mRNA_Ecto-sp13_S_contig6326.17071.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6326.17071.1
Unique NamemRNA_Ecto-sp13_S_contig6326.17071.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6326.17071.1 vs. uniprot
Match: A0A6H5JLL3_9PHAE (Ste20-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL3_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 9.500e-80
Identity = 124/143 (86.71%), Postives = 128/143 (89.51%), Query Frame = 1 
Query:    1 RQVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEVMKHSPFCWFRLSEEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 429
            ++VAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKE             +EE IAY+LKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYG RRNVAKTFVGTPCWMAPEVMEQV
Sbjct:   79 QEVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEGKGDG-------MKEECIAYVLKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGARRNVAKTFVGTPCWMAPEVMEQV 214
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BLAST of mRNA_Ecto-sp13_S_contig6326.17071.1 vs. uniprot
Match: A0A835Z4G7_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G7_9STRA)

HSP 1 Score: 210 bits (534), Expect = 7.250e-64
Identity = 98/143 (68.53%), Postives = 115/143 (80.42%), Query Frame = 1 
Query:    1 RQVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEVMKHSPFCWFRLSEEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 429
            ++V VMR+CDHPNV+ CY SFVH N+LWLVME + KGSC HVM+V+K+              +E+WIAYIL++TL GL+YFH  GQIHRDIKAGNILL  DGRV+LADFGVAGWL+GYGNRR+  KTFVGTPCWMAPEVMEQV
Sbjct:   68 QEVNVMRLCDHPNVVRCYCSFVHGNQLWLVMELLDKGSCFHVMSVSKRMGNAGG-------MKEDWIAYILRETLCGLQYFHQNGQIHRDIKAGNILLSSDGRVQLADFGVAGWLIGYGNRRSTTKTFVGTPCWMAPEVMEQV 203
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BLAST of mRNA_Ecto-sp13_S_contig6326.17071.1 vs. uniprot
Match: A0A4D9D9M6_9STRA (Protein kinase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9M6_9STRA)

HSP 1 Score: 202 bits (515), Expect = 6.850e-61
Identity = 94/143 (65.73%), Postives = 112/143 (78.32%), Query Frame = 1 
Query:    1 RQVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEVMKHSPFCWFRLSEEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 429
            ++V +MRM DHPN+L CY SFVHE +LWLVM+ M KGSCLHVM  AK+  M            EEW+AYIL+++LQGLKYFHDQGQIHRD+KAGNILL  +G V+LADFGV+GWL+  G+RR   KTFVGTPCWMAPEVMEQ+
Sbjct:   60 QEVQMMRMSDHPNILRCYCSFVHECQLWLVMQMMEKGSCLHVMTQAKRMGMGEG-------MREEWLAYILRESLQGLKYFHDQGQIHRDVKAGNILLDGEGHVRLADFGVSGWLINSGDRRQTTKTFVGTPCWMAPEVMEQI 195
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BLAST of mRNA_Ecto-sp13_S_contig6326.17071.1 vs. uniprot
Match: A0A067CRE8_SAPPC (STE/STE20/FRAY protein kinase n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CRE8_SAPPC)

HSP 1 Score: 184 bits (466), Expect = 2.430e-54
Identity = 87/142 (61.27%), Postives = 110/142 (77.46%), Query Frame = 1 
Query:    4 QVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEVMKHSPFCWFRLSEEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 429
            +V  M+M +HPNVL+CY SFVH+++LWLVM+ M+KGSCLH MN  KK+ +           +EE +A ILK+TLQGL+YFH+ GQIHRDIKAGNILL  +G V +ADFGV+GW++  G+RR   +TFVGTPCWMAPEVMEQV
Sbjct:   63 EVQTMKMTNHPNVLNCYCSFVHKDQLWLVMQLMNKGSCLHAMNQLKKKSLGEG-------MKEELLAVILKETLQGLQYFHENGQIHRDIKAGNILLDSNGHVLIADFGVSGWMMEGGDRRKNRQTFVGTPCWMAPEVMEQV 197
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BLAST of mRNA_Ecto-sp13_S_contig6326.17071.1 vs. uniprot
Match: A0A7S2XYH4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYH4_9STRA)

HSP 1 Score: 184 bits (466), Expect = 6.620e-54
Identity = 86/142 (60.56%), Postives = 105/142 (73.94%), Query Frame = 1 
Query:    1 RQVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEVMKHSPFCWFRLSEEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQ 426
            ++V  MR+ +H NVL C  SFV   +LWLVM+FM +GSCLHV+  ++K           R  +EEW+AY+LKQTLQGL+YFH  GQ+HRD+KAGNILL   G V+LADFGVAGWL+ YG R +  KTFVGTPCWMAPEVMEQ
Sbjct:   60 QEVQTMRLAEHENVLKCQCSFVEGQQLWLVMDFMDQGSCLHVLTQSEKHGFG-------RGMKEEWLAYVLKQTLQGLEYFHRSGQVHRDVKAGNILLSSTGDVRLADFGVAGWLIRYGERHSTKKTFVGTPCWMAPEVMEQ 194
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BLAST of mRNA_Ecto-sp13_S_contig6326.17071.1 vs. uniprot
Match: A0A6G0X975_9STRA (Protein kinase domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0X975_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.040e-53
Identity = 86/142 (60.56%), Postives = 109/142 (76.76%), Query Frame = 1 
Query:    4 QVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEVMKHSPFCWFRLSEEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 429
            +V  M+M +HPNVL CY SFVH+++LWLVM+ M+KGSCLH MN+ KK+ +           +EE  A IL++TLQGL+YFH+ GQIHRDIKAGNILL  +G V +ADFGV+GW++  G+RR   +TFVGTPCWMAPEVMEQV
Sbjct:   64 EVQTMKMTNHPNVLKCYCSFVHKDQLWLVMQLMNKGSCLHAMNILKKKGLGEG-------MKEELCAVILRETLQGLQYFHENGQIHRDIKAGNILLDGEGNVLIADFGVSGWMMEGGDRRKNRQTFVGTPCWMAPEVMEQV 198
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BLAST of mRNA_Ecto-sp13_S_contig6326.17071.1 vs. uniprot
Match: A0A1V9ZI16_9STRA (Kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZI16_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.120e-53
Identity = 87/142 (61.27%), Postives = 109/142 (76.76%), Query Frame = 1 
Query:    4 QVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEVMKHSPFCWFRLSEEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 429
            +V  M+M +HPNVL+CY SFVH+++LWLVM+ M+KGSCLH MN  KK+ +           +EE  A ILK+TLQGL+YFH+ GQIHRDIKAGNILL  +G V +ADFGV+GW++  G+RR   +TFVGTPCWMAPEVMEQV
Sbjct:   72 EVQTMKMTNHPNVLNCYCSFVHKDQLWLVMKLMNKGSCLHAMNQLKKKSLGEG-------MKEELCAIILKETLQGLQYFHENGQIHRDIKAGNILLDSNGHVLIADFGVSGWMMEGGDRRKNRQTFVGTPCWMAPEVMEQV 206
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BLAST of mRNA_Ecto-sp13_S_contig6326.17071.1 vs. uniprot
Match: A0A662WTR8_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTR8_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.070e-53
Identity = 83/142 (58.45%), Postives = 110/142 (77.46%), Query Frame = 1 
Query:    4 QVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEVMKHSPFCWFRLSEEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 429
            +V  M+M +HPNVL CY SFVH+++LWLV + M+KGSCLHVMN+ KK+ +           +EE++A +L ++L+GL+YFH+ GQIHRDIKAGNILL  +G V +ADFGV+GW++  G+RR   +TFVGTPCWMAPEVMEQV
Sbjct:   99 EVQTMKMTNHPNVLKCYCSFVHKDQLWLVTQLMNKGSCLHVMNLLKKKGLGEG-------LKEEFVAVVLNESLKGLQYFHENGQIHRDIKAGNILLDSEGHVVIADFGVSGWMMEGGDRRKNRQTFVGTPCWMAPEVMEQV 233
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BLAST of mRNA_Ecto-sp13_S_contig6326.17071.1 vs. uniprot
Match: A0A8K1CM74_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CM74_PYTOL)

HSP 1 Score: 181 bits (460), Expect = 2.280e-53
Identity = 86/142 (60.56%), Postives = 110/142 (77.46%), Query Frame = 1 
Query:    4 QVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEVMKHSPFCWFRLSEEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 429
            +V  M+M +HPNVL CY SFVH+++LWLVM+ M+KGSCLHV+N+ KK+ M           +EE+IA IL + L+GL+YFH+ GQIHRDIKAGNILL  +G V +ADFGV+GW++  G+RR   +TFVGTPCWMAPEVMEQV
Sbjct:   58 EVQTMKMTNHPNVLKCYCSFVHKDQLWLVMQLMNKGSCLHVINLLKKKSMGEG-------LKEEFIAVILNEALKGLQYFHENGQIHRDIKAGNILLDGEGHVVIADFGVSGWMMEGGDRRKNRQTFVGTPCWMAPEVMEQV 192
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BLAST of mRNA_Ecto-sp13_S_contig6326.17071.1 vs. uniprot
Match: H3HC15_PHYRM (Protein kinase domain-containing protein n=25 Tax=Oomycota TaxID=4762 RepID=H3HC15_PHYRM)

HSP 1 Score: 181 bits (459), Expect = 2.920e-53
Identity = 85/142 (59.86%), Postives = 110/142 (77.46%), Query Frame = 1 
Query:    4 QVAVMRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEVMKHSPFCWFRLSEEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVKLADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQV 429
            +V  M+M +HPNVL CY SFVH+++LWLV + M+KGSCLHVMN+ KK+ +           +EE++A IL +TL+GL+YFH+ GQIHRDIKAGNILL  +G V +ADFGV+GW++  G+RR   +TFVGTPCWMAPEVMEQV
Sbjct:   58 EVQTMKMTNHPNVLKCYCSFVHKDQLWLVTQLMNKGSCLHVMNLLKKKGLGEG-------LKEEFVAVILHETLKGLQYFHENGQIHRDIKAGNILLDSEGHVVIADFGVSGWMMEGGDRRKNRQTFVGTPCWMAPEVMEQV 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6326.17071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLL3_9PHAE9.500e-8086.71Ste20-like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A835Z4G7_9STRA7.250e-6468.53Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A4D9D9M6_9STRA6.850e-6165.73Protein kinase domain-containing protein n=2 Tax=M... [more]
A0A067CRE8_SAPPC2.430e-5461.27STE/STE20/FRAY protein kinase n=4 Tax=Saprolegniac... [more]
A0A7S2XYH4_9STRA6.620e-5460.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6G0X975_9STRA1.040e-5360.56Protein kinase domain-containing protein n=2 Tax=A... [more]
A0A1V9ZI16_9STRA1.120e-5361.27Kinase n=1 Tax=Thraustotheca clavata TaxID=74557 R... [more]
A0A662WTR8_9STRA2.070e-5358.45Protein kinase domain-containing protein n=2 Tax=N... [more]
A0A8K1CM74_PYTOL2.280e-5360.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3HC15_PHYRM2.920e-5359.86Protein kinase domain-containing protein n=25 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6326contigEcto-sp13_S_contig6326:6638..7523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score184.1
Seed ortholog evalue4.4e-44
Seed eggNOG ortholog112098.XP_008611360.1
Preferred nameSTK39
Model size435
KEGG koko:K08835
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000187,GO:0000287,GO:0001885,GO:0001894,GO:0001932,GO:0001933,GO:0001934,GO:0002009,GO:0002028,GO:0002064,GO:0003008,GO:0003013,GO:0003158,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006971,GO:0006972,GO:0006979,GO:0007154,GO:0007165,GO:0007272,GO:0007275,GO:0007346,GO:0007399,GO:0007422,GO:0007444,GO:0008015,GO:0008065,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008217,GO:0008362,GO:0008366,GO:0009628,GO:0009651,GO:0009653,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0010766,GO:0010941,GO:0010959,GO:0016020,GO:0016301,GO:0016310,GO:0016323,GO:0016324,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019898,GO:0019899,GO:0019900,GO:0019901,GO:0022898,GO:0023014,GO:0023016,GO:0023051,GO:0023052,GO:0023056,GO:0030104,GO:0030154,GO:0030554,GO:0030855,GO:0031098,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031399,GO:0031400,GO:0031401,GO:0031974,GO:0031981,GO:0032101,GO:0032147,GO:0032268,GO:0032269,GO:0032270,GO:0032409,GO:0032410,GO:0032411,GO:0032412,GO:0032413,GO:0032414,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032890,GO:0032891,GO:0033036,GO:0033554,GO:0033674,GO:0034613,GO:0034762,GO:0034763,GO:0034764,GO:0034765,GO:0034766,GO:0034767,GO:0035220,GO:0035239,GO:0035295,GO:0035556,GO:0035639,GO:0036003,GO:0036094,GO:0036211,GO:0036251,GO:0036438,GO:0040003,GO:0042325,GO:0042326,GO:0042327,GO:0042335,GO:0042538,GO:0042592,GO:0042802,GO:0042981,GO:0043067,GO:0043085,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043266,GO:0043267,GO:0043268,GO:0043269,GO:0043270,GO:0043271,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043549,GO:0043618,GO:0043620,GO:0044057,GO:0044058,GO:0044070,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0045446,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045936,GO:0045937,GO:0045944,GO:0046777,GO:0046872,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050727,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050878,GO:0050891,GO:0050896,GO:0051046,GO:0051048,GO:0051049,GO:0051050,GO:0051051,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051641,GO:0051716,GO:0051726,GO:0051952,GO:0051953,GO:0051955,GO:0051956,GO:0060249,GO:0060255,GO:0060429,GO:0060457,GO:0060562,GO:0061392,GO:0061393,GO:0061404,GO:0061416,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071214,GO:0071470,GO:0071472,GO:0071474,GO:0071475,GO:0071476,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0072697,GO:0080090,GO:0080134,GO:0090186,GO:0090188,GO:0097159,GO:0097367,GO:0098590,GO:0104004,GO:0140096,GO:1901016,GO:1901017,GO:1901265,GO:1901363,GO:1901379,GO:1901380,GO:1901564,GO:1902305,GO:1902306,GO:1902531,GO:1902533,GO:1902680,GO:1903506,GO:1903508,GO:1903789,GO:1903792,GO:1903959,GO:1903960,GO:1904062,GO:1904063,GO:1905407,GO:1905408,GO:1990778,GO:2000112,GO:2000649,GO:2000650,GO:2001023,GO:2001024,GO:2001141
Exons3
EggNOG free text desc.stress-activated protein kinase signaling cascade
EggNOG OGsKOG0582@1,KOG0582@2759
EC2.7.11.1
Cds size420
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463877.360637-CDS-Ecto-sp13_S_contig6326:6637..68141681463877.360637-CDS-Ecto-sp13_S_contig6326:6637..6814Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6326 6638..6814 -
1681463877.3753452-CDS-Ecto-sp13_S_contig6326:6984..70531681463877.3753452-CDS-Ecto-sp13_S_contig6326:6984..7053Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6326 6985..7053 -
1681463877.3860703-CDS-Ecto-sp13_S_contig6326:7334..75081681463877.3860703-CDS-Ecto-sp13_S_contig6326:7334..7508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6326 7335..7508 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463877.4078977-UTR-Ecto-sp13_S_contig6326:7508..75231681463877.4078977-UTR-Ecto-sp13_S_contig6326:7508..7523Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6326 7509..7523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6326.17071.1prot_Ecto-sp13_S_contig6326.17071.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6326 6638..7508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6326.17071.1

>prot_Ecto-sp13_S_contig6326.17071.1 ID=prot_Ecto-sp13_S_contig6326.17071.1|Name=mRNA_Ecto-sp13_S_contig6326.17071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MRMCDHPNVLSCYASFVHENELWLVMEFMSKGSCLHVMNVAKKEVMKHSP
FCWFRLSEEEWIAYILKQTLQGLKYFHDQGQIHRDIKAGNILLGEDGRVK
LADFGVAGWLVGYGNRRNVAKTFVGTPCWMAPEVMEQVST
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mRNA from alignment at Ecto-sp13_S_contig6326:6638..7523-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6326.17071.1 ID=mRNA_Ecto-sp13_S_contig6326.17071.1|Name=mRNA_Ecto-sp13_S_contig6326.17071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=886bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6326:6638..7523- (Ectocarpus species13 EcNAP12_S_4_19m)
CGACAGGTGGCGGTGATGCGTATGTGCGATCACCCGAATGTTCTGAGCTG
CTACGCTTCGTTCGTGCATGAAAATGAGCTGTGGCTGGTCATGGAGTTCA
TGAGCAAAGGGTCGTGTCTGCACGTGATGAACGTCGCCAAGAAGGAGGTG
ATGAAGCACAGCCCGTTTTGCTGGTTTCGACTTTCGGAGGTTTTTAGGTC
TTTACGCACCAAGGAGGCACCAGCATAGGGTCATAAAGCGATGTGAGAGG
AAAAGTACGGTTCTGCAGAAGCCTAGTTGCATGCGTCGAACGTATCGGTA
AAGTAGCACGTGCAATTCAGTTGTGTTGTCCTTACTTGCGGTGCTATTTA
GTGTTTTTCATGCATGAAGTTCCCCATGATGCTCGACTACACGCACGGGG
ACGATAATCCTTTCGTGCCCCCGCCCCCTATCTGGTGTTACCTCGGAAGG
GTAAGGGGGAAGGCATGAAGGAGGAGTGGATCGCGTACATCTTGAAACAG
ACTCTTCAAGGCCTTAAGTACTTCCACGACCAGGGGCAGGTAAGCCATTG
CCATCGGACATCTTCGCTCAGTTGTTTCACTCAAGTGGAATAAGTTGCAG
GCCCATCAAAGGTGTTGTTTTCCCCCTGTTATGCGCATGTGCCGACTCAT
GTGGAATTCGGTGTGGTATGCATGTACGAACTCTGAATGTGCTTTGCTCA
ATTAAACAGATTCATCGAGACATCAAGGCCGGAAACATTCTCTTGGGCGA
GGACGGTCGAGTAAAGCTAGCCGATTTCGGGGTAGCCGGGTGGCTTGTAG
GGTACGGCAACCGGCGAAATGTCGCTAAAACGTTCGTGGGGACACCCTGC
TGGATGGCGCCGGAGGTGATGGAACAGGTCAGCACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6326:6638..7523-

>mRNA_Ecto-sp13_S_contig6326.17071.1 ID=mRNA_Ecto-sp13_S_contig6326.17071.1|Name=mRNA_Ecto-sp13_S_contig6326.17071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6326:6638..7523- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTATGTGCGATCACCCGAATGTTCTGAGCTGCTACGCTTCGTTCGT
GCATGAAAATGAGCTGTGGCTGGTCATGGAGTTCATGAGCAAAGGGTCGT
GTCTGCACGTGATGAACGTCGCCAAGAAGGAGGTGATGAAGCACAGCCCG
TTTTGCTGGTTTCGACTTTCGGAGGAGGAGTGGATCGCGTACATCTTGAA
ACAGACTCTTCAAGGCCTTAAGTACTTCCACGACCAGGGGCAGATTCATC
GAGACATCAAGGCCGGAAACATTCTCTTGGGCGAGGACGGTCGAGTAAAG
CTAGCCGATTTCGGGGTAGCCGGGTGGCTTGTAGGGTACGGCAACCGGCG
AAATGTCGCTAAAACGTTCGTGGGGACACCCTGCTGGATGGCGCCGGAGG
TGATGGAACAGGTCAGCACA
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