mRNA_Ecto-sp13_S_contig6294.17034.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6294.17034.1
Unique NamemRNA_Ecto-sp13_S_contig6294.17034.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6294.17034.1 vs. uniprot
Match: A0A6H5KJ99_9PHAE (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJ99_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.130e-65
Identity = 109/116 (93.97%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:   46 MMTKFGRIALCLLSFKGGSQSFTLRAHSAIRRAPVGRERVDCGGIGGGGVILNKSGYSARSRLSSSVIVDVESTSTDEPVEDLKARLLRASAGVNRGLSCREGDQEEILEIVEELE 393
            MM +FGRIA CLLSFKGGSQSFTLRAHSA+RRAPV RERVDCGGIGGGGVILNK+GYSARSRLSSSVIVDVESTSTDEPV DLKARLLRASAGVNRGLSCREGDQEEILEIVEELE
Sbjct:    1 MMKRFGRIATCLLSFKGGSQSFTLRAHSAVRRAPVRRERVDCGGIGGGGVILNKTGYSARSRLSSSVIVDVESTSTDEPVGDLKARLLRASAGVNRGLSCREGDQEEILEIVEELE 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6294.17034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ99_9PHAE1.130e-6593.97PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6294contigEcto-sp13_S_contig6294:6959..8101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score216.5
Seed ortholog evalue7.6e-54
Seed eggNOG ortholog2880.D7FJD3
Model size393
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to acid chemical
EggNOG OGs28JPH@1,2QS2T@2759
Ec32 ortholog descriptionPAP fibrillin
Ec32 orthologEc-14_005910.1
Cds size393
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463873.7207663-CDS-Ecto-sp13_S_contig6294:6958..70521681463873.7207663-CDS-Ecto-sp13_S_contig6294:6958..7052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6294 6959..7052 +
1681463873.7320888-CDS-Ecto-sp13_S_contig6294:7443..76281681463873.7320888-CDS-Ecto-sp13_S_contig6294:7443..7628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6294 7444..7628 +
1681463873.7425807-CDS-Ecto-sp13_S_contig6294:7987..81011681463873.7425807-CDS-Ecto-sp13_S_contig6294:7987..8101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6294 7988..8101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6294.17034.1prot_Ecto-sp13_S_contig6294.17034.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6294 6959..8101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6294.17034.1

>prot_Ecto-sp13_S_contig6294.17034.1 ID=prot_Ecto-sp13_S_contig6294.17034.1|Name=mRNA_Ecto-sp13_S_contig6294.17034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
AVYPVELGLPNSNRVMMTKFGRIALCLLSFKGGSQSFTLRAHSAIRRAPV
GRERVDCGGIGGGGVILNKSGYSARSRLSSSVIVDVESTSTDEPVEDLKA
RLLRASAGVNRGLSCREGDQEEILEIVEELE
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mRNA from alignment at Ecto-sp13_S_contig6294:6959..8101+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6294.17034.1 ID=mRNA_Ecto-sp13_S_contig6294.17034.1|Name=mRNA_Ecto-sp13_S_contig6294.17034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1143bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6294:6959..8101+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGTGTATCCTGTTGAGCTTGGATTGCCCAACAGCAATCGTGTGATGAT
GACGAAGTTCGGAAGAATAGCATTGTGCCTGCTTTCCTTCAAAGGTAAGC
GTTGGTTCGGTCTCTGTGTCTCTCACCAGCATCTCGCTGTCAGATATTGC
GTCGACTGCACTCCAGCAGCAGCAAGCAGTCATGTCAACACAAGAACCCC
ATGCTGTTTGTTGTGCACATGCTCTTCAGCGTATGAGATAATTCATTGAG
CGAACTCAAACAGACCCCCCCCCCCGACATAATCCCAGACTCAATGCTAC
TGCTGTACGTTCCTGGTTGTCTCCAAAGGACCCCTTGGAGGCTTACCGTC
GACAAGAAGATCAGTGTACTTCGTACGCCTTGCCGTTGCTGGGTGGTACA
CATGCCAGAATGCCTGCATCTTGTACCGAATTTAGCGCCCTCATTTAATG
CTCCCTCTCCTGTTCTTTCAACTAAACGTTCGAAGGAGGGTCTCAATCGT
TCACTCTCCGAGCCCATTCCGCGATTCGACGGGCACCAGTGGGAAGGGAA
AGGGTGGATTGTGGTGGTATTGGTGGGGGTGGAGTTATCTTGAACAAGTC
CGGTTACTCGGCAAGGTCGCGACTCTCGTCGTCCGTCATCGTGGACGTTG
AAAGCACGTCCACTGACGAGGTGAGTGGGTCTTTTCCTTGGACTTGGGAC
TGCTGTAGTGTAAGCCACAGGACCCAGGCCGTGGTTTGATACACACGCGA
GAATGATATTGAGTCTCGCAGAACAGGCTTGCTGTGTTAAAAAGGACCAA
CAAACGATTGGCAAAGGCAAATTATGGCTGCTGCTGCTGCTGCTGCTGCT
TGTGCAAAGTCTAGGACAAGCTTTACATAGACTACGGGGGATGGGCTTGA
GAACGGAGCCCCTTGCCGTGTGTGCTCTAGTTATATCTAGTTTGGAGTAG
CTCCGATACTGGACTTGCACGCCACGGAAGAATCTTCAATGTCGGCTCTT
GTTATTTTTCGTTGAAACTGCTTTCTCAGCCCGTGGAAGATCTGAAAGCG
AGGCTCTTGAGGGCATCCGCGGGTGTAAATAGAGGGCTCAGCTGCCGAGA
GGGAGACCAGGAGGAAATTTTGGAGATCGTGGAAGAGCTCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6294:6959..8101+

>mRNA_Ecto-sp13_S_contig6294.17034.1 ID=mRNA_Ecto-sp13_S_contig6294.17034.1|Name=mRNA_Ecto-sp13_S_contig6294.17034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6294:6959..8101+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGTGTATCCTGTTGAGCTTGGATTGCCCAACAGCAATCGTGTGATGAT
GACGAAGTTCGGAAGAATAGCATTGTGCCTGCTTTCCTTCAAAGGAGGGT
CTCAATCGTTCACTCTCCGAGCCCATTCCGCGATTCGACGGGCACCAGTG
GGAAGGGAAAGGGTGGATTGTGGTGGTATTGGTGGGGGTGGAGTTATCTT
GAACAAGTCCGGTTACTCGGCAAGGTCGCGACTCTCGTCGTCCGTCATCG
TGGACGTTGAAAGCACGTCCACTGACGAGCCCGTGGAAGATCTGAAAGCG
AGGCTCTTGAGGGCATCCGCGGGTGTAAATAGAGGGCTCAGCTGCCGAGA
GGGAGACCAGGAGGAAATTTTGGAGATCGTGGAAGAGCTCGAG
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