prot_Ecto-sp13_S_contig63353.17082.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig63353.17082.1
Unique Nameprot_Ecto-sp13_S_contig63353.17082.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length66
Homology
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BLAST of mRNA_Ecto-sp13_S_contig63353.17082.1 vs. uniprot
Match: D7FYD2_ECTSI (Superoxide dismutase, Destroys radicals which are normally produced within the cells and which are t n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYD2_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 2.800e-29
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 0 
Query:    1 MAMGKKSSTPTLVGRCLVLSTLAAVGASAQNLPVPPLPYSYGSLVPFISEHALRVREGQHFLLKTS 66
            MAMGKKSSTPTLVGRCL LSTLAAVGASAQNLPVPPLPYSYGSLVPFISEHALRV    H    TS
Sbjct:    1 MAMGKKSSTPTLVGRCLALSTLAAVGASAQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHAAYTS 66
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BLAST of mRNA_Ecto-sp13_S_contig63353.17082.1 vs. uniprot
Match: A0A6H5JBD2_9PHAE (Superoxide dismutase [Fe] n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.970e-25
Identity = 54/66 (81.82%), Postives = 54/66 (81.82%), Query Frame = 0 
Query:    1 MAMGKKSSTPTLVGRCLVLSTLAAVGASAQNLPVPPLPYSYGSLVPFISEHALRVREGQHFLLKTS 66
            MAM KKSSTP LVGRCL LSTLAAVG SAQNLPVPPLPYSYGSLVPFISEHALRV    H    TS
Sbjct:    1 MAMRKKSSTPMLVGRCLALSTLAAVGTSAQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHAAYTS 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63353.17082.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYD2_ECTSI2.800e-2986.36Superoxide dismutase, Destroys radicals which are ... [more]
A0A6H5JBD2_9PHAE1.970e-2581.82Superoxide dismutase [Fe] n=1 Tax=Ectocarpus sp. C... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..66
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..29
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..29
score: 0.628
NoneNo IPR availableTMHMMTMhelixcoord: 12..34
IPR036324Manganese/iron superoxide dismutase, N-terminal domain superfamilySUPERFAMILY46609Fe,Mn superoxide dismutase (SOD), N-terminal domaincoord: 30..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63353contigEcto-sp13_S_contig63353:168..365 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63353.17082.1mRNA_Ecto-sp13_S_contig63353.17082.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig63353 168..365 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig63353.17082.1 ID=prot_Ecto-sp13_S_contig63353.17082.1|Name=mRNA_Ecto-sp13_S_contig63353.17082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
MAMGKKSSTPTLVGRCLVLSTLAAVGASAQNLPVPPLPYSYGSLVPFISE
HALRVREGQHFLLKTS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036324Mn/Fe_SOD_N_sf