mRNA_Ecto-sp13_S_contig12.1708.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12.1708.1
Unique NamemRNA_Ecto-sp13_S_contig12.1708.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 8.490e-71
Identity = 107/131 (81.68%), Postives = 115/131 (87.79%), Query Frame = 1
Query:    1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHTGEAGTRKYFEL 393
            MCRVMGG LALL+EIEQNNLTWRSVEGG  IQQAL+EPIEY+ +EKST VKEC VRDALA LVGGE EVETPAG IDVLS TEVIE+KY KQWK GLGQVLAYH F+P LAKRLHLFAH GE GT+KYF+L
Sbjct:    1 MCRVMGGDLALLKEIEQNNLTWRSVEGGPAIQQALIEPIEYQHVEKSTSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFAHAGEVGTQKYFDL 131          
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 8.480e-50
Identity = 90/131 (68.70%), Postives = 103/131 (78.63%), Query Frame = 1
Query:    1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHTGEAGTRKYFEL 393
            +CRVMGG L+L R+IEQN L W  VEGG  IQQALL P++YKE   + RV+EC+VRDALA LVGG  EVETP+GYIDVLS TEVIE+KY +QWK GLGQVLAY    P LA+RLHLFAHTG+  T KY EL
Sbjct:  233 ICRVMGGDLSLCRQIEQNALGWNCVEGGEAIQQALLRPVKYKENCVTERVRECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFAHTGDRDTDKYCEL 363          
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: D8LP52_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.210e-43
Identity = 81/130 (62.31%), Postives = 95/130 (73.08%), Query Frame = 1
Query:    1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHTGEAGTRKYFE 390
            M RVMGG L LLR IE+NNL W SV+GG VIQ+AL+EPI++ E   S RV+E  VRDALAL+VGG+ E ETP G+IDVLS TEVIE+K+   WK GLGQVL+Y    P L KRLHLFA  G   T +Y E
Sbjct:    2 MYRVMGGDLKLLRNIERNNLAWMSVQGGEVIQRALIEPIDHTEKYVSGRVREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRHYPHLDKRLHLFAQIGCKNTDQYLE 131          
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: D8LFH9_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH9_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 2.350e-43
Identity = 79/127 (62.20%), Postives = 94/127 (74.02%), Query Frame = 1
Query:   13 MGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHTGEAGTRKYFEL 393
            M G L L R+IEQNNL   SVEGG  I+QALL+P+EY+E  +STRVKE   R+ALA L+GGE EVETP+G+ID  S   VIE+KY  +WK GLGQVLAY    P LA+RLHLFAH G+  T KYFE+
Sbjct:    1 MRGDLGLCRQIEQNNLVRGSVEGGEAIRQALLQPVEYREDGESTRVKESSAREALASLIGGEREVETPSGFIDKPSDA-VIEVKYHNRWKDGLGQVLAYQSHYPRLARRLHLFAHIGDKDTDKYFEM 126          
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.650e-41
Identity = 76/120 (63.33%), Postives = 93/120 (77.50%), Query Frame = 1
Query:    1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHT 360
            +CRVMGG L+L R+IEQN L W  V+GG  IQQALL P++  E   + RV+EC+VRDALA +VGG  EVETP+GYIDVLS TEVIE+KY + WK+GLGQVL Y    P L++RLHLFAH+
Sbjct:  667 ICRVMGGDLSLCRQIEQNALGWNCVDGGEAIQQALLRPVKNIEDCVTERVRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFAHS 786          
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 3.380e-28
Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1
Query:   64 WRSV-EGGRVIQ-------QALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHTGEAGTRKYFE 390
            W SV E GR ++       +AL   +EYK   +  +VKE  VRDALA +VGGE E ETP G+IDVLS TEVIE+KY KQW+  LGQVLAY  + P LAKR+HLFA TG+  T KY E
Sbjct:  170 WESVGEEGRTVECISPRLMKALNRRVEYKP--ELFKVKESSVRDALASIVGGETEKETPVGFIDVLSDTEVIEVKYYKQWRGALGQVLAYQAYYPGLAKRVHLFAQTGKKDTEKYVE 284          
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: A0A835Z393_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z393_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.270e-27
Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPI------EYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFA 354
            +CR+MGG + ++ E+   +  W+     R +QQALL P       E+     +TR  EC VRD LAL +GG  E+ETPAG+ DV++AT VIE+K  + WK  LGQVLAYH F      R+HLFA
Sbjct:    1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTR--ECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 122          
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: B5LW94_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC)

HSP 1 Score: 108 bits (271), Expect = 1.180e-25
Identity = 55/118 (46.61%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFA 354
            MCR++GG L L   I +N L W S      ++Q L+ P+E+ E+ K     E ++RD LA  +GG+ EV TP G IDVL++TEVIE+K+ + +  G GQV+ Y  ++PLL KRLHLFA
Sbjct:  239 MCRIIGGDLRLQATINKNYLEWTSAPELEKVRQDLIAPLEHFELYKKRSGHEAVIRDKLAESLGGKTEVRTPCGRIDVLTSTEVIEVKHYRMFLHGYGQVMGYGEYHPLLKKRLHLFA 356          
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: A0A835YUG7_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 9.490e-25
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 1
Query:    1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYK---------EIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFA 354
            +CR+MG  + ++ E+E  N  W++      +QQALL  +  +         +I +   V+E  VRD LAL + G  E+ETPAG+ DV++ATEVI++K  + WK  LGQVLAYH F    +KR+HLFA
Sbjct:    1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 127          
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: A0A6H5JDC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.520e-23
Identity = 52/77 (67.53%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  163 VRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHTGEAGTRKYFEL 393
            +R   A  V G+ EVETP G IDVLS TEVIE+KY K+WK  LGQVL YHLF P LAKRLHLFAH GEAGT   F+L
Sbjct:  234 LRRKSAETVDGQTEVETPVGIIDVLSKTEVIEMKYNKKWKHALGQVLDYHLFYPRLAKRLHLFAHGGEAGTSMDFDL 310          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G319_ECTSI8.490e-7181.68FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JJP2_9PHAE8.480e-5068.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP52_ECTSI1.210e-4362.31FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LFH9_ECTSI2.350e-4362.20FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L5N7_9PHAE2.650e-4163.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L807_9PHAE3.380e-2856.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z393_9STRA6.270e-2745.97FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
B5LW94_9PHYC1.180e-2546.61Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A835YUG7_9STRA9.490e-2542.52FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus Tax... [more]
A0A6H5JDC2_9PHAE2.520e-2367.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12contigEcto-sp13_S_contig12:45899..46291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start1
Seed ortholog score68.9
Seed ortholog evalue2e-09
Seed eggNOG ortholog221288.JH992899_gene5
Model size393
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs1G9IK@1117,1JM7S@1189,29WTT@1,30IF6@2
Ec32 ortholog descriptionFirrV-1-A34
Ec32 orthologEc-00_006120.1
Cds size393
Best tax levelStigonemataceae
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462637.045779-CDS-Ecto-sp13_S_contig12:45898..462911681462637.045779-CDS-Ecto-sp13_S_contig12:45898..46291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12 45899..46291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12.1708.1prot_Ecto-sp13_S_contig12.1708.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12 45899..46291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12.1708.1

>prot_Ecto-sp13_S_contig12.1708.1 ID=prot_Ecto-sp13_S_contig12.1708.1|Name=mRNA_Ecto-sp13_S_contig12.1708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRV
KECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQV
LAYHLFNPLLAKRLHLFAHTGEAGTRKYFEL
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mRNA from alignment at Ecto-sp13_S_contig12:45899..46291-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12.1708.1 ID=mRNA_Ecto-sp13_S_contig12.1708.1|Name=mRNA_Ecto-sp13_S_contig12.1708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12:45899..46291- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTAGAGTCATGGGTGGATACTTAGCTTTGCTCCGAGAGATCGAGCA GAACAATTTGACGTGGAGATCTGTTGAGGGGGGTCGTGTCATCCAACAGG CTTTGCTTGAGCCAATCGAATACAAGGAGATTGAGAAGTCGACGAGGGTG AAGGAGTGTTTGGTGAGAGACGCTCTTGCTCTGCTTGTCGGAGGAGAAGC CGAGGTAGAAACACCTGCGGGTTACATCGATGTACTCAGCGCTACCGAGG TGATCGAGATCAAGTATATTAAGCAGTGGAAGCAGGGGCTGGGGCAAGTG CTTGCATACCATTTATTTAATCCTCTACTGGCCAAGCGTCTGCACCTTTT TGCACACACCGGAGAAGCCGGTACACGAAAATATTTCGAGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12:45899..46291-

>mRNA_Ecto-sp13_S_contig12.1708.1 ID=mRNA_Ecto-sp13_S_contig12.1708.1|Name=mRNA_Ecto-sp13_S_contig12.1708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12:45899..46291- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTAGAGTCATGGGTGGATACTTAGCTTTGCTCCGAGAGATCGAGCA
GAACAATTTGACGTGGAGATCTGTTGAGGGGGGTCGTGTCATCCAACAGG
CTTTGCTTGAGCCAATCGAATACAAGGAGATTGAGAAGTCGACGAGGGTG
AAGGAGTGTTTGGTGAGAGACGCTCTTGCTCTGCTTGTCGGAGGAGAAGC
CGAGGTAGAAACACCTGCGGGTTACATCGATGTACTCAGCGCTACCGAGG
TGATCGAGATCAAGTATATTAAGCAGTGGAAGCAGGGGCTGGGGCAAGTG
CTTGCATACCATTTATTTAATCCTCTACTGGCCAAGCGTCTGCACCTTTT
TGCACACACCGGAGAAGCCGGTACACGAAAATATTTCGAGTTG
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