mRNA_Ecto-sp13_S_contig6348.17100.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6348.17100.1
Unique NamemRNA_Ecto-sp13_S_contig6348.17100.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6348.17100.1 vs. uniprot
Match: D7FQ49_ECTSI (HECT-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ49_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 1.160e-58
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 
Query:    1 DRTVKRFWSVVSAMSAKEKAALLRFVTSCERPPPLGFESMQPPFCVHRVGIRSDGERLPTASTCFNTLKLPTYSSEKVLREKLLTSIFSGTGFELS 288
            DRTVKRFWSVVSAMSAKEKAALLRFVTSCERPPPLGFESMQPPFCVHRVGIRSDGERLPTASTCFNTLKLPTYSSEKVLREKLLTSIFSGTGFELS
Sbjct:  347 DRTVKRFWSVVSAMSAKEKAALLRFVTSCERPPPLGFESMQPPFCVHRVGIRSDGERLPTASTCFNTLKLPTYSSEKVLREKLLTSIFSGTGFELS 442
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BLAST of mRNA_Ecto-sp13_S_contig6348.17100.1 vs. uniprot
Match: A0A835Z958_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z958_9STRA)

HSP 1 Score: 157 bits (397), Expect = 2.270e-44
Identity = 74/96 (77.08%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:    1 DRTVKRFWSVVSAMSAKEKAALLRFVTSCERPPPLGFESMQPPFCVHRVGIRSDGERLPTASTCFNTLKLPTYSSEKVLREKLLTSIFSGTGFELS 288
            D T +RFW VV+AMSA E+AALLRFVT C RPPPLGFE++QPPF +HRV IR DGERLP+ASTCFN LKLPTYSS+K +REKLL SIFSG GFELS
Sbjct:  335 DATARRFWRVVAAMSAAERAALLRFVTGCARPPPLGFEALQPPFTIHRVPIRDDGERLPSASTCFNVLKLPTYSSDKAMREKLLVSIFSGAGFELS 430
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BLAST of mRNA_Ecto-sp13_S_contig6348.17100.1 vs. uniprot
Match: B7G3X8_PHATC (HECT-type E3 ubiquitin transferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3X8_PHATC)

HSP 1 Score: 148 bits (373), Expect = 1.370e-41
Identity = 70/96 (72.92%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:    1 DRTVKRFWSVVSAMSAKEKAALLRFVTSCERPPPLGFESMQPPFCVHRVGIRSDGERLPTASTCFNTLKLPTYSSEKVLREKLLTSIFSGTGFELS 288
            DRTV RFWSV+S+MS+K++A LLRFVTSCERPPPLGF S+ PPF + RVGI  DG++LP+ASTCFN LKLPTYSSEKVL+++LL +I SG GFELS
Sbjct:  248 DRTVNRFWSVLSSMSSKQQADLLRFVTSCERPPPLGFGSLNPPFTIQRVGILRDGDKLPSASTCFNVLKLPTYSSEKVLKQRLLYAIESGAGFELS 343
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BLAST of mRNA_Ecto-sp13_S_contig6348.17100.1 vs. uniprot
Match: A0A7S1DBH0_CYCTE (HECT-type E3 ubiquitin transferase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DBH0_CYCTE)

HSP 1 Score: 147 bits (372), Expect = 2.070e-41
Identity = 69/96 (71.88%), Postives = 83/96 (86.46%), Query Frame = 1 
Query:    1 DRTVKRFWSVVSAMSAKEKAALLRFVTSCERPPPLGFESMQPPFCVHRVGIRSDGERLPTASTCFNTLKLPTYSSEKVLREKLLTSIFSGTGFELS 288
            DRTV RFWSV+ + S+ +++ALLRFVTSCERPPPLGF SM PPF + RVGI  DG++LPT+STCFNTLKLPTYSSEKVLR++LL +I SG GFEL+
Sbjct:  251 DRTVSRFWSVMESFSSDQQSALLRFVTSCERPPPLGFASMNPPFTIQRVGIMRDGDKLPTSSTCFNTLKLPTYSSEKVLRQRLLYAIESGAGFELT 346
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BLAST of mRNA_Ecto-sp13_S_contig6348.17100.1 vs. uniprot
Match: A0A448ZPY4_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPY4_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.790e-40
Identity = 64/96 (66.67%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    1 DRTVKRFWSVVSAMSAKEKAALLRFVTSCERPPPLGFESMQPPFCVHRVGIRSDGERLPTASTCFNTLKLPTYSSEKVLREKLLTSIFSGTGFELS 288
            DR V RFWS  S+++ K++A LLRFVTSCERPPPLGF ++ PPF + RVGI  DG++LP+ASTCFN LKLPTYSSEKV++E+L+ +I SG GFELS
Sbjct:   60 DRNVVRFWSAFSSLTGKQQAGLLRFVTSCERPPPLGFATLIPPFTIQRVGISRDGDKLPSASTCFNVLKLPTYSSEKVMKERLIYAIESGAGFELS 155
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BLAST of mRNA_Ecto-sp13_S_contig6348.17100.1 vs. uniprot
Match: A0A7S2KDK6_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDK6_9STRA)

HSP 1 Score: 145 bits (367), Expect = 9.290e-40
Identity = 68/96 (70.83%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 DRTVKRFWSVVSAMSAKEKAALLRFVTSCERPPPLGFESMQPPFCVHRVGIRSDGERLPTASTCFNTLKLPTYSSEKVLREKLLTSIFSGTGFELS 288
            DRTV RFW+V+  M ++ +A +LRFVTSCERPPPLGF SM PPF + RVGI  DG++LPT+STCFN LKLPTYSSEKVLRE+L+ +I SGTGFELS
Sbjct:  362 DRTVTRFWNVMRGMKSEHQAGVLRFVTSCERPPPLGFSSMNPPFTIQRVGILRDGDKLPTSSTCFNVLKLPTYSSEKVLRERLIYAIESGTGFELS 457
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BLAST of mRNA_Ecto-sp13_S_contig6348.17100.1 vs. uniprot
Match: K0S6F2_THAOC (HECT-type E3 ubiquitin transferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S6F2_THAOC)

HSP 1 Score: 148 bits (374), Expect = 1.760e-39
Identity = 71/96 (73.96%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 DRTVKRFWSVVSAMSAKEKAALLRFVTSCERPPPLGFESMQPPFCVHRVGIRSDGERLPTASTCFNTLKLPTYSSEKVLREKLLTSIFSGTGFELS 288
            DR + RFWSVV+ MS K +A LLRFVTSCERPPPLGF SM PPF V R+GI  DGE+LP+ASTCFNTLKLPTYSSEKVLRE+L+ +I SG GFEL+
Sbjct: 1270 DRNIVRFWSVVNKMSPKHQADLLRFVTSCERPPPLGFSSMNPPFTVQRIGIMRDGEKLPSASTCFNTLKLPTYSSEKVLRERLIYAIESGAGFELT 1365
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BLAST of mRNA_Ecto-sp13_S_contig6348.17100.1 vs. uniprot
Match: B8BR43_THAPS (HECT-type E3 ubiquitin transferase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR43_THAPS)

HSP 1 Score: 147 bits (370), Expect = 6.050e-39
Identity = 69/96 (71.88%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 DRTVKRFWSVVSAMSAKEKAALLRFVTSCERPPPLGFESMQPPFCVHRVGIRSDGERLPTASTCFNTLKLPTYSSEKVLREKLLTSIFSGTGFELS 288
            DR + RFWSVVS+ + K++A LLRFVTSCERPPPLGF SM PPF + RVGI  DG++LPTASTCFNTLKLPTYSSEKVL+E+L+ SI +G GFEL+
Sbjct: 1064 DRNIVRFWSVVSSFTPKQQADLLRFVTSCERPPPLGFASMNPPFTIQRVGIMRDGDKLPTASTCFNTLKLPTYSSEKVLKERLIYSIEAGAGFELT 1159
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BLAST of mRNA_Ecto-sp13_S_contig6348.17100.1 vs. uniprot
Match: A0A7S2L7A9_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L7A9_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.860e-38
Identity = 68/96 (70.83%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:    1 DRTVKRFWSVVSAMSAKEKAALLRFVTSCERPPPLGFESMQPPFCVHRVGIRSDGERLPTASTCFNTLKLPTYSSEKVLREKLLTSIFSGTGFELS 288
            DR V RFWSVVS+ + K++A LLRFVTSCERPPPLGF SM PPF + RVGI  DG++LP+ASTCFNTLKLPTYSSEKVL+E+L+ +I S +GFEL+
Sbjct:  465 DRNVTRFWSVVSSFTPKQQADLLRFVTSCERPPPLGFSSMNPPFTIQRVGIMRDGDKLPSASTCFNTLKLPTYSSEKVLKERLIYAIESKSGFELT 560
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BLAST of mRNA_Ecto-sp13_S_contig6348.17100.1 vs. uniprot
Match: A0A1Z5JJN8_FISSO (HECT-type E3 ubiquitin transferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJN8_FISSO)

HSP 1 Score: 145 bits (365), Expect = 2.870e-38
Identity = 69/96 (71.88%), Postives = 81/96 (84.38%), Query Frame = 1 
Query:    1 DRTVKRFWSVVSAMSAKEKAALLRFVTSCERPPPLGFESMQPPFCVHRVGIRSDGERLPTASTCFNTLKLPTYSSEKVLREKLLTSIFSGTGFELS 288
            DRTV RFW+VV+   +K++A LLRFVTSCERPPPLGF SM PPF + RVGI  DG++LPTASTCFN LKLPTYSSEKVLR++LL +I SG GFEL+
Sbjct: 1212 DRTVARFWNVVARFDSKQQADLLRFVTSCERPPPLGFGSMNPPFTIQRVGILRDGDKLPTASTCFNILKLPTYSSEKVLRDRLLLAIQSGAGFELA 1307
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6348.17100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ49_ECTSI1.160e-58100.00HECT-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A835Z958_9STRA2.270e-4477.08HECT-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
B7G3X8_PHATC1.370e-4172.92HECT-type E3 ubiquitin transferase n=2 Tax=Phaeoda... [more]
A0A7S1DBH0_CYCTE2.070e-4171.88HECT-type E3 ubiquitin transferase n=1 Tax=Cycloph... [more]
A0A448ZPY4_9STRA2.790e-4066.67HECT-type E3 ubiquitin transferase n=1 Tax=Pseudo-... [more]
A0A7S2KDK6_9STRA9.290e-4070.83HECT-type E3 ubiquitin transferase n=1 Tax=Leptocy... [more]
K0S6F2_THAOC1.760e-3973.96HECT-type E3 ubiquitin transferase n=1 Tax=Thalass... [more]
B8BR43_THAPS6.050e-3971.88HECT-type E3 ubiquitin transferase n=1 Tax=Thalass... [more]
A0A7S2L7A9_9STRA1.860e-3870.83HECT-type E3 ubiquitin transferase n=1 Tax=Skeleto... [more]
A0A1Z5JJN8_FISSO2.870e-3871.88HECT-type E3 ubiquitin transferase n=1 Tax=Fistuli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6348contigEcto-sp13_S_contig6348:7680..8332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score195.7
Seed ortholog evalue1e-47
Seed eggNOG ortholog2880.D7FQ49
Preferred nameUPL
Model size291
KEGG koko:K10588,ko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG4427@2759
EC2.3.2.26
Cds size291
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463879.755659-CDS-Ecto-sp13_S_contig6348:7679..77391681463879.755659-CDS-Ecto-sp13_S_contig6348:7679..7739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6348 7680..7739 -
1681463879.7719142-CDS-Ecto-sp13_S_contig6348:8101..83321681463879.7719142-CDS-Ecto-sp13_S_contig6348:8101..8332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6348 8102..8332 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6348.17100.1prot_Ecto-sp13_S_contig6348.17100.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6348 7680..8332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6348.17100.1

>prot_Ecto-sp13_S_contig6348.17100.1 ID=prot_Ecto-sp13_S_contig6348.17100.1|Name=mRNA_Ecto-sp13_S_contig6348.17100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
DRTVKRFWSVVSAMSAKEKAALLRFVTSCERPPPLGFESMQPPFCVHRVG
IRSDGERLPTASTCFNTLKLPTYSSEKVLREKLLTSIFSGTGFELS*
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mRNA from alignment at Ecto-sp13_S_contig6348:7680..8332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6348.17100.1 ID=mRNA_Ecto-sp13_S_contig6348.17100.1|Name=mRNA_Ecto-sp13_S_contig6348.17100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=653bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6348:7680..8332- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCGCACCGTGAAGCGGTTCTGGTCCGTCGTGAGCGCCATGAGCGCCAA
GGAGAAGGCGGCGCTGCTGAGGTTCGTCACCAGCTGCGAGCGGCCGCCGC
CCCTGGGGTTCGAATCGATGCAGCCGCCGTTCTGCGTGCACCGCGTGGGG
ATACGGTCGGACGGCGAGAGGCTGCCGACGGCGAGCACGTGCTTCAACAC
GCTCAAGCTGCCGACCTACTCGAGCGAGAAGGTGCGCGCAATTTTTCGTC
ACGACTCTTCGTTGTTCTGTTTGTTTTTTTCGGTGGTCAGAGTGCTGTTT
TGTGGTCGTTGGGGTGGTGTCTGTATGCCCTTTGTTGGGTTTTGCTGTTG
TTGCTATTTTTCGCGGGGGGGCGGTGTTGTGTGCTTTGGTAGTGGCACTT
ATTGCTCAAGGTTGTGGTGTGGCTGCTGTTCCTCTGCCATTCGCTGTACT
GCGGCGCTGTCCCCCGATCACGTTGTTTGTGAACCTTGGCCTTCTCGCCT
GCCCCTACCTCACGCTCCGCCTTCCTTCCTTTCGGTTGCGCCATTTCCCT
TCGGAATCGGACAACAAACGCCCGGTGCGTGGGGTTCGTTCAGGTGCTCA
GGGAAAAGCTGCTGACGTCCATTTTCTCCGGCACCGGCTTCGAATTGTCT
TAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6348:7680..8332-

>mRNA_Ecto-sp13_S_contig6348.17100.1 ID=mRNA_Ecto-sp13_S_contig6348.17100.1|Name=mRNA_Ecto-sp13_S_contig6348.17100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6348:7680..8332- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCGCACCGTGAAGCGGTTCTGGTCCGTCGTGAGCGCCATGAGCGCCAA
GGAGAAGGCGGCGCTGCTGAGGTTCGTCACCAGCTGCGAGCGGCCGCCGC
CCCTGGGGTTCGAATCGATGCAGCCGCCGTTCTGCGTGCACCGCGTGGGG
ATACGGTCGGACGGCGAGAGGCTGCCGACGGCGAGCACGTGCTTCAACAC
GCTCAAGCTGCCGACCTACTCGAGCGAGAAGGTGCTCAGGGAAAAGCTGC
TGACGTCCATTTTCTCCGGCACCGGCTTCGAATTGTCTTAG
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