mRNA_Ecto-sp13_S_contig63440.17097.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig63440.17097.1
Unique NamemRNA_Ecto-sp13_S_contig63440.17097.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig63440.17097.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.190e-53
Identity = 104/131 (79.39%), Postives = 113/131 (86.26%), Query Frame = 1
Query:    1 TPIHLSAERGFLSAVKALLAAGGDLSMRYGKDEAFSALSLASSGGHVEVMQALIRHGVDVNAHDSNGCTALHSAAMWDKVRAIDTLIEAGANINVQGGKYDEARSTPLHMASRKGSSEAALSLVKHGADVH 393
            TPIHLSA+RG LSAV+ALLAAGGD S+RYGK EAFSAL LA+ GGHVEVMQALIRHGVDV+A DSNG TALHSAA  D V AI+TL+EAGANI+ QGG+ D AR TPLHMAS KG SEAALSLVKH ADVH
Sbjct:  117 TPIHLSAKRGSLSAVQALLAAGGDSSLRYGKGEAFSALGLAARGGHVEVMQALIRHGVDVDAPDSNGLTALHSAATGDAVGAIETLMEAGANIDAQGGE-DGARYTPLHMASEKGLSEAALSLVKHRADVH 246          
BLAST of mRNA_Ecto-sp13_S_contig63440.17097.1 vs. uniprot
Match: D7G744_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G744_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 4.190e-49
Identity = 94/119 (78.99%), Postives = 99/119 (83.19%), Query Frame = 1
Query:   67 GDLSMRYGKDEAFSALSLASSGGHVEVMQALIRHGVDVNAHDSNGCTALH----------SAAMWDKVRAIDTLIEAGANINVQGGKYDEARSTPLHMASRKGSSEAALSLVKHGADVH 393
            GD S+R GKDEAFS L LA+ GGHVEVMQALIRHG DVNA DSNGCTALH          SAA+ DKV AIDTLIEAGANINVQGGKYD+ARSTPLHMAS+KGSSEAALSLVKH ADVH
Sbjct:  114 GDPSLRCGKDEAFSTLGLAARGGHVEVMQALIRHGADVNAPDSNGCTALHTXXXXXXXXXSAAIGDKVGAIDTLIEAGANINVQGGKYDDARSTPLHMASKKGSSEAALSLVKHRADVH 232          
BLAST of mRNA_Ecto-sp13_S_contig63440.17097.1 vs. uniprot
Match: D7FHH2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH2_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 1.220e-46
Identity = 92/115 (80.00%), Postives = 98/115 (85.22%), Query Frame = 1
Query:   49 ALLAAGGDLSMRYGKDEAFSALSLASSGGHVEVMQALIRHGVDVNAHDSNGCTALHSAAMWDKVRAIDTLIEAGANINVQGGKYDEARSTPLHMASRKGSSEAALSLVKHGADVH 393
            ALL AGGD S RYGKD+AFSALSLA+  GHVEVMQALIRHGVDVNA DSNGCTALHSAAM D V AI+ LIEAGA IN QGG Y + R TPLHMAS +GSS+AALSLVKHGADVH
Sbjct:  160 ALLDAGGDSSFRYGKDKAFSALSLAARRGHVEVMQALIRHGVDVNAPDSNGCTALHSAAMGDTVGAINALIEAGAKINAQGGTYGK-RYTPLHMASERGSSKAALSLVKHGADVH 273          
BLAST of mRNA_Ecto-sp13_S_contig63440.17097.1 vs. uniprot
Match: A0A6H5JT48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT48_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 5.150e-44
Identity = 86/98 (87.76%), Postives = 89/98 (90.82%), Query Frame = 1
Query:   58 AAGGDLSMRYGKDEAFSALSLA-SSGGHVEVMQALIRHGVDVNAHDSNGCTALHSAAMWDKVRAIDTLIEAGANINVQGGKYDEARSTP-LHMASRKG 345
            AAGGD S+RYGKDEA SAL LA SSGG+VEVMQALIRHGVDVNAHDSNGCTALHSAAM DKV AIDTLIEAGANINVQ GKYD+ARSTP LHMAS KG
Sbjct:  128 AAGGDPSLRYGKDEALSALGLAASSGGYVEVMQALIRHGVDVNAHDSNGCTALHSAAMGDKVGAIDTLIEAGANINVQRGKYDDARSTPPLHMASEKG 225          
BLAST of mRNA_Ecto-sp13_S_contig63440.17097.1 vs. uniprot
Match: D8LJC1_ECTSI (Ankyrin repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC1_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.020e-42
Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 1
Query:   76 SMRYGKDEAFSALSLASSGGHVEVMQALIRHGVDVNAHDSNGCTALHSAAMWDKVRAIDTLIEAGANINVQGGKYDEARSTPLHMASRKGSSEAALSLVKHGADVH 393
            S+RYGK +AFSAL LA+ GGHVEVMQALIRHGVDVNA DSNGCTALHSAA+ D V AID LIEAGA+I+ QGG+  E   TPLH+AS KGSSEAALSLVKHGADVH
Sbjct:   99 SLRYGKGKAFSALGLAARGGHVEVMQALIRHGVDVNAPDSNGCTALHSAAIGDAVGAIDVLIEAGASIDAQGGEDGEMY-TPLHVASEKGSSEAALSLVKHGADVH 203          
BLAST of mRNA_Ecto-sp13_S_contig63440.17097.1 vs. uniprot
Match: D7G751_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G751_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 2.400e-41
Identity = 82/106 (77.36%), Postives = 92/106 (86.79%), Query Frame = 1
Query:   76 SMRYGKDEAFSALSLASSGGHVEVMQALIRHGVDVNAHDSNGCTALHSAAMWDKVRAIDTLIEAGANINVQGGKYDEARSTPLHMASRKGSSEAALSLVKHGADVH 393
            S+RYGK +AFSAL LA+ GGHVEVMQALIRHGVDV+  DSNGCTALHSAA+ D V AID LIEAGA+I+ QGG+ D AR TPLH+AS +GSSEAALSLVKHGADVH
Sbjct:  168 SLRYGKGKAFSALGLAARGGHVEVMQALIRHGVDVDGPDSNGCTALHSAAIGDAVGAIDVLIEAGASIDAQGGE-DGARYTPLHVASEQGSSEAALSLVKHGADVH 272          
BLAST of mRNA_Ecto-sp13_S_contig63440.17097.1 vs. uniprot
Match: A0A6H5JN84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN84_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 3.830e-30
Identity = 71/112 (63.39%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   58 AAGGDLSMRYGKDEAFSALSLASSGGHVEVMQALIRHGVDVNAHDSNGCTALHSAAMWDKVRAIDTLIEAGANINVQGGKYDEARSTPLHMASRKGSSEAALSLVKHGADVH 393
            AAG D S+RYGKD+AFSAL LA+ GGHVEVMQALIRHGVDV+A DSN  TALHS                      QGG+ D AR TPLHMAS KG SE ALSLVKH ADVH
Sbjct:  162 AAGEDSSLRYGKDKAFSALGLAARGGHVEVMQALIRHGVDVDAPDSNSLTALHSXXXXXXXXXXXXXXXXXXXXXAQGGE-DGARYTPLHMASEKGLSETALSLVKHRADVH 272          
BLAST of mRNA_Ecto-sp13_S_contig63440.17097.1 vs. uniprot
Match: A0A6H5KSG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 9.680e-17
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   58 AAGGDLSMRYGKDEAFSALSLASSGGHVEVMQALIRHGVDVNAHDSNGCTALHSAAMWDKVRAIDTLIEAGANINVQG 291
            AAG DLS+R G D   SAL  A+  G V+V++A++RHGVDVNA DS G TALH+ A  ++  AID L+EAGA++N +G
Sbjct:   56 AAGADLSLRSG-DNNESALETAAINGDVDVVRAMVRHGVDVNARDSQGLTALHAVAESNQAGAIDALVEAGAHVNARG 132          
BLAST of mRNA_Ecto-sp13_S_contig63440.17097.1 vs. uniprot
Match: D7G181_ECTSI (Ankyrin repeat protein E4_8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G181_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 4.760e-15
Identity = 57/133 (42.86%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    1 TPIHLSAERGFLSAVKALLAAGGDLSMRYGKDEAFSALSLASSGGHVEVMQALIRHGVDVNA-HDSNGCTALHSAAMWD-KVRAIDTLIEAGANINVQGGKYDEARSTPLHMASRKGSSEAALSLVKHGADVH 393
            TP+  ++  G    V+ALLAAG D S+R G    FSAL LA++ GH  V+ ALIRHGVDVN  H  +G     S    + +  AI  L+ AGA+ +    + D    T LH AS   S EAA++L+K GAD++
Sbjct:   50 TPLDTASRDGNTEIVEALLAAGADASLRRGG--VFSALQLAAANGHALVLSALIRHGVDVNEWHRESGINYSPSHGRENIQPEAIAILVGAGASTH----ERDAGGGTSLHDASDDLSLEAAVALLKRGADIN 176          
BLAST of mRNA_Ecto-sp13_S_contig63440.17097.1 vs. uniprot
Match: A0A6H5JK08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK08_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.060e-14
Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 TPIHLSAERGFLSAVKALLAAGGDLSMRYGKDEAFSALSLASSGGHVEVMQALIRH-GVDVNAHDSNGCTALHSAAMWDKVRAIDTLIEAGANINVQGGKYDEARSTPLHMAS 336
            +P+ ++AE G    + ALL AG D  +R+G++E  SAL  A S GH+ V++AL  H GVDVNA D  G TALH AA  ++  A+  LI AGA++  Q    D  + TPLH A+
Sbjct:  289 SPLIVAAEHGARGTIDALLVAGADPDIRHGENE-LSALDSAVSHGHISVLKALAHHEGVDVNAVDPTGYTALHMAADNNQSSAVGVLIAAGADLESQ----DIHQWTPLHCAA 396          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63440.17097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN15_9PHAE1.190e-5379.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G744_ECTSI4.190e-4978.99Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FHH2_ECTSI1.220e-4680.00Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JT48_9PHAE5.150e-4487.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJC1_ECTSI1.020e-4278.30Ankyrin repeat protein (Partial) (Fragment) n=1 Ta... [more]
D7G751_ECTSI2.400e-4177.36Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6H5JN84_9PHAE3.830e-3063.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG6_9PHAE9.680e-1755.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G181_ECTSI4.760e-1542.86Ankyrin repeat protein E4_8 n=1 Tax=Ectocarpus sil... [more]
A0A6H5JK08_9PHAE1.060e-1445.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63440contigEcto-sp13_S_contig63440:5..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score177.9
Seed ortholog evalue3e-42
Seed eggNOG ortholog2880.D7G744
Model size393
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-13_000220.1
Cds size393
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463879.1620362-CDS-Ecto-sp13_S_contig63440:4..3971681463879.1620362-CDS-Ecto-sp13_S_contig63440:4..397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63440 5..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63440.17097.1prot_Ecto-sp13_S_contig63440.17097.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig63440 5..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig63440.17097.1

>prot_Ecto-sp13_S_contig63440.17097.1 ID=prot_Ecto-sp13_S_contig63440.17097.1|Name=mRNA_Ecto-sp13_S_contig63440.17097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
TPIHLSAERGFLSAVKALLAAGGDLSMRYGKDEAFSALSLASSGGHVEVM
QALIRHGVDVNAHDSNGCTALHSAAMWDKVRAIDTLIEAGANINVQGGKY
DEARSTPLHMASRKGSSEAALSLVKHGADVH
back to top

mRNA from alignment at Ecto-sp13_S_contig63440:5..397+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig63440.17097.1 ID=mRNA_Ecto-sp13_S_contig63440.17097.1|Name=mRNA_Ecto-sp13_S_contig63440.17097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63440:5..397+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCCAATTCATCTCTCGGCGGAGCGTGGATTTTTATCTGCCGTGAAAGC TCTGTTGGCGGCCGGTGGAGACCTGAGCATGCGGTACGGGAAGGACGAGG CGTTTTCGGCGTTGAGTCTGGCTTCTAGTGGTGGGCATGTTGAGGTCATG CAAGCGTTGATTCGGCACGGAGTGGACGTGAATGCCCATGACTCGAACGG CTGCACGGCCTTGCACTCGGCTGCGATGTGGGATAAGGTGAGAGCGATAG ATACACTCATCGAAGCTGGGGCGAATATCAACGTTCAGGGTGGCAAGTAT GATGAAGCACGGTCCACACCTCTGCACATGGCGAGCAGAAAGGGTTCATC CGAAGCAGCATTGTCGCTTGTGAAGCACGGAGCGGACGTGCAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63440:5..397+

>mRNA_Ecto-sp13_S_contig63440.17097.1 ID=mRNA_Ecto-sp13_S_contig63440.17097.1|Name=mRNA_Ecto-sp13_S_contig63440.17097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63440:5..397+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCCAATTCATCTCTCGGCGGAGCGTGGATTTTTATCTGCCGTGAAAGC
TCTGTTGGCGGCCGGTGGAGACCTGAGCATGCGGTACGGGAAGGACGAGG
CGTTTTCGGCGTTGAGTCTGGCTTCTAGTGGTGGGCATGTTGAGGTCATG
CAAGCGTTGATTCGGCACGGAGTGGACGTGAATGCCCATGACTCGAACGG
CTGCACGGCCTTGCACTCGGCTGCGATGTGGGATAAGGTGAGAGCGATAG
ATACACTCATCGAAGCTGGGGCGAATATCAACGTTCAGGGTGGCAAGTAT
GATGAAGCACGGTCCACACCTCTGCACATGGCGAGCAGAAAGGGTTCATC
CGAAGCAGCATTGTCGCTTGTGAAGCACGGAGCGGACGTGCAC
back to top