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Homology
BLAST of mRNA_Ecto-sp13_S_contig6341.17092.1 vs. uniprot
Match: D8LD93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD93_ECTSI) HSP 1 Score: 467 bits (1202), Expect = 4.780e-160 Identity = 329/479 (68.68%), Postives = 336/479 (70.15%), Query Frame = 1
Query: 1 MLTRKQQWRRVRGPRSSVETHQLAGRGGGKTCQRAAGVPCAPAHPRAINSLSIDDSL-RLVATGRPATSDEGDEPTAAAXXXXXXXXAVPSSSVRPPRVDERDAICVGSNVRFNHQVRVVLVPSRKELRPLMEELWWGTNDYVEFRREFVQAMRETAAAKVENKANQERPSDQGTPSVSEIQDTAVAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADDLLPPLPRSPPSPLFSATLTTPLPPSRGAAGAAPPCAVKVSNIFPTAGGPAEGQEDGGGYDGGLLRPAAPGVVLVATSIPPEALTLASAATVREXXXXXXXXXXXXXXXXXRR-GRKKEGTSLLPSPGSFSSSRDSWRLVAPAVQELRRAERVKRAADFNWAPIAGPSTVAAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GCDDSEEESGHVCGRDGECRGATKTITKPPQQPGCGPDLFFRDERTVCMA 1428
MLTRKQQWRRVRGPRSSVETHQLA RGG KTC RAA VP A AHPRAINSLSIDDSL RLVATGRPA SDE XXXXXXX AVPSSSVR P VDE AI VGSNVRFNHQVRVVLVPSRKELRPL+EELWWGTNDYVEFRREFVQAMRE AAA+VEN+ANQE TPSV EIQDT VSNIFPT GGPAEGQEDGG DGGLLRPAAPGVVLVATSIPPEALTLAS XXXXXXXXXXXXXXXXX GRKKEGTSLLPSPGSFSSSRDSWRLVAPAVQELRRAERVKRAADFNWAPIAGPST A XXXXXXXXXXXXXXXXXX GCDDS+EESGH CG+D ECRGA KT+T+ PQQPGCGPDLF RDERTVCMA
Sbjct: 1 MLTRKQQWRRVRGPRSSVETHQLADRGGRKTCPRAARVPDALAHPRAINSLSIDDSLLRLVATGRPAASDE------EXXXXXXXXPAVPSSSVRRPVVDEIGAIRVGSNVRFNHQVRVVLVPSRKELRPLIEELWWGTNDYVEFRREFVQAMREAAAAEVENRANQE------TPSVPEIQDT-------------------------------------------------------------------------------VSNIFPTVGGPAEGQEDGGDCDGGLLRPAAPGVVLVATSIPPEALTLASXXXXXXXXXXXXXXXXXXXXXXXXXXGRKKEGTSLLPSPGSFSSSRDSWRLVAPAVQELRRAERVKRAADFNWAPIAGPSTAAXXXXXXXXXXXXXXXXXXXXXGYRTHSLSSASEEGCDDSDEESGHGCGKDEECRGAAKTMTRSPQQPGCGPDLFSRDERTVCMA 388
BLAST of mRNA_Ecto-sp13_S_contig6341.17092.1 vs. uniprot
Match: A0A6H5KW42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW42_9PHAE) HSP 1 Score: 434 bits (1115), Expect = 1.540e-145 Identity = 325/490 (66.33%), Postives = 335/490 (68.37%), Query Frame = 1
Query: 1 MLTRKQQWRRVRGPRSSVETHQLAGRGGGKTCQRAAGVPCAPAHPRAINSLSIDDSL-RLVATGRPATSDEGDEPTAAAXXXXXXXXAVPSSSVRPPRVDERDAICVGSNVRFNHQVRVVLVPSRKELRPLMEELWWGTNDYVEFRREFVQAMRETAAAKVENKANQERPSDQGTPSVSEIQDTAVAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADDLLPPLPRSPPSPLFSATLTTPLPPSRGAAGA-APPCAVKVSNIFPTAGGPAEGQEDGGGYDGGLLRPAAPGVVLVATSIPPEALTLASAATVREXXXXXXXXXXXXXXXXXRRGRKKEGTSLLPSPGSFSSSRDSWRLVAPAVQELRRAERVKRA------------ADFNWAPIAGPSTVAAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCDDSEEESGHVCGRDGECRGATKTITKPPQQPGCGPDLFFRDERTVCMA 1428
MLTRKQQWRRVRGPRSSVETHQLA RGGG+TCQR AG P APAHPRAINSLSIDDSL RL ATGRPA SD XXXXXXX AVPSSSVRPP+VD+ DA CVGSNVRFNHQVRVVLVPSRKELRPLMEELWWGTNDYVEFRREFVQAMRE AA KVENKANQE PSD S SEIQDTAVAAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AP CAVKVSN+FPTAGGPAEGQEDGGG DG XXXXXXXXXXXXXXXXX GRKKEGTSLLPSPGSFSS RDSWRLVAP VQELRRAERV AD +WAPIAGPST AA+ G D+S+EESG+ CGRD ECRGA KTITKPPQQPGCGP+LF RDERTVCMA
Sbjct: 1 MLTRKQQWRRVRGPRSSVETHQLADRGGGQTCQRVAGAPGAPAHPRAINSLSIDDSLLRLAATGRPAASDXXXXXXXXXXXXXXXXPAVPSSSVRPPKVDKSDAFCVGSNVRFNHQVRVVLVPSRKELRPLMEELWWGTNDYVEFRREFVQAMREAAATKVENKANQETPSDXXXXSASEIQDTAVAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPACAVKVSNMFPTAGGPAEGQEDGGGCDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKKEGTSLLPSPGSFSSPRDSWRLVAPVVQELRRAERVXXXXXXXXXXXXXXXADLSWAPIAGPSTAAAQ------------DEEEDGGYRTHSLSSASEEGRDNSDEESGYGCGRDEECRGAAKTITKPPQQPGCGPNLFSRDERTVCMA 478
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1431 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 1431 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463878.9041312-CDS-Ecto-sp13_S_contig6341:1190..2187 | 1681463878.9041312-CDS-Ecto-sp13_S_contig6341:1190..2187 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6341 1191..2187 - |
| 1681463878.9143598-CDS-Ecto-sp13_S_contig6341:5652..6086 | 1681463878.9143598-CDS-Ecto-sp13_S_contig6341:5652..6086 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig6341 5653..6086 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6341.17092.1 >prot_Ecto-sp13_S_contig6341.17092.1 ID=prot_Ecto-sp13_S_contig6341.17092.1|Name=mRNA_Ecto-sp13_S_contig6341.17092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=477bp
MLTRKQQWRRVRGPRSSVETHQLAGRGGGKTCQRAAGVPCAPAHPRAINS LSIDDSLRLVATGRPATSDEGDEPTAAATAAAAAAPAVPSSSVRPPRVDE RDAICVGSNVRFNHQVRVVLVPSRKELRPLMEELWWGTNDYVEFRREFVQ AMRETAAAKVENKANQERPSDQGTPSVSEIQDTAVAAATTASEATESTAT TSSPPASGARGSSGSSSSSGVADDLLPPLPRSPPSPLFSATLTTPLPPSR GAAGAAPPCAVKVSNIFPTAGGPAEGQEDGGGYDGGLLRPAAPGVVLVAT SIPPEALTLASAATVREPPATAERRRKNSTADGGRRGRKKEGTSLLPSPG SFSSSRDSWRLVAPAVQELRRAERVKRAADFNWAPIAGPSTVAAKAAAAA VAAAAAQDEEEDGGYRTNSLSSASEEGCDDSEEESGHVCGRDGECRGATK TITKPPQQPGCGPDLFFRDERTVCMA* back to topmRNA from alignment at Ecto-sp13_S_contig6341:1191..6086- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig6341.17092.1 ID=mRNA_Ecto-sp13_S_contig6341.17092.1|Name=mRNA_Ecto-sp13_S_contig6341.17092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4896bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6341:1191..6086- (Ectocarpus species13 EcNAP12_S_4_19m) ATGTTGACGCGCAAGCAACAGTGGCGCCGAGTGAGGGGGCCGAGGTCGTC
CGTGGAAACACACCAGCTCGCCGGTAGAGGCGGCGGAAAGACCTGCCAGC
GTGCCGCTGGGGTGCCGTGTGCGCCCGCCCACCCTCGAGCCATCAACTCT
CTGAGCATCGATGATTCTCTCCGTCTGGTTGCGACCGGTCGCCCCGCTAC
CAGCGATGAAGGAGACGAGCCTACGGCCGCCGCCACCGCCGCCGCCGCCG
CTGCCCCGGCTGTCCCAAGCAGCAGCGTGCGCCCACCTAGGGTTGATGAA
CGTGACGCCATCTGCGTTGGAAGCAACGTTCGGTTCAACCACCAAGTGAG
AGTGGTCTTGGTGCCTTCAAGGAAGGAGCTCCGTCCGCTCATGGAGGAGC
TCTGGTGGGGAACGAACGACTACGTTGAGTTCAGGTGAGAACGGCATGTG
ACAGCATCAATAACGTCATAGGTTAGAGTAGCCGAGCTGAAGAAATGGAA
GTTGATGAGGAGCAACTTGGGTAGAGCAGGTTGGAGAGACGTTTTTCGTA
CACACTGCTGGCTCTCTCTGCCAAACAGCTGAGCTCCCAGGGCCCCTTCG
TACACCAGGCCGGTTAAAAAGCTACACGCGTTTACCGTATGCAGAGATTG
TCGGTAAGGGACAACCCTCTCGCGAGTACACCGCACCCCGCCGGAATTCC
CTTCAACCTCACTCAGGATCCAAATAGGCTCCGCTGGGGACGCGTATCAT
GTCCGTTGCCATGCACCCTCACGAGAATGAACGAATGCTACTTTTATAAT
AAACCAGTTGTACACATAACGTTCACCCGCACACAGTCCCTTTGCGTCAA
CGAAAGCTATCTCGGAATTAAGGATACGTGTTCACGCACATGCATAGTTT
CCGCTTCCGGCGCGTCGATCTGCGGGGGGGGGGGTTCTGCGGTAATTGTA
GCGCGTACGAGACCGCGTAAAGTTTTGGAATGGATCATCCGAACAGCAGA
TGGCTTTTGTGCGCCCCAAAAGGCGGGGGGTTGACTTGTGACCAACCGCT
TGGTGATAAAAACCGCAGCAGTTTTCTTGAGGAGTGCAGCCTTTCACCGG
ACCATTTGTCACTTGTCCTCGCTTGGCCCCTTCAAGCGACTGCTTTGTGG
TTGCACGAAACAGAGAAATGCCTCATACCAGCCAGAGTTCCCACCTCTTT
GTTTTGACTTGCTGACTCGGCAGGGCGGTTCAACGGATAGTTCTTTACAG
TCAGCAGGGCATGGTTCAGCGTGCGATGTTCTTCCCGCTGTTGACATTTA
TCTTTCCCGCTGCCACCTCCTTTAGTCGGTTGTACAAGGTTAAACTTTTA
CAATGTATCATGCTTCTTTTTTTTTCAATTATTTATTTGAACCCGAATCC
GTCTCACGTGTGATTATTTGTTGGGGCTTTGTTGGGAACCCTTGTCTTGA
ACGAGTTGTAGGTTGACAACATGTGCATATTTATTTCTCCTTAATACACA
GCGAACACTCCAAGGAATAGATTTTTCCTGCCAGTTTCGGCTCTTCCTAG
ACTCCCACTTCTACCTGTTCACTCCAGCGGCCGCCGCACTGCTGTGGACA
AAACGAGAGGGGTAAACTACTTTGACACCCGACCCCAAGCATACCGGATT
AGACTGCAATATTGTGGGATTCCTGTAGTGTTCGCGATGTGTTTTTTACA
TGTATTGTACCCGAGCGTCGGGCGTCGACCGAACAATCCTACCCTTTAAA
TCCTACCTCTAAAACCCCAACCCCGTCTCCGCACCCCAAGCGCGGCTTCA
ACACGCGTTCCGCACCACGTGAAAAAAGCTGGTGAAAAACAAACACAAGA
TGGCATCGCATACTTCTCCTGTGTCAGGAAAACTGACTGTGTGCTTCTAC
CGGGGATAGTCACTACATGCGTGGTCGCGGCGTGTTTTTCGCTATGATGT
GCTCTGAGTAGAACATATTTTTGGGTGATTTTCGCCAACTTTGACGATGC
CGGACTCAGGTGTCAAAGAGTAAAAATATTGTCAATACATCTGTATGATG
GTTCCGAAACATCTTCAACTTGAAAGCCTTCGCCAGATGGTCCCCATCTT
TCATCATCAACAAGTCCTCGCTCAGAGCAATGGAGTATTATCTGAAATAC
TTCGAATCCATCGATTGCACGGCCGCACTTCCCTCGAGTGCGTGCGTGTG
GGTTCACGTGCTTGCCCTCCTCTCTCACCCTCTTCACCTTTTCATGCGGT
GCAATTGGTGGGTTTTCATTCCATTTTGGAGGCATAAAGTGGGACGTGCC
AACCATGCGGAATTACGGCAGGGCGCCCATGAATAGGGCAATTTTTTGTA
AGACACGGAAGAACTTCCAACAAATATCTATGTTTCAGAGGGGGTAAAGC
CGGGCAGATGCCCATCTCCCACCAATCACCCGTCGAGTTTGTAAGACATT
TTGTAAGACAGAGACAGATGATCGGACGATGGGCACGACGCTCTCGGCAC
AATCACCGAAATCCTCTTGCACAGCAGCACCATACACATCACGTAGACAA
CATACGACACAACCAGCACAGCAGTATACGGACTGCTGCAAGCCAATGGA
AGCCAAAGGCACACATCATGGGAGGCGTTGGGTATGACTCTTGCAGCCTA
CACACTGCTGTGGGCCAAGGCCGGCCAAAGGAACACATCATAGCTGGCGT
CGGAAGTTATGTTAAAACCCCGTGGCCTACTGCTAGCAGCGTAAGCGAGG
GAACATGCGAGTGGACACAGGTCAGATCTCTGACTGCGGTCACTTCGTCT
GCCGGCCGATCTTTGCTTCCACAACAGACGCATCCCAGAAAAAAAGACAA
GTGAGACGTGCACAGCGCTGTAAGCCAAGGGCGACCAACAAAACACGTCG
TGGGAGGGGTCCGGGCCAACTTTTTTTGAGCCCGTTGCCCTCTGCTAGTA
GCGAAAGCGAAGAAAGCAAGTGCGCACACATCCACAGCAGCAGAAGCGGC
GGCAACAACAACAGCAAGCAGCAGCAGCAGCAGCAGCACTGCTGCCGCTG
AGCTGATGATGATGAGAGCTAAACAGCGCTCCGATTCATCCCCTGACTGA
CTGGTGGTATCGGGTGAGGTGTGAGCGTGCGCACTGGTAACCTACGAGGT
GGTGCAGGCCCCATCCATATCTATGTACGCTTGCTTTGATATCTCTCTCC
GACCCTTCTCTTCGCGCTTCGCGCGAATTAATTTAATTTTTTTTGTTGGA
CCCCGATGTATGGGAGGGCAGCCGGAACTACTGGCTGTACTGGCACTGAG
CCAGTCCTCGGAAACTGACCAGTACAAGAATGCTGACTACTTGCTGTCAG
CTGATACTGATCCAATCCCCTACCTATTTCAGGGTTGGTCTGGTTGGTCG
TGGCGACGTAAGGCCGTGGCGGCTGCTGGAAGAGGAACGACACACCCCTA
AAGCTATTTCTCTCATGAAGCCTCTTGTGATTGTGCGGCTACGCGGGCCG
GCTTATCTTACCCTGGCCCGCCGGCGCCTGGTAATCAGTCGAATGCACAT
GGACACGAAAGACCACGCCTGAGTGGTTGGACAATACCCAAGATGATACA
TGCAAGCTACTCCAACACCCCCAAGCGCGACGATTTTGAAAGCTCGATTA
CTCCACGACGAACAGGATGCATATGTGAAACGATACGTGTTCGGAAAGCT
CTCGACGAGACGGTAGCAAGTCCGCCGTTGTCCGCGTCTCCACTCTTTCT
GCTAGTCGAGCTTTGAAAATCGACCCAGGTGGTGTGACGTCTTTCCTCAA
CCACGGTATTCAACGAGCTTTCGTGCCCCCCCCCCGGTATCGCGCTCTGA
CATATACAAGCTCTCCAACTTAACCCCCATGTACGCAAAACCCACCCAGG
CGCGAGTTCGTCCAAGCAATGAGGGAGACAGCCGCCGCCAAGGTGGAAAA
CAAAGCCAACCAAGAACGACCATCTGACCAAGGAACACCATCTGTGTCGG
AGATCCAAGACACGGCAGTCGCCGCTGCCACAACAGCATCGGAGGCGACC
GAATCGACCGCGACCACGTCGTCTCCCCCCGCTTCGGGGGCTCGGGGCAG
CAGCGGCAGCAGCAGCAGCAGCGGCGTTGCAGATGACCTCTTGCCTCCTC
TCCCACGCTCGCCGCCGTCGCCTCTTTTCTCCGCGACCCTGACGACCCCT
CTCCCGCCGTCACGCGGCGCCGCTGGCGCCGCCCCGCCTTGCGCCGTCAA
GGTGTCCAACATATTCCCGACGGCGGGTGGCCCGGCCGAGGGCCAGGAAG
ACGGCGGCGGCTACGACGGTGGGCTGCTCCGGCCGGCGGCCCCGGGGGTT
GTGCTCGTCGCCACCTCGATCCCGCCGGAGGCGCTAACCCTAGCGTCGGC
GGCAACGGTGAGGGAGCCGCCGGCCACCGCGGAACGCCGCCGGAAAAATT
CGACGGCGGACGGGGGCCGGCGGGGGCGGAAGAAGGAGGGGACGTCACTG
CTGCCGTCACCGGGGTCGTTTTCATCCTCGCGGGATTCGTGGCGCCTCGT
GGCCCCGGCGGTGCAGGAGTTGCGCCGGGCGGAGCGCGTGAAGCGGGCAG
CGGACTTCAATTGGGCCCCGATCGCCGGGCCATCCACGGTGGCGGCGAAA
GCGGCGGCGGCGGCGGTAGCGGCGGCGGCGGCACAGGACGAAGAAGAGGA
CGGGGGGTACCGCACCAACTCGTTGAGCTCAGCGTCGGAAGAAGGCTGTG
ATGACAGCGAAGAGGAGAGCGGGCACGTCTGCGGTAGGGACGGGGAGTGC
AGGGGCGCGACCAAGACGATCACCAAGCCTCCCCAGCAGCCAGGGTGCGG
CCCCGACTTGTTCTTCCGCGATGAGCGCACCGTCTGCATGGCATGA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig6341:1191..6086- >mRNA_Ecto-sp13_S_contig6341.17092.1 ID=mRNA_Ecto-sp13_S_contig6341.17092.1|Name=mRNA_Ecto-sp13_S_contig6341.17092.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1431bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6341:1191..6086- (Ectocarpus species13 EcNAP12_S_4_19m) ATGTTGACGCGCAAGCAACAGTGGCGCCGAGTGAGGGGGCCGAGGTCGTC CGTGGAAACACACCAGCTCGCCGGTAGAGGCGGCGGAAAGACCTGCCAGC GTGCCGCTGGGGTGCCGTGTGCGCCCGCCCACCCTCGAGCCATCAACTCT CTGAGCATCGATGATTCTCTCCGTCTGGTTGCGACCGGTCGCCCCGCTAC CAGCGATGAAGGAGACGAGCCTACGGCCGCCGCCACCGCCGCCGCCGCCG CTGCCCCGGCTGTCCCAAGCAGCAGCGTGCGCCCACCTAGGGTTGATGAA CGTGACGCCATCTGCGTTGGAAGCAACGTTCGGTTCAACCACCAAGTGAG AGTGGTCTTGGTGCCTTCAAGGAAGGAGCTCCGTCCGCTCATGGAGGAGC TCTGGTGGGGAACGAACGACTACGTTGAGTTCAGGCGCGAGTTCGTCCAA GCAATGAGGGAGACAGCCGCCGCCAAGGTGGAAAACAAAGCCAACCAAGA ACGACCATCTGACCAAGGAACACCATCTGTGTCGGAGATCCAAGACACGG CAGTCGCCGCTGCCACAACAGCATCGGAGGCGACCGAATCGACCGCGACC ACGTCGTCTCCCCCCGCTTCGGGGGCTCGGGGCAGCAGCGGCAGCAGCAG CAGCAGCGGCGTTGCAGATGACCTCTTGCCTCCTCTCCCACGCTCGCCGC CGTCGCCTCTTTTCTCCGCGACCCTGACGACCCCTCTCCCGCCGTCACGC GGCGCCGCTGGCGCCGCCCCGCCTTGCGCCGTCAAGGTGTCCAACATATT CCCGACGGCGGGTGGCCCGGCCGAGGGCCAGGAAGACGGCGGCGGCTACG ACGGTGGGCTGCTCCGGCCGGCGGCCCCGGGGGTTGTGCTCGTCGCCACC TCGATCCCGCCGGAGGCGCTAACCCTAGCGTCGGCGGCAACGGTGAGGGA GCCGCCGGCCACCGCGGAACGCCGCCGGAAAAATTCGACGGCGGACGGGG GCCGGCGGGGGCGGAAGAAGGAGGGGACGTCACTGCTGCCGTCACCGGGG TCGTTTTCATCCTCGCGGGATTCGTGGCGCCTCGTGGCCCCGGCGGTGCA GGAGTTGCGCCGGGCGGAGCGCGTGAAGCGGGCAGCGGACTTCAATTGGG CCCCGATCGCCGGGCCATCCACGGTGGCGGCGAAAGCGGCGGCGGCGGCG GTAGCGGCGGCGGCGGCACAGGACGAAGAAGAGGACGGGGGGTACCGCAC CAACTCGTTGAGCTCAGCGTCGGAAGAAGGCTGTGATGACAGCGAAGAGG AGAGCGGGCACGTCTGCGGTAGGGACGGGGAGTGCAGGGGCGCGACCAAG ACGATCACCAAGCCTCCCCAGCAGCCAGGGTGCGGCCCCGACTTGTTCTT CCGCGATGAGCGCACCGTCTGCATGGCATGA back to top
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