mRNA_Ecto-sp13_S_contig62872.17028.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62872.17028.1
Unique NamemRNA_Ecto-sp13_S_contig62872.17028.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62872.17028.1 vs. uniprot
Match: D7FZZ0_ECTSI (2'-phosphotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ0_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 4.260e-24
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 IREDGLRCMNRTHIHFAAGLPGESGVISGMRKACKVLIYVDVAAAMSDGV 150
            IRE+GLRCMNRTHIHFAAGLPGESGVISGMRKACKVLIYVDVAAAMSDGV
Sbjct:  188 IREEGLRCMNRTHIHFAAGLPGESGVISGMRKACKVLIYVDVAAAMSDGV 237
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BLAST of mRNA_Ecto-sp13_S_contig62872.17028.1 vs. uniprot
Match: A0A6H5L3C1_9PHAE (2'-phosphotransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C1_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.040e-22
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 IREDGLRCMNRTHIHFAAGLPGESGVISGMRKACKVLIYVDVAAAMSDGV 150
            IRE+GLRCMNRTHIHFAAGLPG SGVISGMRKACKVLIYVDVAAAM DGV
Sbjct:  163 IREEGLRCMNRTHIHFAAGLPGASGVISGMRKACKVLIYVDVAAAMLDGV 212
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BLAST of mRNA_Ecto-sp13_S_contig62872.17028.1 vs. uniprot
Match: UPI001BB2A7E5 (tRNA 2'-phosphotransferase 1-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2A7E5)

HSP 1 Score: 75.9 bits (185), Expect = 1.070e-15
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 IREDGLRCMNRTHIHFAAGLPGESGVISGMRKACKVLIYVDVAAAMSDGV 150
            IR +GLR MNRTHIHFA G PG  GVISGMRK+C+++I++D+ AAM DG+
Sbjct:  113 IRREGLRRMNRTHIHFAQGEPGADGVISGMRKSCQIMIFIDLHAAMQDGI 162
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BLAST of mRNA_Ecto-sp13_S_contig62872.17028.1 vs. uniprot
Match: UPI00072DD0DA (tRNA 2'-phosphotransferase 1 n=1 Tax=Poecilia latipinna TaxID=48699 RepID=UPI00072DD0DA)

HSP 1 Score: 73.2 bits (178), Expect = 2.000e-15
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 IREDGLRCMNRTHIHFAAGLPGESGVISGMRKACKVLIYVDVAAAMSDGV 150
            I + GL CMNRTHIH + GLPGE G+ISGMRK C + +++DV+ A++DG+
Sbjct:   31 IHQQGLSCMNRTHIHLSTGLPGEDGIISGMRKNCDLAVFIDVSRALADGI 80
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BLAST of mRNA_Ecto-sp13_S_contig62872.17028.1 vs. uniprot
Match: A0A3B5KDI8_TAKRU (2'-phosphotransferase n=3 Tax=Takifugu TaxID=31032 RepID=A0A3B5KDI8_TAKRU)

HSP 1 Score: 75.5 bits (184), Expect = 2.370e-15
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 IREDGLRCMNRTHIHFAAGLPGESGVISGMRKACKVLIYVDVAAAMSDGV 150
            I++ GL CMNRTHIH A GLPGE GVISGMRK C + +Y+D+  A++DG+
Sbjct:  141 IKQQGLSCMNRTHIHLAPGLPGEDGVISGMRKDCDLAVYIDILKALADGI 190
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BLAST of mRNA_Ecto-sp13_S_contig62872.17028.1 vs. uniprot
Match: A0A671N1J7_9TELE (2'-phosphotransferase n=12 Tax=Cyprinoidei TaxID=30727 RepID=A0A671N1J7_9TELE)

HSP 1 Score: 74.7 bits (182), Expect = 4.390e-15
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 IREDGLRCMNRTHIHFAAGLPGESGVISGMRKACKVLIYVDVAAAMSDGV 150
            IR  G+  MNRTHIH A GLPGE GVISGMR++C + +Y+DVA AMSDG+
Sbjct:  137 IRSQGISRMNRTHIHLAPGLPGEGGVISGMRQSCDLAVYIDVAKAMSDGI 186
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BLAST of mRNA_Ecto-sp13_S_contig62872.17028.1 vs. uniprot
Match: A0A0L0TA52_ALLM3 (2'-phosphotransferase n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0TA52_ALLM3)

HSP 1 Score: 74.7 bits (182), Expect = 8.530e-15
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 IREDGLRCMNRTHIHFAAGLPGESGVISGMRKACKVLIYVDVAAAMSDG 147
            IREDGLR M+R H+H A GLPG+SGVISGMR+AC V +++DVA AM DG
Sbjct:  186 IREDGLRPMSRHHVHCAKGLPGDSGVISGMRRACDVHVFIDVAKAMGDG 234
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BLAST of mRNA_Ecto-sp13_S_contig62872.17028.1 vs. uniprot
Match: UPI001864CE56 (tRNA 2'-phosphotransferase 1 n=1 Tax=Megalops cyprinoides TaxID=118141 RepID=UPI001864CE56)

HSP 1 Score: 73.9 bits (180), Expect = 9.180e-15
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 IREDGLRCMNRTHIHFAAGLPGESGVISGMRKACKVLIYVDVAAAMSDGV 150
            IR  GLR MNRTHIH A GLPGE GVISGMR+ C + +YVDV  A+SDG+
Sbjct:  138 IRSQGLRRMNRTHIHLAPGLPGEGGVISGMRRNCDLAVYVDVHKALSDGI 187
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BLAST of mRNA_Ecto-sp13_S_contig62872.17028.1 vs. uniprot
Match: UPI001E67033F (tRNA 2'-phosphotransferase 1-like isoform X1 n=2 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E67033F)

HSP 1 Score: 72.8 bits (177), Expect = 1.560e-14
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 IREDGLRCMNRTHIHFAAGLPGESGVISGMRKACKVLIYVDVAAAMSDG 147
            I+E GL  M RTHIHFA GLPGESGVISGMR +C++LIY+D+A A+  G
Sbjct:  114 IKEQGLSRMKRTHIHFAPGLPGESGVISGMRSSCQILIYLDLAKALKAG 162
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BLAST of mRNA_Ecto-sp13_S_contig62872.17028.1 vs. uniprot
Match: A0A8J5MXN4_HOMAM (2'-phosphotransferase n=2 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5MXN4_HOMAM)

HSP 1 Score: 71.6 bits (174), Expect = 2.240e-14
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 IREDGLRCMNRTHIHFAAGLPGESGVISGMRKACKVLIYVDVAAAMS 141
            I++ GL  MNRTHIHF  G PGESGVISGMR +C++LIYVD+A A+S
Sbjct:  115 IKQQGLSRMNRTHIHFTPGAPGESGVISGMRSSCEILIYVDLAKALS 161
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62872.17028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZZ0_ECTSI4.260e-2498.002'-phosphotransferase n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5L3C1_9PHAE2.040e-2294.002'-phosphotransferase n=1 Tax=Ectocarpus sp. CCAP ... [more]
UPI001BB2A7E51.070e-1566.00tRNA 2'-phosphotransferase 1-like n=1 Tax=Lytechin... [more]
UPI00072DD0DA2.000e-1558.00tRNA 2'-phosphotransferase 1 n=1 Tax=Poecilia lati... [more]
A0A3B5KDI8_TAKRU2.370e-1562.002'-phosphotransferase n=3 Tax=Takifugu TaxID=31032... [more]
A0A671N1J7_9TELE4.390e-1566.002'-phosphotransferase n=12 Tax=Cyprinoidei TaxID=3... [more]
A0A0L0TA52_ALLM38.530e-1569.392'-phosphotransferase n=1 Tax=Allomyces macrogynus... [more]
UPI001864CE569.180e-1568.00tRNA 2'-phosphotransferase 1 n=1 Tax=Megalops cypr... [more]
UPI001E67033F1.560e-1467.35tRNA 2'-phosphotransferase 1-like isoform X1 n=2 T... [more]
A0A8J5MXN4_HOMAM2.240e-1468.092'-phosphotransferase n=2 Tax=Homarus americanus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62872contigEcto-sp13_S_contig62872:16..787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score88.2
Seed ortholog evalue1e-15
Seed eggNOG ortholog2880.D7FZZ0
Preferred nameERI3
Model size150
KEGG koko:K03037,ko:K05544,ko:K08876,ko:K10669,ko:K14007,ko:K18416,ko:K18418,ko:K20407
KEGG Pathwayko03050,ko04141,ko04150,ko05169,map03050,map04141,map04150,map05169
KEGG ModuleM00341,M00404
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000215,GO:0000394,GO:0001932,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005886,GO:0006139,GO:0006259,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016020,GO:0016070,GO:0016441,GO:0016458,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0031047,GO:0031323,GO:0031399,GO:0032268,GO:0034470,GO:0034641,GO:0034660,GO:0035194,GO:0040029,GO:0042325,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045859,GO:0046483,GO:0048519,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051252,GO:0051338,GO:0051604,GO:0060147,GO:0060255,GO:0060966,GO:0060968,GO:0065007,GO:0065009,GO:0070920,GO:0071704,GO:0071944,GO:0080090,GO:0090065,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097428,GO:0106035,GO:0140098,GO:0140101,GO:1900368,GO:1901360,GO:1901564
Exons2
EggNOG free text desc.tRNA 2'-phosphotransferase activity
EggNOG OGsCOG1859@1,COG5018@1,KOG0542@2759,KOG2278@2759
EC1.3.1.89,2.7.1.160
Cds size126
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03016,ko03019,ko03036,ko03051,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463873.3010461-UTR-Ecto-sp13_S_contig62872:15..391681463873.3010461-UTR-Ecto-sp13_S_contig62872:15..39Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig62872 16..39 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463873.3153055-CDS-Ecto-sp13_S_contig62872:39..1201681463873.3153055-CDS-Ecto-sp13_S_contig62872:39..120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62872 40..120 +
1681463873.3264768-CDS-Ecto-sp13_S_contig62872:742..7871681463873.3264768-CDS-Ecto-sp13_S_contig62872:742..787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62872 743..787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62872.17028.1prot_Ecto-sp13_S_contig62872.17028.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62872 40..787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62872.17028.1

>prot_Ecto-sp13_S_contig62872.17028.1 ID=prot_Ecto-sp13_S_contig62872.17028.1|Name=mRNA_Ecto-sp13_S_contig62872.17028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
MNRTHIHFAAGLPGESGVISGMRKACKVLIYVDVAAAMSDGV
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mRNA from alignment at Ecto-sp13_S_contig62872:16..787+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62872.17028.1 ID=mRNA_Ecto-sp13_S_contig62872.17028.1|Name=mRNA_Ecto-sp13_S_contig62872.17028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=772bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62872:16..787+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCGAGAGGACGGGCTCCGTTGCATGAACCGGACACACATACACTTCGC
GGCGGGGCTGCCCGGAGAAAGCGGGGTCATCAGCGGCATGCGCAAGGCCT
GCAAGGTGGGGCATCAGGCCGTCGATACTGCATCCAGCCCGAGCCGTAGC
TGACATAAGATATCACACACCCTAGGACCCACTTTCACTACTCCACGACG
AAGATGATGGCACAGTCAAATAAGTGGGTTTCGGAAAGCTCTCGGCGAGA
CGATTCCAAGGTCGCCATTTTCGGCACTCCCCCTCGTTCTGCTGTGGAGT
GATCGTGCCATGAAAATCGGTCCAGAGGATATGATATCATGTGTAACCTA
CGAAATTTCGTAGCTTATACTCCCCCCAGCCAGCTCTCAAGCGTCGGCCT
CCGCTTCTTGTTGTGGTCGAGAGAGCCCCTTTGTGTTATCTCCAACGCTG
TGTCATTAGTCGTTTCCGGTCACTGCTTGCTTCATCCCGTCCCTTGTTGC
TGTCAAGGAAGCTTGCCTCGTACCGTGGAATCCGACAGGGCTGAATGGAT
GGTGGCAGCTGTCCCTAACCCTGACGTACTCGAGCTATCTCTGACCTCAA
CGTACTCAAGTGATGCCTCTCGCTGATCCCTAACCTTAAAGTACTCAACT
ATCCTGAGCCTTGACGTACTCAAGTGGTGCCTCTCGCTGCCGCTGCTGGG
CTGCCACTCCGCTTGCTTGGTGAACAGGTGTTGATTTACGTGGACGTGGC
CGCGGCAATGTCGGACGGAGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62872:16..787+

>mRNA_Ecto-sp13_S_contig62872.17028.1 ID=mRNA_Ecto-sp13_S_contig62872.17028.1|Name=mRNA_Ecto-sp13_S_contig62872.17028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62872:16..787+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCGGACACACATACACTTCGCGGCGGGGCTGCCCGGAGAAAGCGG
GGTCATCAGCGGCATGCGCAAGGCCTGCAAGGTGTTGATTTACGTGGACG
TGGCCGCGGCAATGTCGGACGGAGTC
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