mRNA_Ecto-sp13_S_contig12.1705.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12.1705.1 vs. uniprot
Match: A0A6H5KSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC7_9PHAE) HSP 1 Score: 188 bits (478), Expect = 4.960e-48 Identity = 105/209 (50.24%), Postives = 126/209 (60.29%), Query Frame = 1
Query: 4 YSKIIGLLQPQNVRRVKNTFSAGWTPGGYRDVKVNPVVNQHLCEIQLQLRDFYALKSRQHAVYTWARELKVTTDMEAGDLFNNQSPEIMEEMIRLALQNWHGTGPRLSHLQIEAGQYDVAEKAFR------------------------------------------QGKYGEADSLFLRAIGIYEKALGRDHPTLAHAFSSRADLLVA 504
Y I+GL + NV RVKN F++ W P GYRDVK+NPVVN HLCEIQL LR+F+ALK QH VY WAREL VTT+M DLF N SPE+M+EM+RLA QNW TG L LQ+ AGQYD AE++ R QGK+ EAD L+LRAI + EK LGRDHP LA + ++RA+LL A
Sbjct: 174 YLAIMGLPEA-NVLRVKNGFNSDWMPSGYRDVKLNPVVNDHLCEIQLHLREFFALKGGQHVVYEWARELNVTTEMRGEDLFKNVSPEVMKEMMRLAGQNWRETGFCLPDLQLAAGQYDRAEESHRELLGDAENDAARVAEDHDSKESRQALLRVNAARARLALVLEKQGKHAEADPLYLRAIEVAEKMLGRDHPDLATSINNRAELLRA 381
BLAST of mRNA_Ecto-sp13_S_contig12.1705.1 vs. uniprot
Match: D7FH93_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH93_ECTSI) HSP 1 Score: 190 bits (482), Expect = 2.750e-47 Identity = 92/165 (55.76%), Postives = 119/165 (72.12%), Query Frame = 1
Query: 4 YSKIIGLLQPQNVRRVKNTFSAGWTPGGYRDVKVNPVVNQHLCEIQLQLRDFYALKSRQHAVYTWARELKVTTDMEAGDLFNNQSPEIMEEMIRLALQNWHGTGPRLSHLQIEAGQYDVAEKAFRQGKYGEADSLFLRAIGIYEKALGRDHPTLAHAFSSRADLL 498
YS I+ + + Q+V R+KN F++ W P GYRDVK+NPVVN+HLCEIQL LR+F+ALK QH VY WAR+L VTT M + DL N SPE+ +EM+ LA +NW GT L LQ+ AGQYD+AEK+ RQGKY EA++LF R + I EK G DHP +A ++ A+ L
Sbjct: 174 YSSIMEMPE-QHVLRIKNGFNSDWMPSGYRDVKLNPVVNEHLCEIQLHLREFFALKGGQHEVYKWARDLNVTTGMRSEDLIKNLSPEVSKEMLHLAGENWRGTAYVLPDLQLAAGQYDLAEKSHRQGKYKEAETLFRRLLAINEKVYGADHPEIATDLNNWAEFL 337
BLAST of mRNA_Ecto-sp13_S_contig12.1705.1 vs. uniprot
Match: A0A6H5JK27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK27_9PHAE) HSP 1 Score: 192 bits (489), Expect = 6.830e-46 Identity = 103/204 (50.49%), Postives = 124/204 (60.78%), Query Frame = 1
Query: 1 VYSKIIGLLQPQNVRRVKNTFSAGWTPGGYRDVKVNPVVNQHLCEIQLQLRDFYALKSRQHAVYTWARELKVTTDMEAGDLFNNQSPEIMEEMIRLALQNWHGTGPRLSHLQIEAGQYDVAEKAFRQ------------------------------------------GKYGEADSLFLRAIGIYEKALGRDHPTLAHAFSSR 486
V+SKI+GLLQPQ+V RVKN F + WTPGGYRDVKVNPVVN+HLCEIQLQLR+F+ LKS QHAVYTWAR+L V T M+A DLF N S +MEEMI LA QNW GT L +Q+ AGQY+ AEK RQ GK+ EA+SL+ ++ I E+ LG +HP +A S R
Sbjct: 141 VFSKIMGLLQPQDVLRVKNGFDSDWTPGGYRDVKVNPVVNEHLCEIQLQLRNFFTLKSGQHAVYTWARDLNVVTKMQATDLFKNVSRLVMEEMIHLARQNWCGTWHWLPEIQLAAGQYEEAEKGLRQLLLEAEEALSRFEDSSDTKESRQALLTLQTAKGTLGFVLQQQGKFAEAESLYKNSLAILEEVLGAEHPDVATTLSYR 344
BLAST of mRNA_Ecto-sp13_S_contig12.1705.1 vs. uniprot
Match: D8LQL3_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL3_ECTSI) HSP 1 Score: 184 bits (466), Expect = 1.050e-44 Identity = 99/168 (58.93%), Postives = 116/168 (69.05%), Query Frame = 1
Query: 1 VYSKIIGLLQPQNVRRVKNTFSAGWTPGGYRDVKVNPVVNQHLCEIQLQLRDFYALKSRQHAVYTWARELKVTTDMEAGDLFNNQSPEIMEEMIRLALQNWHGTGPRLSHLQIEAGQYDVAEKAFRQGKYGEADSLFLRAIGIYEKALGRDHPTLAHAFSSRADLLVA 504
VYS I+G + +VRRV N F W P GYRDVKVNPVVN+HLCEIQL L DF LKS QHAVY WAR+LKVT+ M A DLF+ S E+ EEMIRLA Q+W TG L L + +GQY AE+ RQGKY EAD L LR I + E LG DHP +A ++RA+LL A
Sbjct: 174 VYSDIMGSM---DVRRVTNGFKNDWMPSGYRDVKVNPVVNEHLCEIQLHLGDFSVLKSDQHAVYEWARDLKVTSKMRATDLFSTLSREVTEEMIRLARQDWCRTGYCLPELLLASGQYHKAEEGLRQGKYVEADRLCLRDIEMGEDTLGPDHPDVAIRLNNRAELLRA 338
BLAST of mRNA_Ecto-sp13_S_contig12.1705.1 vs. uniprot
Match: D7FTB3_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB3_ECTSI) HSP 1 Score: 187 bits (474), Expect = 2.720e-44 Identity = 98/207 (47.34%), Postives = 124/207 (59.90%), Query Frame = 1
Query: 4 YSKIIGLLQPQNVRRVKNTFSAGWTPGGYRDVKVNPVVNQHLCEIQLQLRDFYALKSRQHAVYTWARELKVTTDMEAGDLFNNQSPEIMEEMIRLALQNWHGTGPRLSHLQIEAGQYDVAEKAFRQ-----------------------------------------GKYGEADSLFLRAIGIYEKALGRDHPTLAHAFSSRADLLV 501
+S I+G LQPQ+V RV N F++ W P GYRDVKVN VV++HLCEIQLQLR+F ALKS QHAVY WAR+L VT++ME D+F N SPE++EEM+ LA ++WHGT P L HLQ+ AGQY AEK +Q GKY EA+ L+ RA+ + +G+ HP A A +RA LLV
Sbjct: 218 FSAILGSLQPQDVLRVANGFNSDWMPSGYRDVKVNAVVHEHLCEIQLQLREFVALKSDQHAVYEWARDLNVTSEMEPEDMFENISPEVVEEMMHLATEDWHGTRPCLEHLQLAAGQYAQAEKGLKQQLLEAEGAKRVFEDNDGKESRMALLDENANRAALCRALSEQGKYEEAEHLYTRAVEVLGVTVGQGHPIYARALGNRAGLLV 424
BLAST of mRNA_Ecto-sp13_S_contig12.1705.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE) HSP 1 Score: 176 bits (446), Expect = 2.250e-40 Identity = 94/193 (48.70%), Postives = 117/193 (60.62%), Query Frame = 1
Query: 37 NVRRVKNTFSAGWTPGGYRDVKVNPVVNQHLCEIQLQLRDFYALKSRQHAVYTWARELKVTTDMEAGDLFNNQSPEIMEEMIRLALQNWHGTGPRLSHLQIEAGQYDVAEKAFRQ---------------------------------------GKYGEADSLFLRAIGIYEKALGRDHPTLAHAFSSRADLL 498
+V RV N F++ W P GYRDVKVNPVVN+H+CEIQL LR+F+ LKS QHAVY WAR+LKVTT + A +LF+ S +I EEMIRLA +NWHGTG L LQ++AGQYD AEK +RQ GKY EA++L+ + I EK LG +HP+LA + ADLL
Sbjct: 1611 DVLRVANGFNSDWMPSGYRDVKVNPVVNEHICEIQLHLREFFTLKSDQHAVYEWARDLKVTTMLRAENLFDFLSRDITEEMIRLAQRNWHGTGRFLPRLQLDAGQYDQAEKGYRQKLSEAEDNRRGVEDNGNTESREASLRSAKAGLGCVLGLKGKYAEAEALYAQCQAIEEKVLGPEHPSLATTLHNLADLL 1803
BLAST of mRNA_Ecto-sp13_S_contig12.1705.1 vs. uniprot
Match: A0A6H5K147_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K147_9PHAE) HSP 1 Score: 173 bits (439), Expect = 6.410e-40 Identity = 96/206 (46.60%), Postives = 117/206 (56.80%), Query Frame = 1
Query: 1 VYSKIIGLLQPQNVRRVKNTFSAGWTPGGYRDVKVNPVVNQHLCEIQLQLRDFYALKSRQHAVYTWARELKVTTDMEAGDLFNNQSPEIMEEMIRLALQNWHGTGPRLSHLQIEAGQYDVAEK-----------------------------------------AFRQGKYGEADSLFLRAIGIYEKALGRDHPTLAHAFSSRADL 495
VYS I GL +P +V RVKN F++ W P GYRDVKVNPVVN HLCEIQLQLR+F+ALK QHAVY WAREL V D+ A L+ N S E+ +EM+RLA QNW GTG L LQ+ AGQYD+ EK +QGKY EA++L+ +A E LG +HP LA ++ A L
Sbjct: 270 VYSAITGLPKPHHVLRVKNGFNSDWMPSGYRDVKVNPVVNNHLCEIQLQLREFFALKGGQHAVYKWARELNVVADLRAEYLYKNLSIEVTKEMMRLAGQNWRGTGYCLPDLQVAAGQYDLVEKDLGQRLTDAERKTHGVEDHGSKESRRALLRLNTARARLAYVRLQQGKYSEAETLYKQAAASNELVLGPEHPRLAMDLNNLAGL 475
BLAST of mRNA_Ecto-sp13_S_contig12.1705.1 vs. uniprot
Match: D7FGT0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT0_ECTSI) HSP 1 Score: 172 bits (436), Expect = 1.060e-39 Identity = 98/208 (47.12%), Postives = 117/208 (56.25%), Query Frame = 1
Query: 37 NVRRVKNTFSAGWTPGGYRDVKVNPVVNQHLCEIQLQLRDFYALKSRQHAVYTWARELKVTTDMEAGDLFNNQSPEIMEEMIRLALQNWHGTGPRLSHLQIEAGQYDVAEKAFRQ------------------------------------------------------GKYGEADSLFLRAIGIYEKALGRDHPTLAHAFSSRADLL 498
+V RV N F++ W P GYRDVKVNPVVN+HLCEIQL L DF+ LKS QHAVY WAR+LKVTT + A +LF+ S +I EEMIRLA +NWHGTG L LQ++AGQYD AEK FRQ GKY EA +L R+ I+EKALG DHP +A + +S A LL
Sbjct: 184 DVLRVANGFNSDWMPSGYRDVKVNPVVNEHLCEIQLHLHDFFTLKSDQHAVYEWARDLKVTTMLRAENLFDFLSRDITEEMIRLAQRNWHGTGRFLPRLQLDAGQYDQAEKGFRQELSEAEDNKRGVEDKDNKESRKKSLRSAKASLGCVLGLKSPGLEHGISRGHHGEGKYEEARALHQRSHSIFEKALGPDHPDVATSLTSLAGLL 391
BLAST of mRNA_Ecto-sp13_S_contig12.1705.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE) HSP 1 Score: 171 bits (433), Expect = 1.130e-39 Identity = 91/202 (45.05%), Postives = 117/202 (57.92%), Query Frame = 1
Query: 16 IGLLQPQNVRRVKNTFSAGWTPGGYRDVKVNPVVNQHLCEIQLQLRDFYALKSRQHAVYTWARELKVTTDMEAGDLFNNQSPEIMEEMIRLALQNWHGTGPRLSHLQIEAGQYDVAEKAFRQ-----------------------------------------GKYGEADSLFLRAIGIYEKALGRDHPTLAHAFSSRADLL 498
+ +++ V RVKN F++ W P GYRDVK+NPVVN HLCEIQL LR F+ LK QHAVY WAREL VTTDM + DLF N SPE+ EEMIRLA QNW GT L +Q++AGQYD+AEK+ RQ GK+ EA++++ ++ I +K G DHP +A ++ A LL
Sbjct: 176 LAIMELPEVLRVKNGFNSDWMPSGYRDVKLNPVVNDHLCEIQLHLRGFFELKGGQHAVYEWARELNVTTDMRSKDLFKNLSPEVSEEMIRLAGQNWAGTAYVLPDVQLDAGQYDLAEKSHRQELADAEHEAREFEDHDSEESRRAMHGENTARSRLAHVLEKQGKFEEAETIYRHSMSILKKTHGPDHPEIATGLNNWAGLL 377
BLAST of mRNA_Ecto-sp13_S_contig12.1705.1 vs. uniprot
Match: D8LQZ4_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ4_ECTSI) HSP 1 Score: 170 bits (431), Expect = 2.790e-39 Identity = 99/205 (48.29%), Postives = 114/205 (55.61%), Query Frame = 1
Query: 4 YSKIIGLLQPQNVRRVKNTFSAGWTPGGYRDVKVNPVVNQHLCEIQLQLRDFYALKSRQHAVYTWARELKVTTDMEAGDLFNNQSPEIMEEMIRLALQNWHGTGPRLSHLQIEAGQYDVAEK-----------AFR------------------------------QGKYGEADSLFLRAIGIYEKALGRDHPTLAHAFSSRADL 495
+S I+G LQP VRRV N F + W P GYRDVKVNPVVN+H+CEIQLQLR FY LK QHAVY WAREL VT MEA LF N S E+ EEMIRLA NW GTG L L AGQY AE+ AFR QGK+ EA+ L+ R+ I E+ LG HP +A ++RA L
Sbjct: 145 FSGILGRLQPHEVRRVTNGFKSDWMPSGYRDVKVNPVVNEHVCEIQLQLRQFYELKHDQHAVYEWARELNVTAKMEAEQLFENLSREVTEEMIRLAEGNWRGTGYCLVDLLTMAGQYAKAEEGSRKGLSEAEDAFRCIEDRGSKEWREALLQESTARRNLGYALKMQGKHAEAEPLYERSQAIREEVLGPKHPDVAEVLNNRATL 349 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12.1705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12.1705.1 >prot_Ecto-sp13_S_contig12.1705.1 ID=prot_Ecto-sp13_S_contig12.1705.1|Name=mRNA_Ecto-sp13_S_contig12.1705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1405bp MEAGDLFNNQSPEIMEEMIRLALQNWHGTGPRLSHLQIEAGQYDVAEKAFback to top mRNA from alignment at Ecto-sp13_S_contig12:13384..30959- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12.1705.1 ID=mRNA_Ecto-sp13_S_contig12.1705.1|Name=mRNA_Ecto-sp13_S_contig12.1705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=17576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12:13384..30959- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12:13384..30959- >mRNA_Ecto-sp13_S_contig12.1705.1 ID=mRNA_Ecto-sp13_S_contig12.1705.1|Name=mRNA_Ecto-sp13_S_contig12.1705.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=4215bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12:13384..30959- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |