mRNA_Ecto-sp13_S_contig6330.17075.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6330.17075.1
Unique NamemRNA_Ecto-sp13_S_contig6330.17075.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6330.17075.1 vs. uniprot
Match: A0A6H5JIG6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG6_9PHAE)

HSP 1 Score: 1084 bits (2804), Expect = 0.000e+0
Identity = 578/652 (88.65%), Postives = 594/652 (91.10%), Query Frame = 1 
Query:    1 MALTEARRPPSLDLAAVNQGVIPNQEQRQDNEVIDLSCTTPPHEVSTATDFRDVKLQDFHIGDRLGATRDGGEGFQGVNSRVFRVRLRSRRHDHASRGRAHGANAHSSSVASPPQRSATTGPATKSAPGTETPSSTSSPSGSLVNDLMGMGEQLWKGSFGACLSGNYGGVKQGAANAKRSAVPDKAEDKPADTEWALKMVLTLADKDPLQAEREMKTEIDVLVGGRIPPHPNIMRGVHSFQDTIGRELQPRLWDGLGPNAGGTLSPHTTFVVMPLFTAGSLQALLNKRRLRCKGPPFLRLLETMRFLKQMLSAVSHLLAHGVAHNDIKPDNWLLCADQRTLVLTDFGACFDSSNPPQPRSAPSSSSPAVPTPCLGASAAVSAIDLEQTAVTGRDSNPRRSSGAVGSXXXXXXXXXXXXXXXXTSATPNGTDLSGAGAAEPSANAATGRKRPMKAVNFLPPRDFGSANRKHLGVTSMPSCDTGTHAGSVPGPQNSKRRRLDYGHQERDKGRICSTTGTVCSKTKVSDKMVIPFSNYCAAGAPNILAPELARAWEEETPLNFTRSDVFSVGLCMYRMLRPDSVVIDNGTGLEGKDPLEKTKGLTNQEAWPLPIFPEDKGGCPFEVSQLCRGLLLADPYKRLAASEGQSIASNYV 1956
            M L+ ARRPPSLDLAA NQGV PN+ QRQDNEVIDL+CTTPPHEVSTATDFRDVKLQDFHIGDRLGATRDGG+GFQGVNSRVFRVRLRSRRHDHASRGRA GANAH SSVASP   S               PSSTS PSGSLV DLMGM EQL KGSFGACLSGNYG V+QGAANAKRSAVPDKAEDKPADTEWALKMVLTLA KDPLQAEREMKTEIDVLVGGRIPPHPNIMRGVHSFQDTIGRELQPRLWDGL PNAGGTLSPHTTF+VMPLFTAGSLQALLNKRRLRCKGPPFLRLLETMRFLKQMLSA+SHLLAHGVAHNDIKPDNWLLCADQRTLVLTDFGACFDSSNPPQPRS PSSSSPAVP PCLGASAAVSA DLEQTAVTGR SNP RSSGAVGS  XXXXXXXXXXXXXX+    NGTDLSGAGAAEP ANA TGRKRPM+A NF+P RDFGSANRKHLGV+SMPSCDTGT+A SVPGPQ+SKRRRL Y  QERDK RICS TGTVCS T+VSDKMVIPFSNYC AGAPNILAPELARAWEEETPLNFTRSDVFSVGLCMYRMLRPDSV+IDNGTGLE KDPLEKTKGLTNQEAWPLPIFPE+KGGCPFEVSQLCRGLLLADP KRLAA EGQSIASNYV
Sbjct:    1 MELSAARRPPSLDLAAYNQGVTPNEAQRQDNEVIDLTCTTPPHEVSTATDFRDVKLQDFHIGDRLGATRDGGKGFQGVNSRVFRVRLRSRRHDHASRGRADGANAHPSSVASPSLPSXXXXXXXXXXXXXXXPSSTSPPSGSLVKDLMGMCEQLRKGSFGACLSGNYGSVEQGAANAKRSAVPDKAEDKPADTEWALKMVLTLAAKDPLQAEREMKTEIDVLVGGRIPPHPNIMRGVHSFQDTIGRELQPRLWDGLEPNAGGTLSPHTTFLVMPLFTAGSLQALLNKRRLRCKGPPFLRLLETMRFLKQMLSAISHLLAHGVAHNDIKPDNWLLCADQRTLVLTDFGACFDSSNPPQPRSKPSSSSPAVPVPCLGASAAVSATDLEQTAVTGRGSNPCRSSGAVGSTAXXXXXXXXXXXXXXS----NGTDLSGAGAAEPLANAVTGRKRPMEAGNFVPSRDFGSANRKHLGVSSMPSCDTGTNADSVPGPQDSKRRRLGYRDQERDKVRICSATGTVCSTTEVSDKMVIPFSNYCVAGAPNILAPELARAWEEETPLNFTRSDVFSVGLCMYRMLRPDSVIIDNGTGLEVKDPLEKTKGLTNQEAWPLPIFPENKGGCPFEVSQLCRGLLLADPCKRLAAFEGQSIASNYV 648
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BLAST of mRNA_Ecto-sp13_S_contig6330.17075.1 vs. uniprot
Match: D7G480_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G480_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 1.850e-117
Identity = 178/201 (88.56%), Postives = 184/201 (91.54%), Query Frame = 1 
Query: 1354 MKAVNFLPPRDFGSANRKHLGVTSMPSCDTGTHAGSVPGPQNSKRRRLDYGHQERDKGRICSTTGTVCSKTKVSDKMVIPFSNYCAAGAPNILAPELARAWEEETPLNFTRSDVFSVGLCMYRMLRPDSVVIDNGTGLEGKDPLEKTKGLTNQEAWPLPIFPEDKGGCPFEVSQLCRGLLLADPYKRLAASEGQSIASNYV 1956
            M+A NF+P RDFGSANRK LGVT MPSCDTGTHA SVPGPQ+SKR RL YG QERD GRI STTGTVCS  KVS +MVIPFSNYC AGAPN LAPELARAWEEETPLNF RSDVFSVGLCMYRMLRPDSV+IDNGTGLE KDPLEKTKGLTNQEAWPLPIFPE+KGGCPFEVSQLCRGLLLADPYKRLAASEGQSIASNYV
Sbjct:    1 MEAGNFVPRRDFGSANRKRLGVTGMPSCDTGTHADSVPGPQDSKRHRLGYGDQERDNGRIGSTTGTVCSTAKVSYEMVIPFSNYCVAGAPNTLAPELARAWEEETPLNFKRSDVFSVGLCMYRMLRPDSVIIDNGTGLEEKDPLEKTKGLTNQEAWPLPIFPENKGGCPFEVSQLCRGLLLADPYKRLAASEGQSIASNYV 201
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BLAST of mRNA_Ecto-sp13_S_contig6330.17075.1 vs. uniprot
Match: UPI0005EEFBBB (serine/threonine-protein kinase PINK1, mitochondrial n=1 Tax=Wasmannia auropunctata TaxID=64793 RepID=UPI0005EEFBBB)

HSP 1 Score: 67.4 bits (163), Expect = 5.530e-8
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1 
Query:  679 IPPHPNIMRGVHSFQDTIGRELQPRLWDGLGPNA-GGTLSPH------TTFVVMPLFTAGSLQALLNKRRLRCKGPPFLRLLETMRFLKQMLSAVSHLLAHGVAHNDIKPDNWLLCADQRT-----LVLTDFGACFDSSN 1062
            +PPHPNI+   + F D I   + P  W G+ P+A    ++PH      + F+VM  +     Q + N+          + +  ++  L Q+L AV+H+ A+G+AH D+K DN LL   + T     LV+TDFG C    N
Sbjct:  266 LPPHPNIVAMYYVFTDEI--PMLPGSW-GMYPDALPSRINPHGSGRNMSLFLVMKRYDTTLKQYITNRN---------IDMRVSILLLAQLLEAVAHMNANGIAHRDLKSDNILLDLSEETDNSPSLVVTDFGCCLADKN 393
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BLAST of mRNA_Ecto-sp13_S_contig6330.17075.1 vs. uniprot
Match: UPI0013F2B0FD (serine/threonine-protein kinase PINK1, mitochondrial n=1 Tax=Odontomachus brunneus TaxID=486640 RepID=UPI0013F2B0FD)

HSP 1 Score: 67.4 bits (163), Expect = 5.540e-8
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 1 
Query:  679 IPPHPNIMRGVHSFQDTIGRELQPRLWDGLGPNAGGT-LSPHTTFVVMPLFTAGSLQALLNKRRLRCKGPPFLRLLETMRFLKQMLSAVSHLLAHGVAHNDIKPDNWLLCADQRT-----LVLTDFGACFDSSN 1062
            +PPHPNI+   + F D I   + P  W G+ P+A  T ++PH +   M LF       +  K+ L  +      +  ++  L Q+L AV+H+ A+G+AH D+K DN LL   + T     LV+TDFG C    N
Sbjct:  266 LPPHPNIVAMYNVFADRI--PILPDSW-GMYPDALPTRINPHGSGRNMSLFLLMKRYDVTLKQYLESRSVDG-NMRVSILLLAQLLEAVAHMNANGIAHRDLKSDNILLDLSEETDNCPSLVVTDFGCCLADKN 395
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BLAST of mRNA_Ecto-sp13_S_contig6330.17075.1 vs. uniprot
Match: A0A0C9QG46_9HYME (Pink1_1 protein n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9QG46_9HYME)

HSP 1 Score: 64.3 bits (155), Expect = 3.180e-7
Identity = 45/138 (32.61%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:  679 IPPHPNIMRGVHSFQDTI-----GRELQP-RLWDGLGPNAGGTLSPHTTFVVMPLFTAGSLQALLNKRRLRCKGPPFLRLLETMRFLKQMLSAVSHLLAHGVAHNDIKPDNWLLCADQR----TLVLTDFGACFDSSN 1062
            +P HPNI+   + F D +      R + P  L   L P   G     + F++M  +     Q L  KR         + + E++  L Q+L AV+H+ AHG+AH D+K DN LL   +     +LV+TDFG C    N
Sbjct:   44 LPSHPNIVAMYYVFADRVPLLPGSRRMYPDALPARLNPEGSGR--NMSLFLLMKRYDVTLKQYLTTKREQN-----EMNIRESILLLAQLLEAVAHMNAHGIAHRDLKTDNILLDTSEEANCPSLVITDFGCCLADKN 174
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BLAST of mRNA_Ecto-sp13_S_contig6330.17075.1 vs. uniprot
Match: A0A0C9R6K9_9HYME (Pink1_0 protein n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9R6K9_9HYME)

HSP 1 Score: 64.3 bits (155), Expect = 5.100e-7
Identity = 45/138 (32.61%), Postives = 66/138 (47.83%), Query Frame = 1 
Query:  679 IPPHPNIMRGVHSFQDTI-----GRELQP-RLWDGLGPNAGGTLSPHTTFVVMPLFTAGSLQALLNKRRLRCKGPPFLRLLETMRFLKQMLSAVSHLLAHGVAHNDIKPDNWLLCADQR----TLVLTDFGACFDSSN 1062
            +P HPNI+   + F D +      R + P  L   L P   G     + F++M  +     Q L  KR         + + E++  L Q+L AV+H+ AHG+AH D+K DN LL   +     +LV+TDFG C    N
Sbjct:  265 LPSHPNIVAMYYVFADRVPLLPGSRRMYPDALPARLNPEGSGR--NMSLFLLMKRYDVTLKQYLTTKREQN-----EMNIRESILLLAQLLEAVAHMNAHGIAHRDLKTDNILLDTSEEANCPSLVITDFGCCLADKN 395
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BLAST of mRNA_Ecto-sp13_S_contig6330.17075.1 vs. uniprot
Match: UPI0010FB3DF5 (serine/threonine-protein kinase PINK1, mitochondrial n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB3DF5)

HSP 1 Score: 63.9 bits (154), Expect = 6.570e-7
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1 
Query:  679 IPPHPNIMRGVHSFQDTIGRELQPRLWDGLGPNAGGT-LSPH------TTFVVMPLFTAGSLQALLNKRRLRCKGPPFLRLLETMRFLKQMLSAVSHLLAHGVAHNDIKPDNWLLCADQRT-----LVLTDFGACFDSSN 1062
            +PPHPNI+   + F D I   + P  W G+ P+A  T ++PH      + F+VM  +     Q + N+          +    ++    Q+L AV+H+ A+GVAH D+K DN LL   + +     LV+TDFG C  + N
Sbjct:  268 LPPHPNIVAMHYIFADRI--PMLPGSW-GMYPDALPTRINPHGSGRNMSLFLVMKRYDVTLKQYMANRN---------VDTRVSILLFAQLLEAVAHMSANGVAHRDLKTDNILLDLSEESDNCPSLVVTDFGCCLANKN 395
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BLAST of mRNA_Ecto-sp13_S_contig6330.17075.1 vs. uniprot
Match: UPI00083C77C0 (serine/threonine-protein kinase PINK1, mitochondrial n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C77C0)

HSP 1 Score: 63.5 bits (153), Expect = 8.530e-7
Identity = 46/138 (33.33%), Postives = 69/138 (50.00%), Query Frame = 1 
Query:  679 IPPHPNIMRGVHSFQDTI-----GRELQP-----RLW-DGLGPNAGGTLSPHTTFVVMPLFTAGSLQALLNKRRLRCKGPPFLRLLETMRFLKQMLSAVSHLLAHGVAHNDIKPDNWLLCADQR---TLVLTDFGACF 1050
            +PPHPN++     F D +      R L P     R++ DG G N        + F++M  +   SLQ  ++        PP +R   ++  L Q+L  ++HL+AHG+AH D+K DN LL   +     LV+TDFG C 
Sbjct:  270 LPPHPNVVAMYSVFTDYVPELKGARGLYPAALPSRIYPDGEGRNM-------SLFLIMKRYNC-SLQDFVSS------SPPAMR--TSILLLAQLLEGIAHLVAHGIAHRDLKSDNLLLDTSESHAPILVITDFGCCL 391
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BLAST of mRNA_Ecto-sp13_S_contig6330.17075.1 vs. uniprot
Match: UPI000995D1EE (serine/threonine-protein kinase PINK1, mitochondrial n=1 Tax=Pseudomyrmex gracilis TaxID=219809 RepID=UPI000995D1EE)

HSP 1 Score: 59.7 bits (143), Expect = 1.410e-5
Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = 1 
Query:  679 IPPHPNIMRGVHSFQDTIGRELQPRLWDGLG--PNAGGT-LSPHTTFVVMPLFTAGSLQALLNKRRLRCKGPPFLRLLETMRFLKQMLSAVSHLLAHGVAHNDIKPDNWLLCADQRT-----LVLTDFGACF 1050
            +PPHPN++   + F D I     P L D LG  P+A    ++P  +   M LF       +  K  L  +    +    ++  L Q+L AV H+ A+G+AH D+K DN LL   + T     LV+TDFG C 
Sbjct:  276 LPPHPNVVAMYYVFADRI-----PALPDSLGIYPDALPVRINPEGSGRNMSLFLVMKRYDVTLKHYLASQN---INTRVSILLLAQLLEAVVHMNANGIAHRDLKSDNILLDLSEETDNCPSLVVTDFGCCL 399
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6330.17075.1 vs. uniprot
Match: A0A6I9VYJ9_9HYME (serine/threonine-protein kinase PINK1, mitochondrial n=1 Tax=Pogonomyrmex barbatus TaxID=144034 RepID=A0A6I9VYJ9_9HYME)

HSP 1 Score: 58.9 bits (141), Expect = 1.610e-5
Identity = 40/126 (31.75%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:  679 IPPHPNIMRGVHSFQDTIGRELQPRLWDGLGPNAGGTLSPHTTFVVMPLFTAGSLQALLNKRRLRCKGPPFLRLLETMRFLKQMLSAVSHLLAHGVAHNDIKPDNWLLCADQRT-----LVLTDFG 1041
            +PPHPNI+     F D I   + P  W          ++PH +   M LF      ++  K+ +  +    + +  ++  L Q+L AV+H+ A+G+AH D+K DN LL   + T     LV+TDFG
Sbjct:  267 LPPHPNIVAMYCVFADRI--PILPGSWRMYPDALPSRINPHGSGRNMSLFLVMKRYSMTLKQYITDRN---IDMRISILLLAQLLEAVAHMNANGIAHRDLKSDNILLDLSEETDNSPSLVVTDFG 387
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6330.17075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JIG6_9PHAE0.000e+088.65Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G480_ECTSI1.850e-11788.56Protein kinase domain-containing protein n=1 Tax=E... [more]
UPI0005EEFBBB5.530e-832.86serine/threonine-protein kinase PINK1, mitochondri... [more]
UPI0013F2B0FD5.540e-835.07serine/threonine-protein kinase PINK1, mitochondri... [more]
A0A0C9QG46_9HYME3.180e-732.61Pink1_1 protein n=1 Tax=Fopius arisanus TaxID=6483... [more]
A0A0C9R6K9_9HYME5.100e-732.61Pink1_0 protein n=1 Tax=Fopius arisanus TaxID=6483... [more]
UPI0010FB3DF56.570e-732.86serine/threonine-protein kinase PINK1, mitochondri... [more]
UPI00083C77C08.530e-733.33serine/threonine-protein kinase PINK1, mitochondri... [more]
UPI000995D1EE1.410e-534.09serine/threonine-protein kinase PINK1, mitochondri... [more]
A0A6I9VYJ9_9HYME1.610e-531.75serine/threonine-protein kinase PINK1, mitochondri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6330contigEcto-sp13_S_contig6330:3..5982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Stop0
Start1
Seed ortholog score67.4
Seed ortholog evalue2.8e-08
Seed eggNOG ortholog7460.GB43836-PA
Model size1956
KEGG koko:K05688
KEGG Pathwayko04137,ko05012,map04137,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000266,GO:0000422,GO:0001654,GO:0002082,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006140,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006914,GO:0006928,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009987,GO:0010623,GO:0010635,GO:0010637,GO:0010638,GO:0010639,GO:0010821,GO:0010822,GO:0010823,GO:0010941,GO:0010970,GO:0012501,GO:0016006,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019941,GO:0022411,GO:0022414,GO:0022603,GO:0023052,GO:0030154,GO:0030163,GO:0030382,GO:0030705,GO:0031323,GO:0032501,GO:0032502,GO:0033043,GO:0034643,GO:0035234,GO:0036211,GO:0042325,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043457,GO:0043467,GO:0043523,GO:0043524,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046907,GO:0047497,GO:0048070,GO:0048073,GO:0048075,GO:0048076,GO:0048078,GO:0048087,GO:0048285,GO:0048311,GO:0048312,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051174,GO:0051179,GO:0051234,GO:0051603,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051654,GO:0051656,GO:0060548,GO:0061726,GO:0061919,GO:0062012,GO:0065007,GO:0071704,GO:0071840,GO:0072384,GO:0080090,GO:0090140,GO:0090141,GO:0098916,GO:0099111,GO:0099536,GO:0099537,GO:0140096,GO:1900542,GO:1901214,GO:1901215,GO:1901564,GO:1901565,GO:1901575,GO:1902956,GO:1903008,GO:1903578,GO:1905446
Exons9
EggNOG free text desc.Protein tyrosine kinase
EggNOG OGs38HJB@33154,3BCTD@33208,3CYFJ@33213,3SIIT@50557,41U6M@6656,46GP9@7399,KOG4158@1,KOG4158@2759
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-02_001640.1
EC2.7.11.1
Cds size1956
COG Functional cat.T
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03029,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6330.17075.1prot_Ecto-sp13_S_contig6330.17075.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6330 3..5982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463877.7418091-CDS-Ecto-sp13_S_contig6330:2..921681463877.7418091-CDS-Ecto-sp13_S_contig6330:2..92Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6330 3..92 -
1681463877.7583337-CDS-Ecto-sp13_S_contig6330:580..6691681463877.7583337-CDS-Ecto-sp13_S_contig6330:580..669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6330 581..669 -
1681463877.7707095-CDS-Ecto-sp13_S_contig6330:1083..11681681463877.7707095-CDS-Ecto-sp13_S_contig6330:1083..1168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6330 1084..1168 -
1681463877.7832162-CDS-Ecto-sp13_S_contig6330:1555..22591681463877.7832162-CDS-Ecto-sp13_S_contig6330:1555..2259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6330 1556..2259 -
1681463877.795348-CDS-Ecto-sp13_S_contig6330:2512..26541681463877.795348-CDS-Ecto-sp13_S_contig6330:2512..2654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6330 2513..2654 -
1681463877.807331-CDS-Ecto-sp13_S_contig6330:3045..31681681463877.807331-CDS-Ecto-sp13_S_contig6330:3045..3168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6330 3046..3168 -
1681463877.818714-CDS-Ecto-sp13_S_contig6330:3308..34011681463877.818714-CDS-Ecto-sp13_S_contig6330:3308..3401Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6330 3309..3401 -
1681463877.8290746-CDS-Ecto-sp13_S_contig6330:3641..40431681463877.8290746-CDS-Ecto-sp13_S_contig6330:3641..4043Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6330 3642..4043 -
1681463877.839487-CDS-Ecto-sp13_S_contig6330:5754..59821681463877.839487-CDS-Ecto-sp13_S_contig6330:5754..5982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6330 5755..5982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6330.17075.1

>prot_Ecto-sp13_S_contig6330.17075.1 ID=prot_Ecto-sp13_S_contig6330.17075.1|Name=mRNA_Ecto-sp13_S_contig6330.17075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=652bp
MALTEARRPPSLDLAAVNQGVIPNQEQRQDNEVIDLSCTTPPHEVSTATD
FRDVKLQDFHIGDRLGATRDGGEGFQGVNSRVFRVRLRSRRHDHASRGRA
HGANAHSSSVASPPQRSATTGPATKSAPGTETPSSTSSPSGSLVNDLMGM
GEQLWKGSFGACLSGNYGGVKQGAANAKRSAVPDKAEDKPADTEWALKMV
LTLADKDPLQAEREMKTEIDVLVGGRIPPHPNIMRGVHSFQDTIGRELQP
RLWDGLGPNAGGTLSPHTTFVVMPLFTAGSLQALLNKRRLRCKGPPFLRL
LETMRFLKQMLSAVSHLLAHGVAHNDIKPDNWLLCADQRTLVLTDFGACF
DSSNPPQPRSAPSSSSPAVPTPCLGASAAVSAIDLEQTAVTGRDSNPRRS
SGAVGSSAAAAAAAAAAVAAAATSATPNGTDLSGAGAAEPSANAATGRKR
PMKAVNFLPPRDFGSANRKHLGVTSMPSCDTGTHAGSVPGPQNSKRRRLD
YGHQERDKGRICSTTGTVCSKTKVSDKMVIPFSNYCAAGAPNILAPELAR
AWEEETPLNFTRSDVFSVGLCMYRMLRPDSVVIDNGTGLEGKDPLEKTKG
LTNQEAWPLPIFPEDKGGCPFEVSQLCRGLLLADPYKRLAASEGQSIASN
YV
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mRNA from alignment at Ecto-sp13_S_contig6330:3..5982-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6330.17075.1 ID=mRNA_Ecto-sp13_S_contig6330.17075.1|Name=mRNA_Ecto-sp13_S_contig6330.17075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5980bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6330:3..5982- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTAACTGAAGCTCGAAGACCTCCATCGCTTGACTTAGCTGCTGT
TAACCAAGGTGTGATACCAAACCAAGAACAACGGCAGGACAACGAGGTGA
TCGACCTCAGTTGTACGACGCCGCCTCATGAAGTGTCAACTGCAACCGAT
TTCCGAGACGTCAAGCTCCAGGACTTCCACATAGGAGATCGGCTTGGAGC
GACGAGGGACGGTGGAGAGGGTTTTCAGGTCTGAGACATGTAATGTATCT
GTTGTTGGATTACTTTAGCGCCGATTGTTGTGCAGTCCAAGACACTAAAA
TACCACAGTTTGACGCCGTCGCATCTCGTGAGTCTCCAACAGCTGTAGAC
TTCACAAAAGTATGCATAGGCTCCTGTACCTTGTAGGTCCACCCGTTGCT
TACATAAGACATTACACTTTCATTCGATACCACAACCCCTTAGAAAACGT
ACACAATACCACACCCGTGTCCTGTTTTTTTTCAATGCCGAACAAAGTGT
TATTTTATTTCACTGTGTGTCATTTTATCACACTGTGACATGAGATACCA
CACCCTTTTAAAGTTGGGTCACAGATTATCGACGGAGCCCCCGCCTTTCA
CACGGTGTGACTACGCGAGGGCATGAGATCACGAGCAACAACCTACTCGC
AAAGGCCATGAAGACCAACAATGCCGTGGAGGGTGGTGCAGTTAGCAACC
CTGCTGAAAGCCCCGCGGCTCAGACTGCAGTGGGTAAGACTCCAGCGGAG
GCCCCACGCTCCATTGTAGTGTCCTTCTTTCAACCGGTTCGGGGGGACGT
GGGGCTGCTGAGACGACTCCCTCAGCAGCCGCGCATGACACCGCACGTAC
TGCTGAGGCCCGCCCAACAGAATCTACTGCTGAGACTCCCGCAGCACCCA
CACCCGCACCCGAAAAGGCAACTCTCCCACCAACCACCAACACCCTGAGC
GCGGCTACTGCTGAGAACCCTGCAGCACCGCGATGCGGAGAACCATCGTG
CACCAACAAGCCCCTGTCATCACACACCCTTTCCCCCCCCCCCCCTGTAA
GCCGGGTCCTATGAGCGCGCTACATCACACGGGCGACGGTATCACACCCC
ATTGTTATCACACCCGCTATTGGCGGGGCTCTATGAGTGCACTTAATCAC
ACTGATGACATAAGATAGCACACCCCCTATAGAATAGCACACCCGTGTTA
TAACTTTTGTCCCCCGGAACATGTTATCATACGGGTGTGGTATCTTATGC
AACCTACGGTACAGCAGTAGCCTCGACCACGCTGTGCTGTCATAGCGGCA
CGATGCACTGTAAGATGTGTACTTCGTCGTATTTGTAGTACTCCGACATT
CGTAATAGACACAATCCTGGTTCTGTTAGGTGTTGCTTCTTCAGAGATTG
GTGAATGCCTGGCCGATGGAGAAATAAAGAGCCTTTCGGTTCATTTTCCC
GCCAACATGTGCGAGGTGCCCACATCGTGTAGCTATGCAAGCGAGCTGCT
ACAATTATTATGGACTCAGTCCGCAAGGGCCCGGGATGTCACTACTGCTG
CACTGCTGTTGGTGTCTACTAGAATTTCGTACGTCCAACAGCGTCCAAAA
GCTTGTCAGAGAGAAGTCCACGCTGATTTCGCCAAATAAAACCGAAAATG
AACCTTGCACCTGCAACTGCTGGAACGGCATACGGACGTGGGCCCCGTGG
GGCCAGTCATGCATCTGGCCCACTCTTCCTTCCTTCACACTTACTTCGTG
GCGGCTTCAAGTGTTGGCGTGGCCCATGGCATGTATTCTAGTTCGCGGCG
TCTCTGCACTCAGCAGTTGGGCGTAACATGGCAAACACAGCTTTCTTTAT
GACCAGACTTGTGCTGCTCGTAGCATGTGCACATTGTGATCAAGCTTATT
CCGTACCCGCTCCCGTGTGCCACGCTACGTACCAACCAGGGGGTTAACTC
CCGCGTCTTCCGTGTAAGATTGCGTTCTCGGCGGCACGATCATGCGTCCA
GGGGTCGTGCCCACGGCGCCAATGCCCACTCATCTTCGGTTGCATCACCT
CCTCAGCGTTCGGCAACGACGGGTCCAGCCACGAAGAGTGCCCCCGGTAC
CGAGACACCAAGTTCGACTTCGTCTCCGAGCGGGAGCCTTGTGAACGACC
TCATGGGTATGGGCGAGCAGTTGTGGAAAGGGAGCTTTGGCGCTTGCCTT
AGTGGGAACTACGGCGGTGTCAAGCAGGGGGCCGCGAACGCGAAGAGATC
TGCTGTGCCAGACAAGGCCGAAGATAAGCCGGCAGATACGGAATGGGCGC
TTAAGATGGTGCTCACTTTAGCTGACAAAGACCCGTTGCAGGTGCGATGT
CCATAGCTAAGATGGAGCCCCATCCACAATATATATAGTTTCGCCACAGC
CTACATGTTATGTCCCTTGCTTTTTCAGAACAGCTTCCGGGTTGACATGC
AACAGTGCAGGACTTTCAACCCTACGGAGTGTTGCCTTCGTCTCGACAAC
GACGTTCCCAAAACTTGTACAGCTATTCAACATCAACAACCTCCTCCAAC
ACGCCCTTCTCGCCGGCGCCGACACGACCAGGCGGAGCGGGAGATGAAAA
CCGAGATCGATGTGCTCGTCGGTGGACGTATCCCTCCGCACCCTAACATC
ATGCGTGGCGTTCATAGCTTTCAGGTATGCCGGCTTGCGATTTCCTCGAC
TTTTCAAAGGCCAGACACATTATGGTGGTGACCGTTGTGAGATGGTCGAC
AATGCCATACCTCTGCTCAGACTCGATTGATAAATGGTCAACGGCGCATG
ATGTTGTTCTCTAGGATACCATTGGGCGTGAGCTTCAACCAAGACTCTGG
GATGGGCTTGGACCTAACGCCGGTGGGACGCTGAGCCCTCACACCACTTT
CGTGGTGATGCCCTTGTTCACGGCGGGATCTCTTCAGGTATTTGAAACAT
GCGCAGCGACCAATAATTCTGCGTGGGGGATCGGCAAGAAGTGCAGTACA
ATGCCGCGTGGAATATGCGTGATTGCTTGATTTTACAATCACAAGACTCA
TGAGAGCGTTGGGGATGGTGCAAGGTTGCACGCAAAGATCTTGAATCAGG
TGAAAGCGTAAATATTTAGTACATATCGGGTCGTGCTTGCGATGGGTTGA
AAAATTGCACCCGCTAAGTCAACGCGCACGAGGTGACTAAAATTTCCTTC
TTAGAATATTCTGAAGAAGTTGCCCCCGTGCCGGTAGACACCACGTCAAG
TGTTGCTTTCTTGCTGCCCATGAGTCCCAGCTTGGTAGTATCTCATCCAC
ATCCTCTGAACACGTGCCGTCCACACAGGCTTTACTGAACAAAAGGCGTC
TACGATGCAAGGGTCCGCCGTTCTTGAGACTCTTAGAAACGATGCGATTT
CTCAAGCAGATGCTCAGCGCGGTTAGCCATCTTCTTGCTCATGGGGTCGC
GCACAACGACATTAAACCAGGTGATGCATGTTTAACAATTCGTGTGAGTA
ACGGCGATGTTGACGTGTCTACCAGTGAATTTCTGCTCCGCACGTGGATT
CCTGCACGTACCTCCGCGTTGGCTTCACAACGTTGACCCATCGCATGTCT
GTGCTAGTGTTGAGACTCCTCGCCGCCTCTCGAATGCTTGCGCCGCCAGC
GCCCACCGGCGATGCATGATGAGCGCCGCCAAACACGTGCCTTTGGATGA
CGCTGGGACTCTTTTTTTCGCAGACAACTGGCTTCTTTGCGCCGACCAGC
GCACCCTCGTGCTCACCGACTTCGGCGCTTGCTTCGACTCCTCAAATCCG
CCGCAACCTCGGAGCGCGCCGTCGTCTTCTTCGCCGGCGGTGCCGACTCC
TTGCTTGGGCGCGTCAGCCGCAGTTTCCGCCATCGACCTGGAGCAAACCG
CAGTCACAGGCCGTGATTCGAACCCTCGCCGTTCCTCGGGCGCAGTAGGC
TCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCGCAGCTGCTGC
TACTAGTGCTACTCCCAACGGTACTGATCTATCGGGTGCTGGTGCTGCCG
AGCCGTCAGCGAACGCGGCAACGGGGAGAAAGAGGCCCATGAAAGCAGTA
AATTTTCTACCGCCCAGAGATTTTGGTTCCGCGAACAGGAAGCACTTGGG
TGTAACGAGCATGCCATCGTGTGATACAGGAACTCACGCTGGTAGTGTGC
CTGGACCGCAAAACAGCAAGAGACGCCGGCTTGACTACGGTCATCAAGAG
AGGGACAAGGGGCGCATATGTTCGACGACGGGTACGGTGTGCTCGAAGAC
GAAAGTCTCCGACAAGATGGTGATCCCATTCAGCAATTACTGTGCGGCAG
GGGCTCCGAACATACTCGCTCCCGAGCTGGCGCGAGCGTGGGAGGAAGAA
ACACCTCTGAACTTCACGCGAAGTGATGTAAGTCTGCCGTTTGTCTCCCA
TCCTTCAGGTCGAGCCTAGGCACGACATCTAGCGCATGCTCACGATTTTC
CCATTACGTTCACTGGGTTGAAATGCTCCATGGTTTTGTATGCAAGCGGA
ACAGCGGGTGCTCCAGATTCCCGACGAGATAGGGGAGAGCCATTGCCGTT
GTATGCATCAATTGCTTATCGGAATTGGTAAGGTGGCTATCTTGTCCGAA
ATCGGAAGCAATGGGGCAGGTTTCACGGCCGACTTCTCGGCAACAGCGCC
TTTCAAGCTCCTGGAGGTTGTTCCGTCACAATGCTGCTGCCATTAAATCC
GGTACGGTATTCGTTTCTTTCGGTCCTAACGTTCTGTTGCCAATGGTTTG
CTATGGCCCATCAGGTGTTTTCCGTGGGCTTATGCATGTATCGGATGCTG
CGTCCTGACTCGGTTGTCATCGACAACGGGACAGGGCTGGAGGGAAAAGG
TGTGATCACCGTCACGTCATTGTTGTACCTTCCATTTTCCTCGCCTACTT
TTGCGTTGTCGGTAGGACATGCGTTTCTAGTCTACCGATGTAGAGACAGC
AACAAGATTTCTCGAGGATACACGAGATTTCCGCAGTTCTCACTCCTCAG
TCTATGAACGCACGCATGCCCTCGCCCGTTGACGACGAGGATGGTGAAAT
CCACTGACCACCGCCGCGGTATTTTGTGTGCCCCAAAGCTTGATACGTCG
TTGAAACACGTCTGCAGGAACTTTGCTTTCCTTGAGTGCGTAACCGTAAT
TCGTGTGTGTTCGTGTCGTACGTTTCGCCAACCGTGATCGCTTTGAAATT
TGGCCCCTTCAAAAATGTCACACACGTCACATCGGCGTACTTGGCTGTGT
CCGGCTGAGGCAGACCCCTTGGAGAAGACCAAAGGGCTAACAAATCAGGA
AGCCTGGCCGCTGCCAATATTCCCGGAGGACAAAGGAGGCTGCCCGTTCG
AGGTACATGTTGAAATTGGTTCCGCGTTGACAAAATAAGCCATCTGCTGT
AAAAGGGGGCTTGTCGCTCCTGGCGTAAAAGTTTTAGGTATCTGGTTGCA
TTTTTTCCTGCGCGTGGGTCAGCGGGGTCGATCAATACCGCTCAGCGACA
TGACCGCGGCATGTTGTAGGACATTGTGATTTATGAGGCACAAACGTTTA
TTTGCGGGAGTGCAAGTTTGCAGTTCATGGTGTATACTTGTGCTCGAGAG
AGATCTACCATGCCCATTCTGTGACAACAAGCACATGGTGCTCCGTTTTT
GCTTTTCATTGAACATGGATTTGGCACGAGATAAGAGTGCTTTAGAGGAA
AAGGAGAGATTACGCCTGGGCGAACCTTGGGCTCCCACACCGCTGAATCA
TTGTGTTGTCGTAGCATTAATTCCGTTTAACTTATTCGTCATATCCTCCA
CTTTCCCGTATTTGTCTTGGGTCGCACAATATCGCCGCAGGTTTCGCAAC
TGTGCCGTGGACTCCTGCTAGCTGATCCATATAAACGGCTTGCAGCTTCC
GAAGGGCAATCTATTGCTTCCAATTATGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6330:3..5982-

>mRNA_Ecto-sp13_S_contig6330.17075.1 ID=mRNA_Ecto-sp13_S_contig6330.17075.1|Name=mRNA_Ecto-sp13_S_contig6330.17075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1956bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6330:3..5982- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTAACTGAAGCTCGAAGACCTCCATCGCTTGACTTAGCTGCTGT
TAACCAAGGTGTGATACCAAACCAAGAACAACGGCAGGACAACGAGGTGA
TCGACCTCAGTTGTACGACGCCGCCTCATGAAGTGTCAACTGCAACCGAT
TTCCGAGACGTCAAGCTCCAGGACTTCCACATAGGAGATCGGCTTGGAGC
GACGAGGGACGGTGGAGAGGGTTTTCAGGGGGTTAACTCCCGCGTCTTCC
GTGTAAGATTGCGTTCTCGGCGGCACGATCATGCGTCCAGGGGTCGTGCC
CACGGCGCCAATGCCCACTCATCTTCGGTTGCATCACCTCCTCAGCGTTC
GGCAACGACGGGTCCAGCCACGAAGAGTGCCCCCGGTACCGAGACACCAA
GTTCGACTTCGTCTCCGAGCGGGAGCCTTGTGAACGACCTCATGGGTATG
GGCGAGCAGTTGTGGAAAGGGAGCTTTGGCGCTTGCCTTAGTGGGAACTA
CGGCGGTGTCAAGCAGGGGGCCGCGAACGCGAAGAGATCTGCTGTGCCAG
ACAAGGCCGAAGATAAGCCGGCAGATACGGAATGGGCGCTTAAGATGGTG
CTCACTTTAGCTGACAAAGACCCGTTGCAGGCGGAGCGGGAGATGAAAAC
CGAGATCGATGTGCTCGTCGGTGGACGTATCCCTCCGCACCCTAACATCA
TGCGTGGCGTTCATAGCTTTCAGGATACCATTGGGCGTGAGCTTCAACCA
AGACTCTGGGATGGGCTTGGACCTAACGCCGGTGGGACGCTGAGCCCTCA
CACCACTTTCGTGGTGATGCCCTTGTTCACGGCGGGATCTCTTCAGGCTT
TACTGAACAAAAGGCGTCTACGATGCAAGGGTCCGCCGTTCTTGAGACTC
TTAGAAACGATGCGATTTCTCAAGCAGATGCTCAGCGCGGTTAGCCATCT
TCTTGCTCATGGGGTCGCGCACAACGACATTAAACCAGACAACTGGCTTC
TTTGCGCCGACCAGCGCACCCTCGTGCTCACCGACTTCGGCGCTTGCTTC
GACTCCTCAAATCCGCCGCAACCTCGGAGCGCGCCGTCGTCTTCTTCGCC
GGCGGTGCCGACTCCTTGCTTGGGCGCGTCAGCCGCAGTTTCCGCCATCG
ACCTGGAGCAAACCGCAGTCACAGGCCGTGATTCGAACCCTCGCCGTTCC
TCGGGCGCAGTAGGCTCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGTCGCAGCTGCTGCTACTAGTGCTACTCCCAACGGTACTGATCTATCGG
GTGCTGGTGCTGCCGAGCCGTCAGCGAACGCGGCAACGGGGAGAAAGAGG
CCCATGAAAGCAGTAAATTTTCTACCGCCCAGAGATTTTGGTTCCGCGAA
CAGGAAGCACTTGGGTGTAACGAGCATGCCATCGTGTGATACAGGAACTC
ACGCTGGTAGTGTGCCTGGACCGCAAAACAGCAAGAGACGCCGGCTTGAC
TACGGTCATCAAGAGAGGGACAAGGGGCGCATATGTTCGACGACGGGTAC
GGTGTGCTCGAAGACGAAAGTCTCCGACAAGATGGTGATCCCATTCAGCA
ATTACTGTGCGGCAGGGGCTCCGAACATACTCGCTCCCGAGCTGGCGCGA
GCGTGGGAGGAAGAAACACCTCTGAACTTCACGCGAAGTGATGTGTTTTC
CGTGGGCTTATGCATGTATCGGATGCTGCGTCCTGACTCGGTTGTCATCG
ACAACGGGACAGGGCTGGAGGGAAAAGACCCCTTGGAGAAGACCAAAGGG
CTAACAAATCAGGAAGCCTGGCCGCTGCCAATATTCCCGGAGGACAAAGG
AGGCTGCCCGTTCGAGGTTTCGCAACTGTGCCGTGGACTCCTGCTAGCTG
ATCCATATAAACGGCTTGCAGCTTCCGAAGGGCAATCTATTGCTTCCAAT
TATGTC
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