCACAGGGCCGGAGCAGGGCTCACCGCCCGACAGAGCCG
AAATAGTCAGCGGGCCCCCTCCTTCTGTTCACGAGGACCCGGGCGGCGCC
GTGGCACGACCTGGGTATCGCCCTGCGAAATGGGGAGTGGCGACCAAGGT
GTCGAGCGCCGTCGCTGAGGGCAGGGGCTCTCCCAGGGACAACCCGCAAG
AGCCGCGCGCGAACGTATGGCCATCGCTGGGAAAGGACGAAGGGTCTCCA
CACCCCACCCGACCGAGCTCCCCACGGATGCGCGCGTTTCTCGAGCGGCT
GCAAAGCGGCACGATTTTGAGCGACGAGGGTTCTTCTTCTCGAAGGGGAA
GGGCGCCGTCGCCGCCACCGACGCCGGCATCCTTGTCCGCGCAGGCGACA
GACGCGTCGTCCGTGATTGAGGACTACTTGCGCCGCTGCAGCCCGCGGCT
GGGCGGGGGCGGCGGCGTTACCTTTCAGCGAGTAAGCGCAAGCGAGAATA
AGCCGTCGCCATCGGAGGAGTTCCCGTCCGAGATGGAGGGCGTGGGCGCC
TGTTCCGGGCGCATTTCAATGGCCGGAAGGGAGCAGCGGCCAGGCCGCCC
GCCGGCGACCGCGCGCTTCTCCTCCCGCGACCGCTCCGCTTCAAGCTGCG
GCAATGGCGCTGCGACGCCGGGCCGTTATTCGCAGGGCCGTTGGAACTCT
CCGGGGAGCTCCGGCGACCAGGACCCAGACCCGCGGGCACAAGGCTGGTT
CGCAGAGCACGGCAACGAAAACTGGGTCAGCGTGTTGGCGGAGGAGGAGC
GCGGCCCTCGTTTTCCCCCCGATCGGATGGATATGAGCGGCACCTTCGGC
ACGGACATGGCCGTCGCGTCTCCGGCCCAACTTTTCGACCGGTCCGGCGG
CGAGTTTGCCTTCGTCAGTCCAAAGAACGGGAGCAGCAGCAGCCGCCGCG
CCCCCGGCTCGCTCGCCCTAAGAGGACCGGACTGGTGTCTCCACAACTAC
GACACCGCTGCAGGTGGCGGCTTTCGTCGCCGACTCGTCGACCAGGATGA
TGACGGTGCCTGGAGCGACGGGTCGGAGGAAGTGTTTCCCGAACCAGACC
CATCCGACCTTGCGGACGGCGGCCTGCCGTGCTTGTCCCGCCGCCCCCTC
GGCGACTGGACCGCTGTTTCCCCCTAA
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