prot_Ecto-sp13_S_contig63414.17093.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig63414.17093.1
Unique Nameprot_Ecto-sp13_S_contig63414.17093.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length142
Homology
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BLAST of mRNA_Ecto-sp13_S_contig63414.17093.1 vs. uniprot
Match: UPI00141D783F (hypothetical protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI00141D783F)

HSP 1 Score: 271 bits (694), Expect = 4.360e-92
Identity = 123/135 (91.11%), Postives = 127/135 (94.07%), Query Frame = 0 
Query:    7 LLLLAVFLPGAAWAQDGPPAGYFAGEYEVVGRTPGPDGTALLDWLRIQAEGDRLILKACRSGEGHLSPNPSPSETAAPLIGTLGPWSLSCHFMGDSDNYPRLSCYAVTDDAMKVPGLLNFWPVRWEPPAHAQSCQ 141
            L LL   LP AAWAQDGPPAGYFAGEYEVVGRTPGPDGTALLD LRIQAEGDRL++KACRSGEGHLSPNPSPSETAAPLIGTLG WSLSCHFMGDSDNYPRLSCYAVTDDAM+VPGLLNFWP RWEPPAHAQ+CQ
Sbjct:    7 LFLLVTLLPAAAWAQDGPPAGYFAGEYEVVGRTPGPDGTALLDLLRIQAEGDRLVIKACRSGEGHLSPNPSPSETAAPLIGTLGSWSLSCHFMGDSDNYPRLSCYAVTDDAMEVPGLLNFWPARWEPPAHAQNCQ 141
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63414.17093.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00141D783F4.360e-9291.11hypothetical protein n=1 Tax=Pelagibius litoralis ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..141
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..20
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.914

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63414contigEcto-sp13_S_contig63414:101..526 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63414.17093.1mRNA_Ecto-sp13_S_contig63414.17093.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig63414 101..526 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig63414.17093.1 ID=prot_Ecto-sp13_S_contig63414.17093.1|Name=mRNA_Ecto-sp13_S_contig63414.17093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
MTSLSKLLLLAVFLPGAAWAQDGPPAGYFAGEYEVVGRTPGPDGTALLDW
LRIQAEGDRLILKACRSGEGHLSPNPSPSETAAPLIGTLGPWSLSCHFMG
DSDNYPRLSCYAVTDDAMKVPGLLNFWPVRWEPPAHAQSCQ*
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