mRNA_Ecto-sp13_S_contig6318.17059.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Match: A0A6H5JPV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV4_9PHAE) HSP 1 Score: 340 bits (872), Expect = 8.730e-105 Identity = 284/318 (89.31%), Postives = 286/318 (89.94%), Query Frame = 1
Query: 637 MPRADLLAEPSAAAAAGSPLTRGKATTTGAAPSP---SRLSXXXXXXXXXAGGSIGRAGSNRLLHGMATEAGIGGGSSSTDNSPRRPSVGRGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGRTDGXXMXEGEEGRDGEAGAAATEDPKAARIEQLRKLTKDCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFSCGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGHSDDHAEEVKARAKVCSRSV 1581
MPRADLLAEPSAAAAAGSPLTRGKAT SRLS AGGSIGRAGSNRLLHGMA EAGIGGGSSSTDNSPRRPS GRGV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RTDGXX XEGEEGRDG AGAAATEDPKAARIEQLRKLTK+CLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQF+CGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGHSDDHA EVKARAKV V
Sbjct: 1 MPRADLLAEPSAAAAAGSPLTRGKATAXXXXXXXXXXSRLSGGASSSRRRAGGSIGRAGSNRLLHGMAPEAGIGGGSSSTDNSPRRPSAGRGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RTDGXXXXEGEEGRDGNAGAAATEDPKAARIEQLRKLTKNCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGHSDDHAVEVKARAKVARSGV 317
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Match: D8LN33_ECTSI (Putative subunit of the Anaphase Promoting Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN33_ECTSI) HSP 1 Score: 274 bits (701), Expect = 3.700e-79 Identity = 229/257 (89.11%), Postives = 236/257 (91.83%), Query Frame = 1
Query: 826 MATEAGIGGGSSSTDNSPRRPSVGRGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----IGRTDGXXMXEGEEGRDGEAGAAATEDPKAARIEQLRKLTKDCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFSCGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGHSDDHAEEVKARAKVCSRSVS 1584
MA EAGIGGGSSSTDNSPRRPS GR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX X IGRTDG M +GEEGRDG+AGAAATEDPKAARIEQLR+LTK+CLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQF+CGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGH+DDHAEEVKARAK V+
Sbjct: 1 MAPEAGIGGGSSSTDNSPRRPSAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSHAXXXXXIGRTDGGGMGDGEEGRDGQAGAAATEDPKAARIEQLRELTKNCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFACGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLLEKVLGHTDDHAEEVKARAKAARSGVA 257
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Match: A0A383WBY8_TETOB (Uncharacterized protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WBY8_TETOB) HSP 1 Score: 62.8 bits (151), Expect = 1.060e-6 Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 1225 EQLRKLTKDCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFSCGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLL 1506
+QLR L +DC+ +++ TA +YADKLVT + + V L+A+ F G + R V LL H L++ +R +LAA+SL A + +E ++LL
Sbjct: 6 DQLRSLVQDCIAKHLYSTAVFYADKLVTLTQYAPGDVYLVAQTYFVSGQHRRAVMLLKHHGLME-----DVRFRYLAAKSLAAVDDWDEVLALL 94
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Match: A0A7J7PWQ9_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PWQ9_9CHLO) HSP 1 Score: 57.8 bits (138), Expect = 3.750e-5 Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 1228 QLRKLTKDCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFSCGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLL 1506
QLR L +DC+ +++ TA +YADKLVT + + V L+A+ F + R V LL H L++ +R +LAA+ L E+ +E ++LL
Sbjct: 5 QLRSLVQDCIAKHLYSTAVFYADKLVTLTQYAPGDVYLVAQTYFVSRQHRRAVMLLKHHGLME-----DVRFRYLAAKCLAEVEEWDECLTLL 92
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Match: A0A061QQV3_9CHLO (Cell division n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QQV3_9CHLO) HSP 1 Score: 57.0 bits (136), Expect = 4.620e-5 Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 1
Query: 1231 LRKLTKDCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFSCGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLL 1506
LR L +DC+E+++ +AA++ADKLVT SN++ V LLA+ F + R + LL Q + ++ F +LAAR L + EE +S+L
Sbjct: 10 LRSLIQDCIEKHLYTSAAFFADKLVTLSNYEPGDVYLLAQTFFLGRNFRRALKLLNQSKTVERDARFR----YLAARCLFECSEWEECLSML 97
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Match: A0A061RDF5_9CHLO (Anaphase-promoting complex subunit 6 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RDF5_9CHLO) HSP 1 Score: 57.0 bits (136), Expect = 6.630e-5 Identity = 35/92 (38.04%), Postives = 55/92 (59.78%), Query Frame = 1
Query: 1231 LRKLTKDCLEENMSDTAAYYADKLVTFSNFDREAVLLLAKAQFSCGAYLRTVHLLAQHRLLDYADNFGLRACHLAARSLRAAEKTEESVSLL 1506
LR L +DC+E+++ +AA++ADKLVT SN++ V LLA+ F + R + LL Q + ++ F +LAAR L + EE +S+L
Sbjct: 10 LRSLIQDCIEKHLYTSAAFFADKLVTLSNYEPGDVYLLAQTFFLGRNFRRALKLLNQSKTVERDARFR----YLAARCLFECSEWEECLSML 97 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6318.17059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6318.17059.1 >prot_Ecto-sp13_S_contig6318.17059.1 ID=prot_Ecto-sp13_S_contig6318.17059.1|Name=mRNA_Ecto-sp13_S_contig6318.17059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=529bp AAWFIFVLSSPSNAQQGIANNNNNNNNNNNEPNSARLRLKPPHPPPPLLPback to top mRNA from alignment at Ecto-sp13_S_contig6318:3596..7860+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6318.17059.1 ID=mRNA_Ecto-sp13_S_contig6318.17059.1|Name=mRNA_Ecto-sp13_S_contig6318.17059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6318:3596..7860+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6318:3596..7860+ >mRNA_Ecto-sp13_S_contig6318.17059.1 ID=mRNA_Ecto-sp13_S_contig6318.17059.1|Name=mRNA_Ecto-sp13_S_contig6318.17059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1587bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6318:3596..7860+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |