mRNA_Ecto-sp13_S_contig6338.17086.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6338.17086.1
Unique NamemRNA_Ecto-sp13_S_contig6338.17086.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6338.17086.1 vs. uniprot
Match: A0A6H5L3S5_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3S5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.740e-14
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 RCPHPNSKHYCHGKCKVCYMKEYNHKTRMQGTA 99
            +CPHPNSKHYCHGKCKVCYMKEYN KTRMQG A
Sbjct:  122 QCPHPNSKHYCHGKCKVCYMKEYNQKTRMQGAA 154
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BLAST of mRNA_Ecto-sp13_S_contig6338.17086.1 vs. uniprot
Match: D7FSE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE8_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 3.650e-8
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:   58 MKEYNHKTRMQGTAGKPPGKKPAAVTG 138
            MKEYN KTRMQG AGKPPGKKPA VTG
Sbjct:    1 MKEYNQKTRMQGAAGKPPGKKPAVVTG 27
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6338.17086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3S5_9PHAE1.740e-1490.91PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FSE8_ECTSI3.650e-888.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6338contigEcto-sp13_S_contig6338:7235..7759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size140
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463878.4159737-CDS-Ecto-sp13_S_contig6338:7236..73111681463878.4159737-CDS-Ecto-sp13_S_contig6338:7236..7311Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6338 7237..7311 -
1681463878.4395056-CDS-Ecto-sp13_S_contig6338:7696..77591681463878.4395056-CDS-Ecto-sp13_S_contig6338:7696..7759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6338 7697..7759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6338.17086.1prot_Ecto-sp13_S_contig6338.17086.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6338 7237..7759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6338.17086.1

>prot_Ecto-sp13_S_contig6338.17086.1 ID=prot_Ecto-sp13_S_contig6338.17086.1|Name=mRNA_Ecto-sp13_S_contig6338.17086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
RCPHPNSKHYCHGKCKVCYMKEYNHKTRMQGTAGKPPGKKPAAVTG
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mRNA from alignment at Ecto-sp13_S_contig6338:7235..7759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6338.17086.1 ID=mRNA_Ecto-sp13_S_contig6338.17086.1|Name=mRNA_Ecto-sp13_S_contig6338.17086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6338:7235..7759- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCCCGCATCCCAACAGCAAGCACTACTGCCACGGGAAGTGCAAGGT
TTGCTACATGAAGGTCAGTCGGTTGCCCAGGGCCCTCCCACACTCTCTCT
CTTTAACAGCTCATTTGATCGAGTGTGTTGCAGTTGCGTCGGCGTTGGGT
TGAAGTCGGTTTTTATAGTAGAAGTGGCGGTGGTGGTGCCATTGTTGTCG
ATATTGGTGTTTGCGTTTGTTGTGGTTTGGAGTCGTTTTACATGGTAGTG
TGGTCTTGGTGGTGTTGTTGGTGACGGTGGTGGTGATGTTGTTCTGGCGC
TGTTGTTCGTGCTGCTGCTACTGCTACTGCTACTGCTGCTGCTGCTGCTG
CTGCTGATACCGCTGTCGCTGACGTTGTTATTTCGTTGATGTATGCACTC
GCCAACGACCACCCTGTCCTTTGCCGTGTACCCCTTCGCCCATGGCAGGA
GTACAACCATAAGACTCGCATGCAGGGTACGGCGGGTAAGCCACCCGGCA
AAAAGCCTGCGGCTGTTACAGGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6338:7235..7759-

>mRNA_Ecto-sp13_S_contig6338.17086.1 ID=mRNA_Ecto-sp13_S_contig6338.17086.1|Name=mRNA_Ecto-sp13_S_contig6338.17086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6338:7235..7759- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCCCGCATCCCAACAGCAAGCACTACTGCCACGGGAAGTGCAAGGT
TTGCTACATGAAGGAGTACAACCATAAGACTCGCATGCAGGGTACGGCGG
GTAAGCCACCCGGCAAAAAGCCTGCGGCTGTTACAGGC
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