mRNA_Ecto-sp13_S_contig63353.17082.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig63353.17082.1
Unique NamemRNA_Ecto-sp13_S_contig63353.17082.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig63353.17082.1 vs. uniprot
Match: D7FYD2_ECTSI (Superoxide dismutase, Destroys radicals which are normally produced within the cells and which are t n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYD2_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 2.800e-29
Identity = 57/66 (86.36%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 MAMGKKSSTPTLVGRCLVLSTLAAVGASAQNLPVPPLPYSYGSLVPFISEHALRVREGQHFLLKTS 198
            MAMGKKSSTPTLVGRCL LSTLAAVGASAQNLPVPPLPYSYGSLVPFISEHALRV    H    TS
Sbjct:    1 MAMGKKSSTPTLVGRCLALSTLAAVGASAQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHAAYTS 66
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BLAST of mRNA_Ecto-sp13_S_contig63353.17082.1 vs. uniprot
Match: A0A6H5JBD2_9PHAE (Superoxide dismutase [Fe] n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD2_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.970e-25
Identity = 54/66 (81.82%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 MAMGKKSSTPTLVGRCLVLSTLAAVGASAQNLPVPPLPYSYGSLVPFISEHALRVREGQHFLLKTS 198
            MAM KKSSTP LVGRCL LSTLAAVG SAQNLPVPPLPYSYGSLVPFISEHALRV    H    TS
Sbjct:    1 MAMRKKSSTPMLVGRCLALSTLAAVGTSAQNLPVPPLPYSYGSLVPFISEHALRVHHLGHHAAYTS 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63353.17082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYD2_ECTSI2.800e-2986.36Superoxide dismutase, Destroys radicals which are ... [more]
A0A6H5JBD2_9PHAE1.970e-2581.82Superoxide dismutase [Fe] n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63353contigEcto-sp13_S_contig63353:168..365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size198
Hectar predicted targeting categorysignal peptide
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463878.2000365-CDS-Ecto-sp13_S_contig63353:167..3651681463878.2000365-CDS-Ecto-sp13_S_contig63353:167..365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63353 168..365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63353.17082.1prot_Ecto-sp13_S_contig63353.17082.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig63353 168..365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig63353.17082.1

>prot_Ecto-sp13_S_contig63353.17082.1 ID=prot_Ecto-sp13_S_contig63353.17082.1|Name=mRNA_Ecto-sp13_S_contig63353.17082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
MAMGKKSSTPTLVGRCLVLSTLAAVGASAQNLPVPPLPYSYGSLVPFISE
HALRVREGQHFLLKTS
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mRNA from alignment at Ecto-sp13_S_contig63353:168..365-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig63353.17082.1 ID=mRNA_Ecto-sp13_S_contig63353.17082.1|Name=mRNA_Ecto-sp13_S_contig63353.17082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63353:168..365- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATGGGGAAGAAGAGCTCGACGCCGACGCTGGTAGGACGATGCCT
CGTTCTGTCTACGCTGGCCGCGGTTGGCGCGAGCGCCCAGAACCTCCCCG
TGCCTCCCCTCCCCTACTCGTACGGATCCTTGGTGCCCTTCATCAGCGAA
CACGCGTTGAGGGTGAGGGAAGGCCAGCATTTTCTGCTGAAGACTAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63353:168..365-

>mRNA_Ecto-sp13_S_contig63353.17082.1 ID=mRNA_Ecto-sp13_S_contig63353.17082.1|Name=mRNA_Ecto-sp13_S_contig63353.17082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63353:168..365- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATGGGGAAGAAGAGCTCGACGCCGACGCTGGTAGGACGATGCCT
CGTTCTGTCTACGCTGGCCGCGGTTGGCGCGAGCGCCCAGAACCTCCCCG
TGCCTCCCCTCCCCTACTCGTACGGATCCTTGGTGCCCTTCATCAGCGAA
CACGCGTTGAGGGTGAGGGAAGGCCAGCATTTTCTGCTGAAGACTAGT
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