mRNA_Ecto-sp13_S_contig63339.17079.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig63339.17079.1
Unique NamemRNA_Ecto-sp13_S_contig63339.17079.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig63339.17079.1 vs. uniprot
Match: A0A6H5KVK9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVK9_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.450e-22
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK 126
            QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK
Sbjct:  239 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK 280
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BLAST of mRNA_Ecto-sp13_S_contig63339.17079.1 vs. uniprot
Match: A0A7S2V3X7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3X7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.060e-14
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDW 117
            QF ECWWDSL+IDLLGANV+GM LG+  LRFLE+  YDW
Sbjct:   60 QFSECWWDSLLIDLLGANVVGMVLGMQLLRFLESHPYDW 98
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BLAST of mRNA_Ecto-sp13_S_contig63339.17079.1 vs. uniprot
Match: A0A3R6YGB5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YGB5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.330e-13
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK 126
             F ECWWDSL +DLLGAN LGM LG  TL++LET+ YDW+ K
Sbjct:   57 DFQECWWDSLFMDLLGANFLGMCLGSLTLKYLETKEYDWSGK 98
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BLAST of mRNA_Ecto-sp13_S_contig63339.17079.1 vs. uniprot
Match: A0A6G0X7J1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7J1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.760e-13
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK 126
             F ECWWDSL +DLLGAN+LGM LG  TL++LET+ YDW+ K
Sbjct:  243 DFQECWWDSLFMDLLGANLLGMCLGSLTLKYLETKEYDWSGK 284
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BLAST of mRNA_Ecto-sp13_S_contig63339.17079.1 vs. uniprot
Match: A0A397BVI2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BVI2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.930e-13
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK 126
             F ECWWDSL +DLLGAN LGM LG  TL++LET+ YDW+ K
Sbjct:  177 DFQECWWDSLFMDLLGANFLGMCLGRLTLKYLETKEYDWSGK 218
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BLAST of mRNA_Ecto-sp13_S_contig63339.17079.1 vs. uniprot
Match: A0A418BL29_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BL29_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.950e-13
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK 126
             F ECWWDSL +DLLGAN LGM LG  TL++LET+ YDW+ K
Sbjct:  179 DFQECWWDSLFMDLLGANFLGMCLGRLTLKYLETKEYDWSGK 220
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BLAST of mRNA_Ecto-sp13_S_contig63339.17079.1 vs. uniprot
Match: A0A425DKC8_9STRA (Bromo domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DKC8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.100e-13
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK 126
             F ECWWDSL +DLLGAN LGM LG  TL++LET+ YDW+ K
Sbjct:   57 DFQECWWDSLFMDLLGANFLGMCLGRLTLKYLETKEYDWSGK 98
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BLAST of mRNA_Ecto-sp13_S_contig63339.17079.1 vs. uniprot
Match: A0A024UG03_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UG03_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 8.400e-13
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK 126
             F ECWWDSL +DLLGAN +GM LG  TL++LET+ YDW+ K
Sbjct:  241 DFQECWWDSLFMDLLGANFVGMCLGSLTLKYLETKEYDWSGK 282
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BLAST of mRNA_Ecto-sp13_S_contig63339.17079.1 vs. uniprot
Match: A0A485KMU7_9STRA (Aste57867_9260 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMU7_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.570e-12
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK 126
             F ECWWDSL +DLLGAN LGM  G  TL++LET+ YDW+ K
Sbjct:  246 DFQECWWDSLFMDLLGANFLGMCAGSLTLKYLETKQYDWSGK 287
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BLAST of mRNA_Ecto-sp13_S_contig63339.17079.1 vs. uniprot
Match: A0A836CG66_9STRA (Phosphatidylserine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG66_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.580e-12
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDW 117
            QF ECWWDS+ ID  GAN++GM LGL TLRFLE + YDW
Sbjct:  252 QFRECWWDSVFIDFFGANLIGMGLGLATLRFLENQDYDW 290
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63339.17079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVK9_9PHAE1.450e-22100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V3X7_9STRA2.060e-1474.36Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A3R6YGB5_9STRA1.330e-1366.67Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6G0X7J1_9STRA1.760e-1366.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A397BVI2_9STRA2.930e-1366.67Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A418BL29_9STRA2.950e-1366.67Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A425DKC8_9STRA3.100e-1366.67Bromo domain-containing protein n=2 Tax=Aphanomyce... [more]
A0A024UG03_9STRA8.400e-1364.29Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
A0A485KMU7_9STRA1.570e-1264.29Aste57867_9260 protein n=1 Tax=Aphanomyces stellat... [more]
A0A836CG66_9STRA1.580e-1269.23Phosphatidylserine synthase n=1 Tax=Tribonema minu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63339contigEcto-sp13_S_contig63339:492..617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score96.7
Seed ortholog evalue2.8e-18
Seed eggNOG ortholog2880.D7FVQ2
Preferred namePTDSS1
Model size126
KEGG rclassRC00017,RC02950
KEGG koko:K08729,ko:K08730
KEGG ReactionR07376,R07377
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0019637,GO:0031984,GO:0042175,GO:0042398,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901564,GO:1901566,GO:1901576
Exons1
EggNOG free text desc.Phosphatidylserine synthase
EggNOG OGsKOG2735@1,KOG2735@2759
EC2.7.8.29
Cds size126
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463878.1068413-CDS-Ecto-sp13_S_contig63339:491..6171681463878.1068413-CDS-Ecto-sp13_S_contig63339:491..617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63339 492..617 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63339.17079.1prot_Ecto-sp13_S_contig63339.17079.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig63339 492..617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig63339.17079.1

>prot_Ecto-sp13_S_contig63339.17079.1 ID=prot_Ecto-sp13_S_contig63339.17079.1|Name=mRNA_Ecto-sp13_S_contig63339.17079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
QFHECWWDSLIIDLLGANVLGMTLGLYTLRFLETRTYDWNSK
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mRNA from alignment at Ecto-sp13_S_contig63339:492..617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig63339.17079.1 ID=mRNA_Ecto-sp13_S_contig63339.17079.1|Name=mRNA_Ecto-sp13_S_contig63339.17079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63339:492..617+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTCCACGAGTGCTGGTGGGACTCCCTGATCATCGACCTGCTGGGCGC
AAACGTTCTCGGCATGACCCTGGGGCTCTACACGCTCAGGTTCCTGGAAA
CGAGGACCTACGACTGGAACAGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63339:492..617+

>mRNA_Ecto-sp13_S_contig63339.17079.1 ID=mRNA_Ecto-sp13_S_contig63339.17079.1|Name=mRNA_Ecto-sp13_S_contig63339.17079.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63339:492..617+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTCCACGAGTGCTGGTGGGACTCCCTGATCATCGACCTGCTGGGCGC
AAACGTTCTCGGCATGACCCTGGGGCTCTACACGCTCAGGTTCCTGGAAA
CGAGGACCTACGACTGGAACAGCAAG
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