mRNA_Ecto-sp13_S_contig63414.17093.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig63414.17093.1
Unique NamemRNA_Ecto-sp13_S_contig63414.17093.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig63414.17093.1 vs. uniprot
Match: UPI00141D783F (hypothetical protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI00141D783F)

HSP 1 Score: 271 bits (694), Expect = 4.360e-92
Identity = 123/135 (91.11%), Postives = 127/135 (94.07%), Query Frame = 1 
Query:   19 LLLLAVFLPGAAWAQDGPPAGYFAGEYEVVGRTPGPDGTALLDWLRIQAEGDRLILKACRSGEGHLSPNPSPSETAAPLIGTLGPWSLSCHFMGDSDNYPRLSCYAVTDDAMKVPGLLNFWPVRWEPPAHAQSCQ 423
            L LL   LP AAWAQDGPPAGYFAGEYEVVGRTPGPDGTALLD LRIQAEGDRL++KACRSGEGHLSPNPSPSETAAPLIGTLG WSLSCHFMGDSDNYPRLSCYAVTDDAM+VPGLLNFWP RWEPPAHAQ+CQ
Sbjct:    7 LFLLVTLLPAAAWAQDGPPAGYFAGEYEVVGRTPGPDGTALLDLLRIQAEGDRLVIKACRSGEGHLSPNPSPSETAAPLIGTLGSWSLSCHFMGDSDNYPRLSCYAVTDDAMEVPGLLNFWPARWEPPAHAQNCQ 141
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63414.17093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00141D783F4.360e-9291.11hypothetical protein n=1 Tax=Pelagibius litoralis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63414contigEcto-sp13_S_contig63414:101..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size426
Hectar predicted targeting categorysignal peptide
Exons1
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463878.9435809-CDS-Ecto-sp13_S_contig63414:100..5261681463878.9435809-CDS-Ecto-sp13_S_contig63414:100..526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63414 101..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63414.17093.1prot_Ecto-sp13_S_contig63414.17093.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig63414 101..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig63414.17093.1

>prot_Ecto-sp13_S_contig63414.17093.1 ID=prot_Ecto-sp13_S_contig63414.17093.1|Name=mRNA_Ecto-sp13_S_contig63414.17093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
MTSLSKLLLLAVFLPGAAWAQDGPPAGYFAGEYEVVGRTPGPDGTALLDW
LRIQAEGDRLILKACRSGEGHLSPNPSPSETAAPLIGTLGPWSLSCHFMG
DSDNYPRLSCYAVTDDAMKVPGLLNFWPVRWEPPAHAQSCQ*
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mRNA from alignment at Ecto-sp13_S_contig63414:101..526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig63414.17093.1 ID=mRNA_Ecto-sp13_S_contig63414.17093.1|Name=mRNA_Ecto-sp13_S_contig63414.17093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63414:101..526- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGTCTTTCCAAGCTTCTCCTGCTTGCCGTTTTCCTGCCGGGCGC
TGCCTGGGCGCAGGACGGTCCGCCGGCTGGGTATTTCGCCGGCGAATACG
AAGTCGTCGGCCGCACGCCGGGGCCCGACGGTACAGCGCTGCTCGACTGG
CTGCGCATTCAGGCAGAGGGCGACCGGCTTATCTTGAAAGCCTGCCGTTC
CGGTGAGGGCCACTTGTCGCCCAACCCCTCCCCGAGCGAAACCGCAGCGC
CCTTGATCGGCACCCTCGGCCCCTGGTCTCTGAGCTGTCATTTCATGGGC
GACAGCGACAACTATCCCAGGCTCAGTTGCTATGCGGTGACCGATGACGC
GATGAAGGTGCCGGGGCTGCTGAACTTCTGGCCCGTCCGCTGGGAACCAC
CGGCCCACGCGCAAAGTTGCCAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63414:101..526-

>mRNA_Ecto-sp13_S_contig63414.17093.1 ID=mRNA_Ecto-sp13_S_contig63414.17093.1|Name=mRNA_Ecto-sp13_S_contig63414.17093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63414:101..526- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGTCTTTCCAAGCTTCTCCTGCTTGCCGTTTTCCTGCCGGGCGC
TGCCTGGGCGCAGGACGGTCCGCCGGCTGGGTATTTCGCCGGCGAATACG
AAGTCGTCGGCCGCACGCCGGGGCCCGACGGTACAGCGCTGCTCGACTGG
CTGCGCATTCAGGCAGAGGGCGACCGGCTTATCTTGAAAGCCTGCCGTTC
CGGTGAGGGCCACTTGTCGCCCAACCCCTCCCCGAGCGAAACCGCAGCGC
CCTTGATCGGCACCCTCGGCCCCTGGTCTCTGAGCTGTCATTTCATGGGC
GACAGCGACAACTATCCCAGGCTCAGTTGCTATGCGGTGACCGATGACGC
GATGAAGGTGCCGGGGCTGCTGAACTTCTGGCCCGTCCGCTGGGAACCAC
CGGCCCACGCGCAAAGTTGCCAGTGA
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