mRNA_Ecto-sp13_S_contig6316.17058.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6316.17058.1
Unique NamemRNA_Ecto-sp13_S_contig6316.17058.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6316.17058.1 vs. uniprot
Match: D7FTZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ1_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 5.380e-20
Identity = 42/46 (91.30%), Postives = 42/46 (91.30%), Query Frame = -1 
Query:  190 PIQYYGEARHQDEQDGLGSPATTNRYCGVESYWQVNPGQVRNLVTS 327
            PIQYYGEARHQDE DG GS ATTNRYCGVESYWQV PGQVRNLVTS
Sbjct:  567 PIQYYGEARHQDEHDGSGSTATTNRYCGVESYWQVKPGQVRNLVTS 612
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BLAST of mRNA_Ecto-sp13_S_contig6316.17058.1 vs. uniprot
Match: A0A6H5KRQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.950e-18
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = -1 
Query:  199 PIQYYGEARHQDEQDGLGSPATTNRYCGVESYWQVNPGQVRNL 327
            PIQYYGEARHQD++DG GS ATTNRYCGVESYWQV PGQVRNL
Sbjct:  303 PIQYYGEARHQDDRDGSGSTATTNRYCGVESYWQVKPGQVRNL 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6316.17058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTZ1_ECTSI5.380e-2091.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRQ7_9PHAE4.950e-1888.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6316contigEcto-sp13_S_contig6316:5099..5426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size328
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463876.0831993-CDS-Ecto-sp13_S_contig6316:5098..54251681463876.0831993-CDS-Ecto-sp13_S_contig6316:5098..5425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6316 5099..5425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6316.17058.1prot_Ecto-sp13_S_contig6316.17058.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6316 5099..5425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6316.17058.1

>prot_Ecto-sp13_S_contig6316.17058.1 ID=prot_Ecto-sp13_S_contig6316.17058.1|Name=mRNA_Ecto-sp13_S_contig6316.17058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
HAPGDIYIPHCATALLRKPERGHRVCSGCFTCVCHLTASPLLVTRSIRSR
SMYPWPNTCTPTRRCHQIPDLARVDLPVGFHAAVPVRCGRRAQPVLLILV
AGLAVVLDR
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mRNA from alignment at Ecto-sp13_S_contig6316:5099..5426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6316.17058.1 ID=mRNA_Ecto-sp13_S_contig6316.17058.1|Name=mRNA_Ecto-sp13_S_contig6316.17058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=328bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6316:5099..5426+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGCACCCGGTGACATTTACATCCCACACTGCGCAACTGCTTTACTGCG
AAAGCCAGAGAGGGGTCACCGGGTATGCAGCGGATGTTTCACGTGCGTCT
GCCACCTTACGGCTAGCCCTCTCCTCGTCACACGGTCTATACGGAGTCGA
TCCATGTACCCGTGGCCCAACACGTGCACACCCACTCGCCGATGTCACCA
GATTCCTGACTTGGCCCGGGTTGACCTGCCAGTAGGATTCCACGCCGCAG
TACCGGTTCGTTGTGGCAGGCGAGCCCAACCCGTCTTGCTCATCCTGGTG
GCGGGCCTCGCCGTAGTACTGGATCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6316:5099..5426+

>mRNA_Ecto-sp13_S_contig6316.17058.1 ID=mRNA_Ecto-sp13_S_contig6316.17058.1|Name=mRNA_Ecto-sp13_S_contig6316.17058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6316:5099..5426+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGCACCCGGTGACATTTACATCCCACACTGCGCAACTGCTTTACTGCG
AAAGCCAGAGAGGGGTCACCGGGTATGCAGCGGATGTTTCACGTGCGTCT
GCCACCTTACGGCTAGCCCTCTCCTCGTCACACGGTCTATACGGAGTCGA
TCCATGTACCCGTGGCCCAACACGTGCACACCCACTCGCCGATGTCACCA
GATTCCTGACTTGGCCCGGGTTGACCTGCCAGTAGGATTCCACGCCGCAG
TACCGGTTCGTTGTGGCAGGCGAGCCCAACCCGTCTTGCTCATCCTGGTG
GCGGGCCTCGCCGTAGTACTGGATCGG
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