mRNA_Ecto-sp13_S_contig63059.17050.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig63059.17050.1
Unique NamemRNA_Ecto-sp13_S_contig63059.17050.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig63059.17050.1 vs. uniprot
Match: D8LGK3_ECTSI (Vta1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK3_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 6.370e-32
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1
Query:    1 MAMSIPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRMYATEQAMKLQDNSEAG 165
            MAMSIPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRMYATEQAMKLQDNSEAG
Sbjct:    1 MAMSIPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRMYATEQAMKLQDNSEAG 55          
BLAST of mRNA_Ecto-sp13_S_contig63059.17050.1 vs. uniprot
Match: F0YCQ0_AURAN (Vta1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCQ0_AURAN)

HSP 1 Score: 52.8 bits (125), Expect = 1.350e-6
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    1 MAMSIPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRMYATEQAMKLQDNS 156
            ++ S+P  +K    +++RAE LD+A +P A VVAYHCR YA E  + L+D +
Sbjct:    3 LSSSVPADMKACKSFLQRAEELDRASDPNAKVVAYHCRQYAMELGIALRDRA 54          
BLAST of mRNA_Ecto-sp13_S_contig63059.17050.1 vs. uniprot
Match: A0A7S2LH26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LH26_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.990e-6
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    7 MSIPPGLKPVTQYVRRAERLDK-APEPEAPVVAYHCRMYATEQAMKL 144
            + IPP LK +TQY+RRAE LD    +PE+ +VAY+CR YA +  + L
Sbjct:    4 LKIPPELKRITQYIRRAEELDNDKTKPESRLVAYYCRQYAVQSGISL 50          
BLAST of mRNA_Ecto-sp13_S_contig63059.17050.1 vs. uniprot
Match: A0A7S2R0K1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0K1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.730e-6
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 1
Query:    1 MAMSIPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRMYATEQAMKL 144
            M + +PP LK +TQ+VRRAE LD    PE+ VV+Y+ R YA +  + L
Sbjct:    1 MPLKVPPELKKITQFVRRAEELDSESSPESRVVSYYSRQYAVQMGLPL 48          
BLAST of mRNA_Ecto-sp13_S_contig63059.17050.1 vs. uniprot
Match: A0A7S2LHP1_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHP1_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.000e-6
Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    7 MSIPPGLKPVTQYVRRAERLDK-APEPEAPVVAYHCRMYATEQAMKL 144
            + IPP LK +TQY+RRAE LD    +PE+ +VAY+CR YA +  + L
Sbjct:    4 LKIPPELKRITQYIRRAEELDNDKTKPESRLVAYYCRQYAVQSGISL 50          
BLAST of mRNA_Ecto-sp13_S_contig63059.17050.1 vs. uniprot
Match: A0A7S4D8M6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8M6_HETAK)

HSP 1 Score: 50.4 bits (119), Expect = 7.540e-6
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   10 SIPPGLKPVTQYVRRAERLDK-APEPEAPVVAYHCRMYATEQAMKL 144
            +IPP LKP+T Y+RRAE LD+    PE+ +VAY CR YA E  + L
Sbjct:    3 TIPPVLKPITSYIRRAEELDRDTSRPESVLVAYFCRSYAMELGIPL 48          
BLAST of mRNA_Ecto-sp13_S_contig63059.17050.1 vs. uniprot
Match: A0A7S1ZCU8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZCU8_TRICV)

HSP 1 Score: 50.1 bits (118), Expect = 1.310e-5
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 MAMSIPPGLKPVTQYVRRAERLDK-APEPEAPVVAYHCRMYATEQAMKLQDNSE 159
            M + IPP LK +T +VRRAE LD+    PE+ VVAY+CR +A +  + L  ++E
Sbjct:    1 MPLKIPPELKKITTFVRRAEELDRDKANPESRVVAYYCRQFAVQAGIPLAASAE 54          
BLAST of mRNA_Ecto-sp13_S_contig63059.17050.1 vs. uniprot
Match: W7TAT1_9STRA (Vacuolar protein sorting-associate Vta1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAT1_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 1.680e-5
Identity = 22/47 (46.81%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   10 SIPPGLKPVTQYVRRAERLDK-APEPEAPVVAYHCRMYATEQAMKLQ 147
            ++PP LK +T ++RRAE LD+    P++ +VAY+CR +A +QAM L+
Sbjct:    9 TVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLR 55          
BLAST of mRNA_Ecto-sp13_S_contig63059.17050.1 vs. uniprot
Match: A0A7S2RMG8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RMG8_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.420e-5
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   13 IPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRMYATEQAMKL 144
            IPP LK VT YVRRA+ +++  +P A V+AY+CR +A E  +K+
Sbjct:    4 IPPDLKAVTPYVRRAKEVEQTGDPRAYVIAYYCRTHAMELGLKI 47          
BLAST of mRNA_Ecto-sp13_S_contig63059.17050.1 vs. uniprot
Match: A0A4D9D241_9STRA (Vta1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D241_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.090e-5
Identity = 22/47 (46.81%), Postives = 35/47 (74.47%), Query Frame = 1
Query:   10 SIPPGLKPVTQYVRRAERLDK-APEPEAPVVAYHCRMYATEQAMKLQ 147
            ++PP LK +T ++RRAE LD+    P++ +VAY+CR +A +QAM L+
Sbjct:    9 TVPPALKKITVFMRRAEELDRDTSHPDSKLVAYYCRTHAMDQAMLLR 55          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63059.17050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LGK3_ECTSI6.370e-32100.00Vta1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
F0YCQ0_AURAN1.350e-644.23Vta1 domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S2LH26_9STRA2.990e-651.06Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2R0K1_9STRA3.730e-647.92Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2LHP1_9STRA7.000e-651.06Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S4D8M6_HETAK7.540e-654.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1ZCU8_TRICV1.310e-546.30Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
W7TAT1_9STRA1.680e-546.81Vacuolar protein sorting-associate Vta1 n=1 Tax=Na... [more]
A0A7S2RMG8_9STRA2.420e-550.00Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A4D9D241_9STRA6.090e-546.81Vta1 domain-containing protein n=1 Tax=Nannochloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63059contigEcto-sp13_S_contig63059:561..728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463875.5670803-CDS-Ecto-sp13_S_contig63059:560..7281681463875.5670803-CDS-Ecto-sp13_S_contig63059:560..728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63059 561..728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63059.17050.1prot_Ecto-sp13_S_contig63059.17050.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig63059 561..728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig63059.17050.1

>prot_Ecto-sp13_S_contig63059.17050.1 ID=prot_Ecto-sp13_S_contig63059.17050.1|Name=mRNA_Ecto-sp13_S_contig63059.17050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MAMSIPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRMYATEQAMKLQD
NSEAG*
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mRNA from alignment at Ecto-sp13_S_contig63059:561..728-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig63059.17050.1 ID=mRNA_Ecto-sp13_S_contig63059.17050.1|Name=mRNA_Ecto-sp13_S_contig63059.17050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63059:561..728- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATGTCTATTCCTCCCGGGCTGAAGCCCGTGACGCAGTACGTGCG CCGGGCGGAGAGGCTGGACAAGGCTCCCGAGCCGGAGGCGCCGGTGGTCG CGTACCACTGCCGGATGTACGCGACTGAACAGGCGATGAAGCTGCAGGAC AACTCCGAAGCAGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63059:561..728-

>mRNA_Ecto-sp13_S_contig63059.17050.1 ID=mRNA_Ecto-sp13_S_contig63059.17050.1|Name=mRNA_Ecto-sp13_S_contig63059.17050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63059:561..728- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATGTCTATTCCTCCCGGGCTGAAGCCCGTGACGCAGTACGTGCG
CCGGGCGGAGAGGCTGGACAAGGCTCCCGAGCCGGAGGCGCCGGTGGTCG
CGTACCACTGCCGGATGTACGCGACTGAACAGGCGATGAAGCTGCAGGAC
AACTCCGAAGCAGGGTGA
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