mRNA_Ecto-sp13_S_contig12.1708.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: D7G319_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G319_ECTSI) HSP 1 Score: 217 bits (553), Expect = 8.490e-71 Identity = 107/131 (81.68%), Postives = 115/131 (87.79%), Query Frame = 1
Query: 1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHTGEAGTRKYFEL 393
MCRVMGG LALL+EIEQNNLTWRSVEGG IQQAL+EPIEY+ +EKST VKEC VRDALA LVGGE EVETPAG IDVLS TEVIE+KY KQWK GLGQVLAYH F+P LAKRLHLFAH GE GT+KYF+L
Sbjct: 1 MCRVMGGDLALLKEIEQNNLTWRSVEGGPAIQQALIEPIEYQHVEKSTSVKECWVRDALASLVGGEPEVETPAGNIDVLSGTEVIEVKYYKQWKHGLGQVLAYHCFHPSLAKRLHLFAHAGEVGTQKYFDL 131
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: A0A6H5JJP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP2_9PHAE) HSP 1 Score: 179 bits (455), Expect = 8.480e-50 Identity = 90/131 (68.70%), Postives = 103/131 (78.63%), Query Frame = 1
Query: 1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHTGEAGTRKYFEL 393
+CRVMGG L+L R+IEQN L W VEGG IQQALL P++YKE + RV+EC+VRDALA LVGG EVETP+GYIDVLS TEVIE+KY +QWK GLGQVLAY P LA+RLHLFAHTG+ T KY EL
Sbjct: 233 ICRVMGGDLSLCRQIEQNALGWNCVEGGEAIQQALLRPVKYKENCVTERVRECVVRDALASLVGGTTEVETPSGYIDVLSETEVIEVKYYRQWKDGLGQVLAYQSHYPRLARRLHLFAHTGDRDTDKYCEL 363
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: D8LP52_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP52_ECTSI) HSP 1 Score: 153 bits (386), Expect = 1.210e-43 Identity = 81/130 (62.31%), Postives = 95/130 (73.08%), Query Frame = 1
Query: 1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHTGEAGTRKYFE 390
M RVMGG L LLR IE+NNL W SV+GG VIQ+AL+EPI++ E S RV+E VRDALAL+VGG+ E ETP G+IDVLS TEVIE+K+ WK GLGQVL+Y P L KRLHLFA G T +Y E
Sbjct: 2 MYRVMGGDLKLLRNIERNNLAWMSVQGGEVIQRALIEPIDHTEKYVSGRVREKSVRDALALIVGGKTEQETPVGFIDVLSDTEVIEVKHYTLWKHGLGQVLSYQRHYPHLDKRLHLFAQIGCKNTDQYLE 131
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: D8LFH9_ECTSI (FirrV-1-A34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH9_ECTSI) HSP 1 Score: 149 bits (377), Expect = 2.350e-43 Identity = 79/127 (62.20%), Postives = 94/127 (74.02%), Query Frame = 1
Query: 13 MGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHTGEAGTRKYFEL 393
M G L L R+IEQNNL SVEGG I+QALL+P+EY+E +STRVKE R+ALA L+GGE EVETP+G+ID S VIE+KY +WK GLGQVLAY P LA+RLHLFAH G+ T KYFE+
Sbjct: 1 MRGDLGLCRQIEQNNLVRGSVEGGEAIRQALLQPVEYREDGESTRVKESSAREALASLIGGEREVETPSGFIDKPSDA-VIEVKYHNRWKDGLGQVLAYQSHYPRLARRLHLFAHIGDKDTDKYFEM 126
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE) HSP 1 Score: 155 bits (391), Expect = 2.650e-41 Identity = 76/120 (63.33%), Postives = 93/120 (77.50%), Query Frame = 1
Query: 1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHT 360
+CRVMGG L+L R+IEQN L W V+GG IQQALL P++ E + RV+EC+VRDALA +VGG EVETP+GYIDVLS TEVIE+KY + WK+GLGQVL Y P L++RLHLFAH+
Sbjct: 667 ICRVMGGDLSLCRQIEQNALGWNCVDGGEAIQQALLRPVKNIEDCVTERVRECVVRDALAFVVGGTTEVETPSGYIDVLSETEVIEVKYYRNWKEGLGQVLPYQSHYPRLSRRLHLFAHS 786
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: A0A6H5L807_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L807_9PHAE) HSP 1 Score: 116 bits (290), Expect = 3.380e-28 Identity = 66/117 (56.41%), Postives = 79/117 (67.52%), Query Frame = 1
Query: 64 WRSV-EGGRVIQ-------QALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHTGEAGTRKYFE 390
W SV E GR ++ +AL +EYK + +VKE VRDALA +VGGE E ETP G+IDVLS TEVIE+KY KQW+ LGQVLAY + P LAKR+HLFA TG+ T KY E
Sbjct: 170 WESVGEEGRTVECISPRLMKALNRRVEYKP--ELFKVKESSVRDALASIVGGETEKETPVGFIDVLSDTEVIEVKYYKQWRGALGQVLAYQAYYPGLAKRVHLFAQTGKKDTEKYVE 284
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: A0A835Z393_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z393_9STRA) HSP 1 Score: 105 bits (263), Expect = 6.270e-27 Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 1
Query: 1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPI------EYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFA 354
+CR+MGG + ++ E+ + W+ R +QQALL P E+ +TR EC VRD LAL +GG E+ETPAG+ DV++AT VIE+K + WK LGQVLAYH F R+HLFA
Sbjct: 1 VCRLMGGDMRIIAEVVARHKWWQETAARREVQQALLAPPPAGRWDEFSGTSDTTR--ECDVRDDLALALGGSIEIETPAGFADVITATHVIEVKNWRNWKHALGQVLAYHAFASDKRMRIHLFA 122
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: B5LW94_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW94_9PHYC) HSP 1 Score: 108 bits (271), Expect = 1.180e-25 Identity = 55/118 (46.61%), Postives = 77/118 (65.25%), Query Frame = 1
Query: 1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFA 354
MCR++GG L L I +N L W S ++Q L+ P+E+ E+ K E ++RD LA +GG+ EV TP G IDVL++TEVIE+K+ + + G GQV+ Y ++PLL KRLHLFA
Sbjct: 239 MCRIIGGDLRLQATINKNYLEWTSAPELEKVRQDLIAPLEHFELYKKRSGHEAVIRDKLAESLGGKTEVRTPCGRIDVLTSTEVIEVKHYRMFLHGYGQVMGYGEYHPLLKKRLHLFA 356
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: A0A835YUG7_9STRA (FirrV-1-A34 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG7_9STRA) HSP 1 Score: 100 bits (249), Expect = 9.490e-25 Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 1
Query: 1 MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYK---------EIEKSTRVKECLVRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFA 354
+CR+MG + ++ E+E N W++ +QQALL + + +I + V+E VRD LAL + G E+ETPAG+ DV++ATEVI++K + WK LGQVLAYH F +KR+HLFA
Sbjct: 1 VCRLMGRDMKIIAEVEARNEWWQATPARSEVQQALLGALPARSWDEHSGTDDIARERSVREHDVRDDLALALDGSIEMETPAGFADVVTATEVIKVKAWRNWKHSLGQVLAYHAFMSDKSKRIHLFA 127
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Match: A0A6H5JDC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDC2_9PHAE) HSP 1 Score: 101 bits (252), Expect = 2.520e-23 Identity = 52/77 (67.53%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 163 VRDALALLVGGEAEVETPAGYIDVLSATEVIEIKYIKQWKQGLGQVLAYHLFNPLLAKRLHLFAHTGEAGTRKYFEL 393
+R A V G+ EVETP G IDVLS TEVIE+KY K+WK LGQVL YHLF P LAKRLHLFAH GEAGT F+L
Sbjct: 234 LRRKSAETVDGQTEVETPVGIIDVLSKTEVIEMKYNKKWKHALGQVLDYHLFYPRLAKRLHLFAHGGEAGTSMDFDL 310 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12.1708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12.1708.1 >prot_Ecto-sp13_S_contig12.1708.1 ID=prot_Ecto-sp13_S_contig12.1708.1|Name=mRNA_Ecto-sp13_S_contig12.1708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp MCRVMGGYLALLREIEQNNLTWRSVEGGRVIQQALLEPIEYKEIEKSTRVback to top mRNA from alignment at Ecto-sp13_S_contig12:45899..46291- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12.1708.1 ID=mRNA_Ecto-sp13_S_contig12.1708.1|Name=mRNA_Ecto-sp13_S_contig12.1708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12:45899..46291- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12:45899..46291- >mRNA_Ecto-sp13_S_contig12.1708.1 ID=mRNA_Ecto-sp13_S_contig12.1708.1|Name=mRNA_Ecto-sp13_S_contig12.1708.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12:45899..46291- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |