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Homology
BLAST of mRNA_Ecto-sp13_S_contig632.17064.1 vs. uniprot
Match: D7FII9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII9_ECTSI) HSP 1 Score: 564 bits (1453), Expect = 5.060e-199 Identity = 284/309 (91.91%), Postives = 293/309 (94.82%), Query Frame = 2
Query: 2 GNLAAGGLHVLLLLCCCIQWSRGFIVVSPCFRRGCSLQTLSSTDHMHERTSRRSGRHASLIRRRSGVPGFSLRANEAGGGAEEEDDTLELTKGFYSEVAARLGKTAQGQPQDSQETAKDEDSGSEIDKAIYDELRARRDFGFEQDLGLELEKRNITKEAEAKKIIDAGLEEMPGVTSSTTFLPSSELTPREVVTSVLEALKNNDKPYHNHGVEVFIRFLAPSSAMHGVEMSGVARYLAENRNRAFMHWNTMAFPRPLTVSGGAKQNKAFQPVKLKDTMTGAWHSVSVYLTLDARSNCWLIESCIVKGEV 928
GNLAAGGLHVLLLLCCC+QWS GFI VSPCFRRGCS QTLSST+ +H+R SR SGRH SLIRRRSG PGFSL+ANEAGGGAEEEDDTLELTKGFYSE+AARLGKTAQGQPQDSQETAKDEDSGS DELRARRDFGFEQDLGLELEKRNITKEAEAKKIIDAGLE+MPGVTSS TFLPSSELTPREVVTSVLEALKNND+PYHNHGVEVFIRFLAPSSAMHGVEMSGVARYLAENRNRAFMHWNTMAFPRPLTVSGGAKQNKAFQPVKL+DTMTGAWHSVSVYLTLDARSNCWLIESCIVKGEV
Sbjct: 5 GNLAAGGLHVLLLLCCCVQWSHGFIAVSPCFRRGCSQQTLSSTNDLHKRESRGSGRHGSLIRRRSGGPGFSLKANEAGGGAEEEDDTLELTKGFYSEIAARLGKTAQGQPQDSQETAKDEDSGSXXXXXXXDELRARRDFGFEQDLGLELEKRNITKEAEAKKIIDAGLEQMPGVTSSATFLPSSELTPREVVTSVLEALKNNDQPYHNHGVEVFIRFLAPSSAMHGVEMSGVARYLAENRNRAFMHWNTMAFPRPLTVSGGAKQNKAFQPVKLRDTMTGAWHSVSVYLTLDARSNCWLIESCIVKGEV 313
BLAST of mRNA_Ecto-sp13_S_contig632.17064.1 vs. uniprot
Match: A0A7S3WL80_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WL80_EMIHU) HSP 1 Score: 70.9 bits (172), Expect = 5.590e-11 Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 2
Query: 536 TTFLPSSELTPREVVTSVLEAL--KNNDKPYHNHGVEVFIRFLAPSSA--MHGVEMSGVARYLAENRNRAFMHWNTMAFPRPLT-VSGGAKQNKAFQPVKLKDTMTGAWHSVSVYLTL 874
T PS+ L+PREV+TSV+E+L N D+P +G EV +RFLAP+ A + + +G +RYL + F+ WN F + ++G +AFQ + L+ + T W S +L L
Sbjct: 25 TNLKPSAALSPREVITSVMESLHRSNWDRPTECYGFEVAMRFLAPTHAAKLKKAKPTGFSRYLRQQHRIRFVKWNEYRFEGDVARLTGDDGVEEAFQMISLRSSPTAEWCSARFHLVL 142
BLAST of mRNA_Ecto-sp13_S_contig632.17064.1 vs. uniprot
Match: A0A7R9YD20_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD20_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 2.250e-10 Identity = 71/267 (26.59%), Postives = 121/267 (45.32%), Query Frame = 2
Query: 203 PGFSLRANEAGGGAEEEDDT----LELTKGFYSEVAARLGKTAQGQPQDSQETAKDEDSGSEIDKAIYDELRARRDFGFEQDLGL----ELEKRNITKEAEA-KKIIDAGLEEM-------------PGVTSSTTFLPSSELTPREVVTSVLEALKNNDKPYHNHGVEVFIRFLAPSSAMHGVEMSGVARY---LAENRNRAFMHWNTMAFPRPLTVSGGAKQNKAFQPVKLKDTMTGAWHSVSVYLTLDARSN----CWLIESCIV 916
PG LR + G +E + T + T+ F+ V R G GQ + +K IY+ LR R FG E++ +E +N+T + +A ++++ A L M P + T+ P LTP VV S+L+A++ ND PY NHG+EV RF + +S+ + +Y + ++ + W+ + F +PL +G KA Q ++L+ + W V+V L R+ WL++S ++
Sbjct: 29 PGLRLRLAASAGPSEARNGTDSADSDFTREFFESVKEREG----GQLTE--------------EKDIYNALRERMGFGVEEEFARVRQQRIEGKNVTGDLDASEELLKATLRAMEQNIAENATAGQLPDIKLPTS--PDPALTPGLVVMSILQAMRCNDSPYENHGIEVLTRFTSSASSATDTDEPSFRKYCDFIPKSEYGILLKWDAIRF-KPLEKAG----KKALQKIQLRLADSNEW--VTVKFALSERTTFLGETWLLDSFLI 268
BLAST of mRNA_Ecto-sp13_S_contig632.17064.1 vs. uniprot
Match: A0A7S0K9M8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0K9M8_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 5.500e-5 Identity = 42/127 (33.07%), Postives = 63/127 (49.61%), Query Frame = 2
Query: 545 LPSSELTPREVVTSVLEALKNNDKPYHNHGVEVFIRFLAPSSAMHGVEMSGVARYLAENRNRAFMHWNTMAFPRPLTVSGGAKQNK--AFQPVKLKDTMTGAWHSVSVYLTLDARSNCWLIESCIVK 919
+P +ELT EVVT VLEAL+NND P N GVE+ + + +S + +E + E + + L Q+K AF V+L D M SV+ L+ + +CWLI+S +V+
Sbjct: 243 VPDAELTAGEVVTVVLEALRNNDNPSTNRGVEILFAYSSSASILADLERAPSVEEYGEMLRTSPDQKILLEHVDVLFDKADYSQDKKRAFITVRLMD-MEKTLTSVNFILSTGSSDDCWLIDSHLVR 368
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1493 |
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-28_000440.1 |
| Cds size | 795 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463876.6016233-UTR-Ecto-sp13_S_contig632:18684..19246 | 1681463876.6016233-UTR-Ecto-sp13_S_contig632:18684..19246 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig632 18685..19246 - |
| 1681463876.712103-UTR-Ecto-sp13_S_contig632:22662..22702 | 1681463876.712103-UTR-Ecto-sp13_S_contig632:22662..22702 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig632 22663..22702 - |
| 1681463876.7244205-UTR-Ecto-sp13_S_contig632:23079..23175 | 1681463876.7244205-UTR-Ecto-sp13_S_contig632:23079..23175 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig632 23080..23175 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463876.6129324-CDS-Ecto-sp13_S_contig632:19246..19346 | 1681463876.6129324-CDS-Ecto-sp13_S_contig632:19246..19346 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig632 19247..19346 - |
| 1681463876.6236272-CDS-Ecto-sp13_S_contig632:19567..19633 | 1681463876.6236272-CDS-Ecto-sp13_S_contig632:19567..19633 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig632 19568..19633 - |
| 1681463876.635826-CDS-Ecto-sp13_S_contig632:19901..20026 | 1681463876.635826-CDS-Ecto-sp13_S_contig632:19901..20026 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig632 19902..20026 - |
| 1681463876.6496801-CDS-Ecto-sp13_S_contig632:20469..20535 | 1681463876.6496801-CDS-Ecto-sp13_S_contig632:20469..20535 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig632 20470..20535 - |
| 1681463876.6618366-CDS-Ecto-sp13_S_contig632:21199..21340 | 1681463876.6618366-CDS-Ecto-sp13_S_contig632:21199..21340 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig632 21200..21340 - |
| 1681463876.673778-CDS-Ecto-sp13_S_contig632:22103..22244 | 1681463876.673778-CDS-Ecto-sp13_S_contig632:22103..22244 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig632 22104..22244 - |
| 1681463876.6899517-CDS-Ecto-sp13_S_contig632:22506..22662 | 1681463876.6899517-CDS-Ecto-sp13_S_contig632:22506..22662 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig632 22507..22662 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig632.17064.1 >prot_Ecto-sp13_S_contig632.17064.1 ID=prot_Ecto-sp13_S_contig632.17064.1|Name=mRNA_Ecto-sp13_S_contig632.17064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=265bp
MHERTSRRSGRHASLIRRRSGVPGFSLRANEAGGGAEEEDDTLELTKGFY SEVAARLGKTAQGQPQDSQETAKDEDSGSEIDKAIYDELRARRDFGFEQD LGLELEKRNITKEAEAKKIIDAGLEEMPGVTSSTTFLPSSELTPREVVTS VLEALKNNDKPYHNHGVEVFIRFLAPSSAMHGVEMSGVARYLAENRNRAF MHWNTMAFPRPLTVSGGAKQNKAFQPVKLKDTMTGAWHSVSVYLTLDARS NCWLIESCIVKGEV* back to topmRNA from alignment at Ecto-sp13_S_contig632:18685..23175- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig632.17064.1 ID=mRNA_Ecto-sp13_S_contig632.17064.1|Name=mRNA_Ecto-sp13_S_contig632.17064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4491bp|location=Sequence derived from alignment at Ecto-sp13_S_contig632:18685..23175- (Ectocarpus species13 EcNAP12_S_4_19m) AGGAAATCTTGCTGCTGGTGGTTTGCATGTGCTGCTCCTCCTCTGCTGCT
GCATTCAATGGAGTCGTGGGTTCATCGTCGTATCGCCATGTTTCAGGTAT
AAGTTGACGTGCAGCGGGAGGGTGAGGGTCTCTGGTTTATCGCCGCAACT
TCATGATTCACACGTACAACTTCATTTTTGTTGGAACAAAAGATTGCTGA
ACTTCTGCTCCACCTGCTCTTCACGATGTGTAAGATAACATACCCCACTC
GAAGCGGCTGCGGGAGTTATAATAGTCAGCAAATGAGGACACTCGAAGGC
CACAAGCAGAGTTACAAAGAGTGTCTTGAAAATTTGGTGCTTCCAAAAGT
GCAATACAGCTACACACAGAGCAGTCATTCATGGGCAATGTTGGCCTTTG
ATTTGCCATTCCGATGCGACCCTCTCTGCCATTTGACGTTCATGTGTTTC
GATGCCCGCTTTCTCCGCATCAGGAGGGGATGTTCACTGCAGACACTGTC
CAGCACCGATCATATGCACGAAAGGACAAGCCGGAGATCTGGCAGACACG
CCAGCCTCATTCGGCGTCGGTCAGGCGTACCAGGCTTTTCCCTAAGAGCA
AACGAGGCAGGGGGTGGCGCGGAGGAGGAAGACGATACGCTTGAGCTAAC
CAAAGGGTTTTACAGCGAGGTAGGGGCGGGCATGCTTGCAGGCTTACGTG
CCTGGATGGTTTTAGTTGGATGCAACGACTGCTGTGTTGTGACCGGTGGT
CTTTCGTTTTCCCGTGTATTTGTGTTCTTCATGTGGTACCTGTATTATTT
GTCAGTTGGGTGACGTCTCGGACCTGTGCACCGTCTCTGCACTCACGATA
TCTCTTGCGCCACTGCAAAGATCCTGTGAAGGCGAGCGTCCCTTAGAATC
CGGCTTGGCTTGTGCGATGTTTCTGTAACAGGTCGCGGCACGCTTGGGCA
AGACTGCGCAGGGACAACCGCAAGATAGCCAAGAAACGGCCAAAGACGAA
GATAGCGGCAGCGAAATCGACAAGGCAATCTACGACGAGCTTAGGGCACG
ACGCGACTTTGGTTTCGAGCAGGTAGACGCCCCTCCCTTCGTTCGCGGGA
CCCACGAAAGGGCAACAGTAGTCGCGCATTCCAATCCCCGTAGCTTTGCC
GTTCCGTGTCCGATCGCAAACCTCCGACGAGCCTCGATGACCTGGAGAGC
GCGATGAACAAACGTCCTTCTTGGCCGTGCTTCAGTCTTGCGGGAAAGAC
GTAGAACCTGGTACATGCTAGGCCGAGCGATTGGCTCGAATGCTGAAGAA
ACCTCAAGGTCGGTTTGTTGCCACGTCTTGTTCGATGGCACACTCGCGAG
GCTAGAGGTGTGACTTCAACGAGAAGTTTCCACCTGCTCCAGTCCTGCAG
TACAAGTAAGGACACGGTTCGGTAGGGATCCGGTCGTGGATCTGTGGTTC
CACGGTGCCACCAGGTATTCTTTTCCAGCGGATGGTTTAACTCGCAATAA
CGCAGGAGTCGACCTTGGTGTTTGTGGCGATTTTGCTGTTTTCAGTCCTT
TGAAGGTATTTTGTGCATGCGGTCCGATTAGCTTGGGCAGACGAAACCCG
ATTCTCGGTCCGCATGCGGCTACCGATTGTTTTTCAGTTACATATCGACG
CTTATTTGCCATCAAATTTCATGGCGCGGTGCGTGGCCCGCTTTGGTCAT
TGCAAGCTTACGGTGTCGATGCACAAGCGGCCGCCGATAGTATTTCAGTA
TACCGACGGTTTTTTGCATACGCATGTACATGGCGGGGTGGATGGTCCGC
ATTGGCCATGGCATAACGGTGCTCTCTGTACCCAGGACCTGGGGCTGGAG
CTGGAGAAACGGAATATTACGAAGGAGGCGGAGGCGAAGAAGATTATCGA
TGCAGGTCTGGAGGAGATGCCTGGGGTGACGAGCTCGACGACGTTCTTGC
CGTCCTCCGAGCTCACGCCAAGAGAGGTAAGGAGTGTGTGCATACACGTG
CGACCATGTTATCTTCCGCACTACTGTAGCGTACTGCTATTTGGCGCCGT
GTGTCGCCCCGTGCATGACTCCCCCAATCATGTACGTTGGGTTGATGTTT
AATACCAACATATTTGCCGTTCCGCGGCGAGCAGTGACGGCAGGGCATGC
CGTGACCGGCTGCTTTTCTTTGTGCAGCGATGTGTCTCGAGAACGTACAA
TGCGGTGTATCCCACACTTTGCCACCTGTGACATGTACTACACTTGCACT
TGCGTGTAGCGCCGGTAGAATGACACAGGACGGACCTTTACTCTTGAGGC
CATTTAGTCGGGCGAATCGCGTCAAGAAAACCGCGTCACAAGGCACTTGC
TTGCCACTCATGTCTCGTTAGTTGTGCAGGCACTTGCCGTACGAAAAAAG
GACTTGACGAATACTCCTGATGTGGGGCCTCAACTTGAGGACATGTCGAT
ACTCTGTATCGTGGAAATACCCGGACGCACTTACCTACGAAGCTGGAGGT
TATTTGAGGGTCATTTCTTGACACTCTGCCAAAATCACTCCCTGAAGTCG
GCAGTGAGCGGACCCAGTCACCGACCTACCTCTGTCGAGTGAGAGTGAGA
AATTTCATGGAAATCCTTAGTTGATTTTTCTCGTTTGCAGGTGGTGACTT
CTGTTCTCGAGGCCCTGAAGAACAACGACAAACCCTACCACAACCACGGC
GTCGAGGTGAGGTTGAACTTCAAACGTCGGTTGTGCAAACGATCGAAAGG
TCGGTGATGACGTTTCTTGTCGCTCCTAGAAACCTCGCAGCGGCCAAGTT
TCGCAATCGAGGCGCCTCTGAAGCTTAATACCGCCGTTATGGTCCCCGTA
TTAGGCCGTGCAGCTAGTGCCAAATCATTTGGCCGGCCTTCTACCGCGCA
CCCGGCACTATTCAGAGTATGAAACAGCTTGAATCTTCCATCCACGTCAC
GCGATTTTCACCGGCCTTACAGGGCCACCGACCACATGCAGGGACCACAC
TGCTCTTGTAGTGCTTCAGCTTTCAATAGGTTTCTGGCAAACGAAGGTTG
GCTGTTCCATGCCCATGCAACTCCTCGTCGATCTCAAGAAGAGCCAAGGT
CGTCTTGACGCGATCCGGTGCTGACAGAAATGCGCTAATCGTTTCTCAGG
TTTTCATTAGATTCCTTGCCCCGTCTAGCGCGATGCACGGGGTCGAAATG
TCGGGCGTGGCCCGATATCTGGCGGAGAATCGGAACCGTGCCTTCATGCA
CTGGAATACCATGGCATTCCCGAGGTGGGTCTTCGAAAGTTGTTCGCTGG
GAAGAATCAAGCTTACGGCGTACCCCTGGTGCTGGCATCTTTACATAAAC
GCCTTCGCCATGCTCCTTCTCTGCACTAAGCGCGTTTTTAAATCGTGCCA
CGTCAATTCTTGTGTGTGCGTAACATTGCGCTTCGCATGTCTCGTCATAT
GAAACTCTCCCCCAACCACCCTTGCACGTGTGTTCATCCCTCCGTTCCCC
ATATGCACCTCTTGCGACTGCTCGTGACCCAATTTGCTCCAGACCGCTGA
CGGTGTCGGGAGGGGCTAAGCAAAACAAGGCCTTCCAGCCTGTCAAGCTC
AAAGACACGTGAGTCCTTGCACATTGTTATACCAGACCACCCTCTCCGAA
GTATTATCGTGCTCTCGCTCGTTGCGCTGAATGCTGCCCAGCCAATAGTA
CGTTTGTTTTCCTCATCGTGAGACGGTTACGCCTGGCGAGGCTCGCCACC
TAGGATCATGTATCCACCACTAGAAGGAGAACATGCGCACAGACTAACAC
AGTTGTCATTGGCGCTAATCTCTCGGCAGAATGACCGGCGCTTGGCACTC
CGTGAGCGTCTACCTTACTCTGGACGCCCGGAGTAATTGCTGGCTCATAG
AGTCTTGCATTGTCAAGGGAGAGGTGTAGGAAGACAAGGAGAGGTGCTGC
CACTCGACGGATCTGGGTGGATTGTAAGAGCCTGGAACACGTCATCAGTA
TACGGTGTCGAGGGAGCGGATCTTTGATATGATACGCGGTAATGAGTGGT
CGTGAGGCGTCTCGGGTAGAAGCAGTTTTGGTTGTTCACGCGCAACACAA
CAGAGTTGTGGTTCGCTTTGTTTTTCTTGGTCTAATTTTGAGGGAGAGCA
GTCGGTCGCGGAAACACTCGAACCTTTTCAGTTAGCTCCGTTGTCCAGAA
AGGTATGTTCCGTTGTGTTGCCTTCATCTGCGACCGGTGTCCAAATGCAT
GCTTGCGCGTTCGGTCAACATCGGTCAGAGCTTGCGTGGCTGGTGTTGTG
TGTTTGGAGTGTTGGTTTAAACTTAACGTACCCGACAATGTTCGATATAT
ATCGTACGTCTGAAACGACTATCTGGCTCGAAGTAGACGTCCTGGAAAGA
AAAGGCAGCTGTAAAAAGGATTTGCGCTGGAATGCTTACGCATTCCCCCG
AGAAATGACCACGCCTCAACCATGCAGCACTCAAGAGGCTC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig632:18685..23175- >mRNA_Ecto-sp13_S_contig632.17064.1 ID=mRNA_Ecto-sp13_S_contig632.17064.1|Name=mRNA_Ecto-sp13_S_contig632.17064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig632:18685..23175- (Ectocarpus species13 EcNAP12_S_4_19m) ATGCACGAAAGGACAAGCCGGAGATCTGGCAGACACGCCAGCCTCATTCG GCGTCGGTCAGGCGTACCAGGCTTTTCCCTAAGAGCAAACGAGGCAGGGG GTGGCGCGGAGGAGGAAGACGATACGCTTGAGCTAACCAAAGGGTTTTAC AGCGAGGTCGCGGCACGCTTGGGCAAGACTGCGCAGGGACAACCGCAAGA TAGCCAAGAAACGGCCAAAGACGAAGATAGCGGCAGCGAAATCGACAAGG CAATCTACGACGAGCTTAGGGCACGACGCGACTTTGGTTTCGAGCAGGAC CTGGGGCTGGAGCTGGAGAAACGGAATATTACGAAGGAGGCGGAGGCGAA GAAGATTATCGATGCAGGTCTGGAGGAGATGCCTGGGGTGACGAGCTCGA CGACGTTCTTGCCGTCCTCCGAGCTCACGCCAAGAGAGGTGGTGACTTCT GTTCTCGAGGCCCTGAAGAACAACGACAAACCCTACCACAACCACGGCGT CGAGGTTTTCATTAGATTCCTTGCCCCGTCTAGCGCGATGCACGGGGTCG AAATGTCGGGCGTGGCCCGATATCTGGCGGAGAATCGGAACCGTGCCTTC ATGCACTGGAATACCATGGCATTCCCGAGACCGCTGACGGTGTCGGGAGG GGCTAAGCAAAACAAGGCCTTCCAGCCTGTCAAGCTCAAAGACACAATGA CCGGCGCTTGGCACTCCGTGAGCGTCTACCTTACTCTGGACGCCCGGAGT AATTGCTGGCTCATAGAGTCTTGCATTGTCAAGGGAGAGGTGTAG back to top
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