mRNA_Ecto-sp13_S_contig634.17088.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig634.17088.1
Unique NamemRNA_Ecto-sp13_S_contig634.17088.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig634.17088.1 vs. uniprot
Match: D7G4B5_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B5_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.140e-41
Identity = 85/158 (53.80%), Postives = 95/158 (60.13%), Query Frame = 1 
Query:    1 MHRVYRGVEESSEVDGIVKEEMWTDGIRGAETREGESAMXXXXXXXSCTLNGCTRKPTHGAKGKKAEFCMSHTFAGLVNVTWSAPLTVVSRMRSSAWRAARRGSFVRNMRQAAW*T*PSGVALPKVASRK-----QPMVWQAARRNPARYMQRRGWST 459
            MHR++RG EESSEVDG VKEEMWTDGIRGAETR+GE A+       SC L+GCTRKPTHG KGKKA FC+SH  AG VNVT               +  A+ G       +      PSGV    V S         MV QAARRNPAR +QRRGWST
Sbjct:    1 MHRLFRGAEESSEVDGNVKEEMWTDGIRGAETRKGEQALGGSPLGESCPLDGCTRKPTHGVKGKKAVFCVSHIIAGSVNVTKECTA-------DGCFTGAKFGVAGSKKEKFCSKHAPSGVVNLAVTSCATEGCFMDMVQQAARRNPARCIQRRGWST 151
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BLAST of mRNA_Ecto-sp13_S_contig634.17088.1 vs. uniprot
Match: D7G4X8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X8_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 4.320e-21
Identity = 53/83 (63.86%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:    1 MHRVYRGVEESSEVDGIVKEEMWTDGIRGAET-REGESAMXXXXXXXS-CTLNGCTRKPTHGAKGKKAEFCMSHTFAGLVNVT 243
            MHR+YRG  ESSE  G+VKEEMW+D IR AE  REGE AM       S CTL GCTRKPTHG  GKKAEFC  H+ A  VNV+
Sbjct:    1 MHRLYRGGGESSEFGGVVKEEMWSDDIREAEDEREGELAMSDSHVGGSSCTLYGCTRKPTHGVAGKKAEFCARHSLATSVNVS 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig634.17088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4B5_ECTSI1.140e-4153.80EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G4X8_ECTSI4.320e-2163.86EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig634contigEcto-sp13_S_contig634:3938..4396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score99.4
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog2880.D7G4X8
Model size459
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs29ZCP@1,2RXW0@2759
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-02_002070.1
Cds size345
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463878.612601-UTR-Ecto-sp13_S_contig634:3937..40511681463878.612601-UTR-Ecto-sp13_S_contig634:3937..4051Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig634 3938..4051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463878.6262515-CDS-Ecto-sp13_S_contig634:4051..43961681463878.6262515-CDS-Ecto-sp13_S_contig634:4051..4396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig634 4052..4396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig634.17088.1prot_Ecto-sp13_S_contig634.17088.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig634 4052..4396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig634.17088.1

>prot_Ecto-sp13_S_contig634.17088.1 ID=prot_Ecto-sp13_S_contig634.17088.1|Name=mRNA_Ecto-sp13_S_contig634.17088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MHRVYRGVEESSEVDGIVKEEMWTDGIRGAETREGESAMGDSPLGESCTL
NGCTRKPTHGAKGKKAEFCMSHTFAGLVNVTWSAPLTVVSRMRSSAWRAA
RRGSFVRNMRQAAW*
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mRNA from alignment at Ecto-sp13_S_contig634:3938..4396-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig634.17088.1 ID=mRNA_Ecto-sp13_S_contig634.17088.1|Name=mRNA_Ecto-sp13_S_contig634.17088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig634:3938..4396- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGAGTCTACCGAGGAGTGGAGGAATCGAGCGAGGTTGATGGCAT
AGTCAAGGAAGAGATGTGGACGGATGGCATTCGAGGTGCTGAAACAAGGG
AGGGAGAGTCAGCAATGGGCGATTCACCTCTAGGTGAGAGCTGCACCTTG
AACGGATGCACGCGTAAACCTACCCACGGTGCTAAGGGCAAGAAGGCAGA
GTTCTGTATGTCACATACTTTTGCGGGCTTGGTCAATGTAACATGGAGTG
CACCGCTGACGGTTGTTTCACGGATGCGAAGTTCGGCGTGGCGGGCAGCA
AGAAGGGGAAGTTTTGTTCGAAACATGCGCCAAGCGGCATGGTGAACTTA
GCCGTCGGGAGTTGCGCTACCGAAGGTTGCTTCACGGAAGCAACCCATGG
TGTGGCAGGCAGCAAGAAGGAATCCTGCTCGATACATGCAAAGGAGGGGA
TGGTCAACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig634:3938..4396-

>mRNA_Ecto-sp13_S_contig634.17088.1 ID=mRNA_Ecto-sp13_S_contig634.17088.1|Name=mRNA_Ecto-sp13_S_contig634.17088.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig634:3938..4396- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGAGTCTACCGAGGAGTGGAGGAATCGAGCGAGGTTGATGGCAT
AGTCAAGGAAGAGATGTGGACGGATGGCATTCGAGGTGCTGAAACAAGGG
AGGGAGAGTCAGCAATGGGCGATTCACCTCTAGGTGAGAGCTGCACCTTG
AACGGATGCACGCGTAAACCTACCCACGGTGCTAAGGGCAAGAAGGCAGA
GTTCTGTATGTCACATACTTTTGCGGGCTTGGTCAATGTAACATGGAGTG
CACCGCTGACGGTTGTTTCACGGATGCGAAGTTCGGCGTGGCGGGCAGCA
AGAAGGGGAAGTTTTGTTCGAAACATGCGCCAAGCGGCATGGTGA
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