mRNA_Ecto-sp13_S_contig63.17042.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig63.17042.1
Unique NamemRNA_Ecto-sp13_S_contig63.17042.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig63.17042.1 vs. uniprot
Match: A0A6H5J5H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5H1_9PHAE)

HSP 1 Score: 533 bits (1372), Expect = 1.860e-186
Identity = 289/362 (79.83%), Postives = 291/362 (80.39%), Query Frame = 1 
Query:    1 MHRVALNHGRVLIVAGKTNAARGWSVLSRHGTRRALSDTGVSGGDSGESSAQGGGARGRQKGVGGAGGATQPAG--------------------------------RGRGAFSQFLRTHERKIGKQLRKIDEFPEDDRGGDPASGQFEDSDEGSGPKKFSGTARDEGLLFEEKEPEDDSRSSKSQDDKWQEQWFSHEDKRLDKLGLE-PEGETGGDLPELDDCEEDDHFDPDDEWDDEAWKGYTPEQIEEFKILGARLEEEESKQMADLRRRWKETKADSVKKHGTAEHLELPDIIIKHEITYEAPPGKANADRSMPIPRPVETIVDSMQLPPGLDVTPDDPEYEEVAKMWMTLSRNNTMDE 987
            MHRVALNHGRVL VAGKTNAARGWSVLSRHGTRRALSDTG SGG                       G                                      RGRGAFSQFLRTHERKIGKQLRKIDE PEDDRGGDPASGQFEDSDEGSG KKF+GTARDE LLFEEKEPEDDSRSSKSQDDKWQEQWFSHEDKRLDKLGLE PEGE GGDLPELDDCEEDDHFD DDEWDDEAWKGYTPEQIEEFKILGARLEEEESKQMADLRRRWKETKADSVKKHGTAEHLELPDI+IKHEITYEAPPGKANADRSMP PRPVETIVDSMQLPPGLDVTPDDPEYEEV KMWMTLSRNNTMDE
Sbjct:    1 MHRVALNHGRVLTVAGKTNAARGWSVLSRHGTRRALSDTGDSGG-----------------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRGAFSQFLRTHERKIGKQLRKIDEIPEDDRGGDPASGQFEDSDEGSGTKKFAGTARDEELLFEEKEPEDDSRSSKSQDDKWQEQWFSHEDKRLDKLGLEQPEGEMGGDLPELDDCEEDDHFDADDEWDDEAWKGYTPEQIEEFKILGARLEEEESKQMADLRRRWKETKADSVKKHGTAEHLELPDIVIKHEITYEAPPGKANADRSMPTPRPVETIVDSMQLPPGLDVTPDDPEYEEVVKMWMTLSRNNTMDE 339
[Close]
BLAST of mRNA_Ecto-sp13_S_contig63.17042.1 vs. uniprot
Match: D8LRT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRT9_ECTSI)

HSP 1 Score: 526 bits (1355), Expect = 3.890e-185
Identity = 274/292 (93.84%), Postives = 278/292 (95.21%), Query Frame = 1 
Query:    1 MHRVALNHGRVLIVAGKTNAARGWSVLSRHGTRRALSDTGVSGGDSGESSAQGGGARGRQKGVGGAGGATQPAGRGRGAFSQFLRTHERKIGKQLRKIDEFPEDDRGGDPASGQFEDSDEGSGPKKFSGTARDEGLLFEEKEPEDDSRSSKSQDDKWQEQWFSHEDKRLDKLGLEPEGETGGDLPELDDCEEDDHFDPDDEWDDEAWKGYTPEQIEEFKILGARLEEEESKQMADLRRRWKETKADSVKKHGTAEHLELPDIIIKHEITYEAPPGKANADRSMPIPRPVETI 876
            MHRVALNHGRVL  AGKTNAARGWSVLSRHGT RALSDT VSGG SGESS Q   ARGRQKGVGGAGGATQPAGRGRGAFSQFLRTHERKIGKQLRKIDEFPEDDRGGDP SGQF+DSDEGSG KKF+GTARDEGLLFEEKEPEDD RSSKSQDDKWQEQWFSHEDKRLDKLGLEPEGE GGDLPELDDCEEDDHFDPDDEWDDEAWKGYTPEQIEEFKILGARLEEEESKQMADLRRRWKETKADSVKKHGTAEHLELPDI+IKHEITYEAPPGKANADRSMPIPRPV +I
Sbjct:    1 MHRVALNHGRVLTAAGKTNAARGWSVLSRHGTWRALSDTSVSGGGSGESSGQEXXARGRQKGVGGAGGATQPAGRGRGAFSQFLRTHERKIGKQLRKIDEFPEDDRGGDPGSGQFDDSDEGSGTKKFAGTARDEGLLFEEKEPEDDFRSSKSQDDKWQEQWFSHEDKRLDKLGLEPEGEMGGDLPELDDCEEDDHFDPDDEWDDEAWKGYTPEQIEEFKILGARLEEEESKQMADLRRRWKETKADSVKKHGTAEHLELPDIVIKHEITYEAPPGKANADRSMPIPRPVVSI 292
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig63.17042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J5H1_9PHAE1.860e-18679.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRT9_ECTSI3.890e-18593.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig63contigEcto-sp13_S_contig63:31741..38882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1343
Hectar predicted targeting categorymitochondrion
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_002420.1
Cds size1164
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig63.17042.1prot_Ecto-sp13_S_contig63.17042.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig63 31741..38703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463874.843837-CDS-Ecto-sp13_S_contig63:31740..320041681463874.843837-CDS-Ecto-sp13_S_contig63:31740..32004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63 31741..32004 +
1681463874.855507-CDS-Ecto-sp13_S_contig63:36439..365171681463874.855507-CDS-Ecto-sp13_S_contig63:36439..36517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63 36440..36517 +
1681463874.867262-CDS-Ecto-sp13_S_contig63:36854..370371681463874.867262-CDS-Ecto-sp13_S_contig63:36854..37037Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63 36855..37037 +
1681463874.8761609-CDS-Ecto-sp13_S_contig63:37538..377001681463874.8761609-CDS-Ecto-sp13_S_contig63:37538..37700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63 37539..37700 +
1681463874.8845458-CDS-Ecto-sp13_S_contig63:38073..382531681463874.8845458-CDS-Ecto-sp13_S_contig63:38073..38253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63 38074..38253 +
1681463874.892902-CDS-Ecto-sp13_S_contig63:38406..387031681463874.892902-CDS-Ecto-sp13_S_contig63:38406..38703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig63 38407..38703 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463874.9023063-UTR-Ecto-sp13_S_contig63:38703..388821681463874.9023063-UTR-Ecto-sp13_S_contig63:38703..38882Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig63 38704..38882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig63.17042.1

>prot_Ecto-sp13_S_contig63.17042.1 ID=prot_Ecto-sp13_S_contig63.17042.1|Name=mRNA_Ecto-sp13_S_contig63.17042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=388bp
MHRVALNHGRVLIVAGKTNAARGWSVLSRHGTRRALSDTGVSGGDSGESS
AQGGGARGRQKGVGGAGGATQPAGRGRGAFSQFLRTHERKIGKQLRKIDE
FPEDDRGGDPASGQFEDSDEGSGPKKFSGTARDEGLLFEEKEPEDDSRSS
KSQDDKWQEQWFSHEDKRLDKLGLEPEGETGGDLPELDDCEEDDHFDPDD
EWDDEAWKGYTPEQIEEFKILGARLEEEESKQMADLRRRWKETKADSVKK
HGTAEHLELPDIIIKHEITYEAPPGKANADRSMPIPRPVETIVDSMQLPP
GLDVTPDDPEYEEVAKMWMTLSRNNTMDEVCLAAQCSGLDRWHCLKHNTY
EQLHICVGWSLAVEAVRVFFSLLFPGGCSTRRVFHVP*
back to top

mRNA from alignment at Ecto-sp13_S_contig63:31741..38882+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig63.17042.1 ID=mRNA_Ecto-sp13_S_contig63.17042.1|Name=mRNA_Ecto-sp13_S_contig63.17042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7142bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63:31741..38882+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGAGTCGCGCTGAATCATGGAAGGGTTTTGATTGTTGCTGGCAA
AACAAATGCCGCCAGAGGATGGTCGGTACTCTCACGCCACGGCACCCGGC
GAGCCCTGTCTGACACCGGTGTCAGCGGTGGAGACTCGGGAGAGAGCTCT
GCGCAAGGAGGTGGCGCAAGGGGAAGGCAGAAAGGAGTAGGGGGTGCAGG
AGGGGCCACCCAGCCCGCGGGCCGGGGCCGTGGAGCATTCAGCCAGTTCC
TGAGGACACACGAGGTGATGTATTGCGGCTGTAGTCTTTGATGAGGTTTG
CGATGTGCGATGCTTCTACTACTTTGTCAGACCGCCACTCTGATGTGCTG
CGAGCCGTCACACACACTTAAACGTTGATGTATGCTTTCCAACAGCAGGT
GCACGGCTGAGATCAACACAGTACAGCAGTACAAGAACCAATGAAATAAT
CAACTGAATGATTACAACTGGACTGGCTGCTAACGTTGGTGCAGCCAGTC
GGGTACAGGAAGATGAGGCTGGTGTACACCAGTACTGAATTCTACACGTG
GCAGTTGCTGTCAGCTGGCAGGCATACGCATACATATCTACAGAGCACGG
AGCCAAGACTTCATAGTGCCGCATCTTCTTGCCTCCAACGATCCAACAAG
CACAGCAGTAGCGCAGCTTAGGGTCGTGGTATGAGTGTTCATCGTGGAAG
AAGTATTGGTGATGACCTCCCATGTTGTTGCTCCCAATTGCTTTTTCAGG
AAAAATGCTAATAATCACAGCGTTTCGTATTGCAACACATCGCTTTGCCC
TAATCCGTGCATGGTCTATGCGCTCAGGTCGGGCGTCGCACAGCGCGTTT
CCTGTGATGTGGAGTGACATCAATACCTTGTGCAGGAAAACCATAATCGG
ACTTTGGCTTGGGATGTGGTATGCATACTGCTGGTTAACCCTCCTAGTAC
CAAGTCGCTCAAAGAATCTAAGCTCCTTGACAGTTCCTCCAAACAATATA
ACGTGTTGAACAAATACTTCTACACAGCAGTAGAAGTCGCAAAACCACTC
GTCGCCCTGTCAACGCAACAGCAGTATGCTGTTCGTTCATGGTCTTGCCT
CCGCTACACCTGGGGATGGCGATTTGTCCCCGCCTGAATCTTGAACACAC
TTCCTTCGTCAATGGCACATTTGTAAATCGAGAACCAGGTGTGTCCTTAA
CCGAGGTTCGACTGTACCAAGTACACTTACATTGAGTTTAATTTCCCACT
GAACGCACAAGAACGTACTATTATACTTAAAAGCAGAACTGTTCACAACG
TAGAAGAACGTGCTACTAGAACTGGCTTGTACATACTTCAAATCCGACAG
TAGATGGAAATACACTGCAAGGGTTTGTAGCATCGGAAGATCGAACGGGA
GCATATGGTGTTAGAAAAGGGTTTGCTTGGTAACGGTTTATTAGGTGGGC
ACATTTTCGGCGGCAACCCCACACGGTGGTAGTTTTTTTGGCGGTGGACG
AAATATGCATGTTTAGGCAGTACCGACTTGGGCGGAGGCGGTAAAATCGA
CAAAACGGCGTTAAACCGGCGATATCGGAATTTTTACAGCGGCAAAGTTC
CCGAGTTCATCCTTGGCACTTCACTGAAAGAAAGTTTCGGGGATGCTCGC
AACTGTTGTACAATACCATACCCTTTCCCGCACTCTCGTACGTATCTACA
AAATCGTGGTGTGAACACTCTTTTCCCGGCATGTTGCTTGCTGGGTTCAT
TTTTTTATCATACCTCGGGTACTGTTCCATCGGATCCTAGAACTCAACAC
AAGCCGGGCAGAGATTTGGAAGTCTTACAAAACTCACAGAAGTATCGGGT
AGGTTATTCGGAAAACACGACTCTCGGAAGGATCGGTAGGGGTAGTGAAG
GGTCACAGAACTCACACCAGCGTCGGGTATAATTTTCCAAGGGTGCGTTC
GGTAAGGTACTACCGAAGCGTACCGCCGGTCAATACCGCCGGTACTTACC
GTACCGAGCGTCTCGGTATGCTTTGGTAATATTTCAATACCTTACCGAAA
ATCTCGGTATACTTAATTACTTTTTCAATGCCTTACCGAAAATCTCGGTA
TACCCTTGGCGAATACCGAGGGTAACGGTAAATATTTCGGAAATATCTCA
ATACCTTACCGACACTGTGACGTCACTCTTTCCACTAACCACTCACCACA
CAAGAACTGCTGTACCCCTACCGAAGTTGAAATTCGAACATCGAACACAC
TTCTGCTGCACCCAACCGGACATCACAAGACTGTGCACGTCTGGGTACAC
GCGGTAGTATACCGAGCACCATGAGCAGTGAGGCAACCTCCCAGAGTGAG
GGAGGGGGGTGCCAGCGGTGCCGACCCTGGTTCTGGCGTCAATTTCTCTT
CGCGAGCCCCGACGACACCACCAGAGGTTGTGGAGATCTCACAGGGAAAC
AGAGTGCCTACGATCAAACCAGCGATCGTCTACAGCACGCAGGGGGAGGA
GTGCAACGTGAGGAGTGCAACGTGCCAGTCGTCACCATCACATCCGTCGA
CGATTTCACTGTGCCGACCGGTTATAAGAGAGTAGGAACACGTCAAGCGT
CTTTCATGTACTCGGTTGGAGTCGTGGAACGGATCGACAAGCAAGACAAG
ACCAAGTCCCCCAAAGTACTTCTGCCTAGCCGACTCCACCTACGGTACGA
AGAAGGAAGAGAATAGGACGTTTCGACCGAGTCATACCGCCAGTAAATAC
CGCCGGTAATTTAATAGGGATGTTTACGATTCGACCGAGGCATACCATAC
CGAGCGTTTCGGTATGCTTTGGTAATATCTCGATACCTTACCGAAAATTT
CGTAACGCTTCGGTAATATCTCAATACCTTACCGAAAATCTCGGTGTACT
TCGGTCCTCTTTCAATACCTTACAGAAAATCTCGGTATACTTCGGTACTT
TTTCAATATCTTACCGAAAATCTCGGTATAACCTTGGTAAATACCGAGGG
TACGGTAAATACTTCGGTAATATCTCGATACCTTACCTAAAATCTCGGTA
TACTTCGTTACTTTTTCAATACCTTGCCGAAAATCTCGGTATGCGTCGGT
ATTTTTTCAATACGTTACCGAAAATCTCGGTACGCCTCGGTACTTTTTCA
ATACCTTACCGAAAAAACCTGTACCTTACCACACACACCCTTGTAATTTT
CCCTCCCGCATGCCTCTGCACGTGCCTTACAAGTCATACTCTTTGAAATA
CGAGACATGCACTTTTTGAGATCACGTTGTCATTTGTTTGAAAAAGAACG
ATTACTGTAGAAAATCAATTCGACCGACCTGCAGCTATGGGAAATCGAAA
TCGGCAAGTGAACGTAACCCGTCCCGAGTCTGAAGAACGTCTCGTGGCGT
CTTGCGCCGTGGGTTGTGCATCTGCGTTGTTCAATCGGCAACTGAAATCT
GCTCACAGCAACTCATCGTCGCACTATCTTGTGTGTAACCCACCCCGCGA
AGTATTTACTTGCCATACAGTCTTGCGTCTAGCCAATGAGCTTGTATGCG
TAGATCCAAGGTCGTACAGGATAGCTGCTCAGCAGCTGTATGTTGACGAA
TAGGAACATTCTACAGCAGTATGCGTTGTATCATGCACGAAGTTCGGAAT
CGAATGCTGCAAAGTGGCCCACCTGAATTACAGAAGCGTATACTATTACA
AGGCCTTCCTCCGGGGTGTGTTAAGAGAGCACCGCGGCAGGGAGTGATGC
AAGAACATGCAATAAGTAAACAGAGGAAAAACAGATAATCGTAGATATGC
ATTATGACAGACTAAAAGGGTTTACGCCGTTGTTGGGAGCTCGGCACGGG
AGTTTTACTCGACAAGAGATCCTTCTGTGGAATTTTGGCTGCAAGAACAG
CACGCGAACAGTTTGTTTCGCCCACGTGCAAATCTCTTGAGGGCATCCGA
CCCTCGTACCTAAAGAGCTCACCCTTCTCTGCGCCTCTATACCTAAGGTT
CTGAACCTGAGGCTCAGCGGTCTGCACGGCGGTGTGCATTGCTCCAGCAT
TGCTCTGCACCTCTGCTGACACCGCCACGGCATGGGTCGACTGCTGGAAA
CTACATGTTTCTGCTTGCTGCCTTAATTCAGGAGTCGGAATCACGCATGT
GTGGGTATTGTATGTATAGTCTTGGTATGTGTGCCGCATGCGCAAATACG
TATGTGCAACAATTGAAAGAAGAGGCATGCGGCGGTACTAGACCATGAAA
GACGGACCCAATATTTCTCGGAATGTGCGGAGTTCGAAAACCCTCTCGTG
CCCCGCCCGCACGTACAGGCGGATACGCTCGCTCCGCAGCCGCTCTGACA
GCTGCCGCGTCAACGCTCAGCTGTTGCTATGTGCTGATGTGCCACTGCTG
TTCAACTTCAGAAACAGCTGCTCTGCCGTTTTTGTTGCGTGGCCAATCAG
CAGCCAAAGAGAATCAGTTCACAGCCTTCTAACAACCCGATTTCTTGAGA
TTCTGGGGAAAGATAAACAAATCAGGACTTACTTAGTCTTAAAAAGAAGC
ATTTATCGGAATTTTGGATTCATATGCACAAGCCTGCCTTCCTCGGACAG
CAGTATAGGAGTATCGCGGATGGACTAAATATGTCAGTGGTGAGCGCTCT
TGACAACTTGCTGTCTGTTTGCTTGTCCGTCCTTCTGTTCGGTTATCAGC
GGAAAATCGGCAAGCAGTTGCGGAAGATCGACGAGTTCCCGGAGGATGAC
CGTGGAGGGGACCCCGCCAGCGGGCAGGTACTCTTAGTAAAGGGCGGGAC
GGGTATTTTATCGTTTCATCCTAGACCTCTATATCTGGGCTTCTGTGACT
TTAAATTTGTCTTGGTAGCATCTTCTGTGTGAACCCAAGCATGTGAAATG
TGTATGGGCCTGTGGTGGTGTTTTGAACAAACTTGTACCTGCGTCCACTA
CGTTGCCGATTATATTTTCGGGTACCTTGCTTGAAATGTGGCTACCATTG
CGGAGGGTGCACACAGCGCGCGGGAATACGTGCGTGCCTACCATCCCGGA
ATACGTGCCTGACTTTGTCACGCTCGGCATCGCGCACCCCCTTCACCCGG
CGTTATGGATGCAGTTTGAGGACTCCGATGAAGGTTCAGGCCCTAAAAAG
TTCTCGGGGACCGCGAGGGATGAAGGGTTATTATTCGAAGAAAAGGAACC
TGAGGACGACTCTAGGTCGTCCAAGTCGCAAGACGATAAATGGCAAGAAC
AATGGTTTTCGCACGAAGACAAGAGGTTGGACAAGTTGGGCTTGGAGGTA
AGGCAAAATGCAGAATGACAGCGTTTCTTGTTGGGTAATTCGCTTGGCAG
GGTCGGTGGTCTCTATGGCAATGCAAGACATCAGCGGCCTGCTCGAAAGA
ACGCAAGCCAGAAGAGTTCGAGGCCCAGATATTTGAAAGAATGATAGTTT
CGGCCAAGGAATTGGGCTAATTTGCCCGCGCCGCGTTAAAAACCCTGGCA
CTTGCTCCTGTAGCTCGGTGATTTTACAAGTGTATATAGCCTGTTGGTTT
GGTGTCAAACCTCCGCCTGAATAAGGGTGCTTCTGTTCAGCCGTGCTGTT
TAGTCTGTGGTTTGTTCTCAAGAGCCGGTGACGCGCGTACGTGCGTGGTG
CCATTTTGGGTGCCCTTTGGGGGCCACTCTCGTTTCTCATCACAGCAGCA
GATACCATGCCCTCACCCAAGACTTCCACCTCACCCCTTCCCCACTTGGG
TATGTTATTGGGGGGTTACGTTGGTCTAACCCTTCCATCATACAACAGCC
TGAAGGAGAAACGGGAGGAGACCTACCTGAACTTGACGACTGTGAGGAAG
ATGACCACTTTGATCCTGACGACGAGTGGGACGACGAGGCCTGGAAAGGG
TACACTCCAGAGCAAATCGAAGAGTTCAAGATACTGGGTGCCAGACTCGA
GGAAGAGGAGGTAAATCGTCTCGAAAATAGTCTCCAGGTGCACACCGTTG
CCGACGCCGTGATGTTCGTGTTGACTAGCTTGACTAATTTCAAGTTCGCA
CGGTGCGCTTTTCGCACACATCAAAATTACTGCTGAAATGCGAACGCAGA
TTATTTTTTGAGTGGACACCAAGAGACAGCCAAAGGTTACCAACCGATTG
AATCATGTGTCAACAGGTGATGAATGTGAAATACGGTGCCACAGGGAAAT
AGTGCGGCAACCTTAAAACGAAGCAACATGTTATCGGAAACTTGCACTCC
GACTGCTTATTAAGCATCACCGCCCAGCTGAACCTGGTTGTACCCTTCCG
TTGTCTTACCCCACCCCCTTGGGGTATTTACAGAGCAAGCAGATGGCAGA
CTTGCGCAGGAGGTGGAAGGAGACCAAGGCAGACTCAGTGAAGAAACACG
GAACTGCGGAGCACCTAGAATTACCGGATATCATAATCAAGCACGAGATC
ACATACGAAGCACCTCCGGGGAAGGCCAACGCAGACCGCTCCATGCCAAT
ACCACGCCCAGTGGTCAGTATTTTCATACCTTACTCCGTTGTGGAACAGG
GATGAGCTTCTCCTGCTTTGAAAGGGAAACCCTGGCGTGCGTGCTTTTTT
GTCGTATCGTGGAGACACTCGCTGTGCCGCGCTTGAAGCTTGTTGCCGTC
GCACATTTTAATTCAGGAAACAATCGTCGACAGCATGCAGCTTCCCCCTG
GCCTCGACGTGACGCCGGACGACCCAGAGTACGAGGAGGTGGCAAAGATG
TGGATGACCTTGTCCCGCAACAACACCATGGACGAGGTGTGTCTTGCCGC
CCAATGCTCTGGACTTGACCGTTGGCATTGCTTGAAACACAATACGTATG
AACAGTTGCACATTTGTGTTGGCTGGTCGTTAGCAGTGGAGGCTGTTCGG
GTGTTCTTTTCCCTTCTGTTTCCTGGCGGCTGTTCGACTCGGAGAGTCTT
TCATGTTCCTTGAAGCAGTAACATTCTTTCTAATCTTTCTGGCACATCAG
TACAGTAGTTGCGGGTAGAACAACAGCGAAGAACACCTTGCTTGGTCACA
GGTATCCGTGTTATAGCAGTTTCGAAAACGCACACGTCTGTATTCCGTGC
TTCCGCACGCTGGAGGAACACAACAAGCACGCCCGCCCGCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig63:31741..38882+

>mRNA_Ecto-sp13_S_contig63.17042.1 ID=mRNA_Ecto-sp13_S_contig63.17042.1|Name=mRNA_Ecto-sp13_S_contig63.17042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1164bp|location=Sequence derived from alignment at Ecto-sp13_S_contig63:31741..38882+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGAGTCGCGCTGAATCATGGAAGGGTTTTGATTGTTGCTGGCAA
AACAAATGCCGCCAGAGGATGGTCGGTACTCTCACGCCACGGCACCCGGC
GAGCCCTGTCTGACACCGGTGTCAGCGGTGGAGACTCGGGAGAGAGCTCT
GCGCAAGGAGGTGGCGCAAGGGGAAGGCAGAAAGGAGTAGGGGGTGCAGG
AGGGGCCACCCAGCCCGCGGGCCGGGGCCGTGGAGCATTCAGCCAGTTCC
TGAGGACACACGAGCGGAAAATCGGCAAGCAGTTGCGGAAGATCGACGAG
TTCCCGGAGGATGACCGTGGAGGGGACCCCGCCAGCGGGCAGTTTGAGGA
CTCCGATGAAGGTTCAGGCCCTAAAAAGTTCTCGGGGACCGCGAGGGATG
AAGGGTTATTATTCGAAGAAAAGGAACCTGAGGACGACTCTAGGTCGTCC
AAGTCGCAAGACGATAAATGGCAAGAACAATGGTTTTCGCACGAAGACAA
GAGGTTGGACAAGTTGGGCTTGGAGCCTGAAGGAGAAACGGGAGGAGACC
TACCTGAACTTGACGACTGTGAGGAAGATGACCACTTTGATCCTGACGAC
GAGTGGGACGACGAGGCCTGGAAAGGGTACACTCCAGAGCAAATCGAAGA
GTTCAAGATACTGGGTGCCAGACTCGAGGAAGAGGAGAGCAAGCAGATGG
CAGACTTGCGCAGGAGGTGGAAGGAGACCAAGGCAGACTCAGTGAAGAAA
CACGGAACTGCGGAGCACCTAGAATTACCGGATATCATAATCAAGCACGA
GATCACATACGAAGCACCTCCGGGGAAGGCCAACGCAGACCGCTCCATGC
CAATACCACGCCCAGTGGAAACAATCGTCGACAGCATGCAGCTTCCCCCT
GGCCTCGACGTGACGCCGGACGACCCAGAGTACGAGGAGGTGGCAAAGAT
GTGGATGACCTTGTCCCGCAACAACACCATGGACGAGGTGTGTCTTGCCG
CCCAATGCTCTGGACTTGACCGTTGGCATTGCTTGAAACACAATACGTAT
GAACAGTTGCACATTTGTGTTGGCTGGTCGTTAGCAGTGGAGGCTGTTCG
GGTGTTCTTTTCCCTTCTGTTTCCTGGCGGCTGTTCGACTCGGAGAGTCT
TTCATGTTCCTTGA
back to top