mRNA_Ecto-sp13_S_contig6283.17020.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6283.17020.1
Unique NamemRNA_Ecto-sp13_S_contig6283.17020.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A6H5LIM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIM4_9PHAE)

HSP 1 Score: 442 bits (1136), Expect = 1.380e-149
Identity = 220/228 (96.49%), Postives = 226/228 (99.12%), Query Frame = 1 
Query:    1 QVVSLRVVMTKDDEPKCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDKKLEVTMAKSKR 684
            +VVS+RV+MTKD+EPKCAGLALVRFQNRDHAA+ALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAH KYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEA LRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTA+AAKTCIESMHGTDFMDKKLEVTMAKSKR
Sbjct:  239 EVVSMRVIMTKDEEPKCAGLALVRFQNRDHAARALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHTKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAALRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTADAAKTCIESMHGTDFMDKKLEVTMAKSKR 466
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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: D7FTF9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF9_ECTSI)

HSP 1 Score: 419 bits (1076), Expect = 1.030e-141
Identity = 222/268 (82.84%), Postives = 227/268 (84.70%), Query Frame = 1 
Query:    1 QVVSLRVVMTKDDEPKCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTK----------------------------ETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDK---------KLEVTMAKSKRKRD 693
            +VVS+RV+MTKD+EPKCAGLALVRFQNRDHAA+ALERLPE KMESNKLEAR SSNANTLFIGNLNKTWTK                            ETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYS AEAAKTCIESMHGTDFM K         KLEVTMAKSKRKRD
Sbjct:  276 EVVSMRVMMTKDEEPKCAGLALVRFQNRDHAARALERLPEIKMESNKLEARSSSNANTLFIGNLNKTWTKXXXXXXXXXXXXXXXXXXXXXXXXXXKKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSAAEAAKTCIESMHGTDFMGKLTVTSPAGRKLEVTMAKSKRKRD 543
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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A7J6VZ53_THATH (Polyadenylate-binding protein, cytoplasmic and nuclear n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VZ53_THATH)

HSP 1 Score: 120 bits (300), Expect = 4.580e-27
Identity = 71/214 (33.18%), Postives = 116/214 (54.21%), Query Frame = 1 
Query:   46 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEF-EKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTI--LENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDKKLEV 663
            K  G A V+F N++ A KAL  L    +   +    PS + +TLF+GN+  TWTKE + K+  E  ++G+ N  +  DA ++ L+RGF F  F        A+ +  K  +     E  V + +AE    + D E     + V+I GL    DE  +RKHF  +GTI ++V+   + +A+RKDF  ++++T EAA  CI+ ++ T+  D+K ++
Sbjct:  359 KSKGYAFVKFANKEQANKALSELKNPLIRGKRCGVAPSEDNDTLFVGNICNTWTKEAIKKKLKEYGLEGVENITLVSDAQHEGLSRGFAFVEFSCHADAMLAYKRLQKPDVVFGHAERTVKVAFAEPL-REPDPEIMAQVKSVFIDGLPSYWDEERVRKHFTPFGTIERIVLARNMPSAKRKDFGFVDFNTHEAAIACIDGVNNTELGDEKSKL 571
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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A0C9RL19_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_12905_2951 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9RL19_9SPER)

HSP 1 Score: 118 bits (296), Expect = 1.460e-26
Identity = 69/235 (29.36%), Postives = 119/235 (50.64%), Query Frame = 1 
Query:    1 QVVSLRVVMTKDDEPKCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEF-EKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDE----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFM---DKKLEVTMAKSK 681
            ++  +R++       K  G A VR+     A +A+  L   K+   K    P    +T+F+GN++KTW K+ ++ +  E  ++ I N  V  D  N  LNRGFGF   +     + A     K  +   +  V + WA+      +D     + V++ GL    +E  +++ FG +G I KVV+   + +A+RKDF  +NY+T EAA +CIE++   D +   D K++V ++ +K
Sbjct:  257 EITEIRLMKDLQQTGKNKGYAFVRYATAVEAKRAVTELANVKIRGKKCGVVPLEENDTIFLGNIDKTWKKDDIINKLKEAGIEHIENVTVIEDPHNSQLNRGFGFLELETYKDAQVAFRALQKKNVFGKDKAVKVSWAQPLNEPDEDVMAQVKSVFVDGLPSTWNEEQVKEQFGKFGDIEKVVLSRNMQSAKRKDFGFVNYTTREAAISCIETLSKADGLTDGDAKVKVKVSLAK 491
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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: UPI001FB05962 (nucleolin-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB05962)

HSP 1 Score: 117 bits (294), Expect = 3.110e-26
Identity = 70/234 (29.91%), Postives = 120/234 (51.28%), Query Frame = 1 
Query:    1 QVVSLRVVMTKDDEPKCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETV-LKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTI--LENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDKKLEVTMAKS 678
            +VV +R+        K  G A VRF  ++ A++AL  L    +   K E  P  + +TLF+GN+  TWTKE + LK  E  ++ ++N  +  D   + L+RGF F  F        A+ +  K  +     E    + +AE    + D E     + V++ G+    DE  +R+HF SYG ++++ +   + TA+RKDF  ++YS+ EAA  C++ ++  +  D K +V ++ S
Sbjct:  610 EVVDVRLHKKDTSTDKSRGYAFVRFATKEQASRALSELKNPLICGKKCETAPCKDNDTLFLGNICNTWTKEAIILKMKEYGIESVMNITLVSDPRREGLSRGFAFLEFPCHAEALLAYKRLQKSDVVFGHAERTAKVAFAEPL-REPDPEVLAQVKSVFLDGVPPDWDEEKVREHFKSYGEVIRITLSKNISTAKRKDFGFVDYSSHEAAVACVDDINNKELGDMKTKVKVSLS 842
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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: UPI000A2B0C16 (nucleolin n=1 Tax=Arachis ipaensis TaxID=130454 RepID=UPI000A2B0C16)

HSP 1 Score: 116 bits (290), Expect = 8.050e-26
Identity = 68/215 (31.63%), Postives = 114/215 (53.02%), Query Frame = 1 
Query:   46 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEFEKE-VDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTI--LENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDKKLEVT 666
            K  G A VRF N++HA +AL  +    +   +    PS + NTLF+GN+  TWTKE + ++ +   +DG+ N  + +DA  + L+RGF F  F        A+ +  K        E    + +AE    + D E     + V+I GL    +E  +R+   SYG IV++V+   + TA+RKD+  +++ST EAA  C+E+++ ++  D   +V+
Sbjct:  417 KNKGYAFVRFANKEHAKRALSEMKNPVIRGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIDGVENITLVLDAKCEGLSRGFAFLEFSSHGDAMLAYKRLQKPDAIFGHPERSAKVAFAEPM-REPDPEIMAQVKSVFINGLPPHWEEDHIREMLKSYGEIVRIVLARNISTAKRKDYGFVDFSTHEAAVACVEAVNKSELGDGASKVS 630
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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A1U8A963_NELNU (protein gar2-like isoform X1 n=6 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8A963_NELNU)

HSP 1 Score: 116 bits (290), Expect = 9.500e-26
Identity = 72/218 (33.03%), Postives = 117/218 (53.67%), Query Frame = 1 
Query:   46 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEF-EKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYK--DKLTIL----ENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDKKLEV 663
            K  G A V+F +++HA +AL  L    +   +    PS + +TLF+GN+  TWTKE + ++  E  ++GI N  +  D  ++ L+RGF F  F    SC A   + YK   K  ++    E    + +AE    + D E     + V++ GL    DE  +R+HF  YG I ++V+   + TA+RKDF  ++++T EAA  CI+ ++GT+  D K + 
Sbjct:  347 KNKGFAFVKFADKEHATRALSELKNPIIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKEYGIEGIENITLVPDPQHEGLSRGFAFLEF----SCHADAMQAYKRLQKTDVIFGHAERTAKVAFAEPL-REPDPEVMSQVKSVFVDGLPPHWDEDHVREHFKEYGEIERIVLARNMSTAKRKDFGFVDFTTHEAAIACIDGVNGTELGDGKSKT 559
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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A445APD4_ARAHY (Uncharacterized protein n=3 Tax=Arachis TaxID=3817 RepID=A0A445APD4_ARAHY)

HSP 1 Score: 115 bits (289), Expect = 1.350e-25
Identity = 67/209 (32.06%), Postives = 111/209 (53.11%), Query Frame = 1 
Query:   46 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEFEKE-VDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTI--LENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMD 648
            K  G A VRF N++HA +AL  +    +   +    PS + NTLF+GN+  TWTKE + ++ +   +DG+ N  + +DA  + L+RGF F  F        A+ +  K        E    + +AE    + D E     + V+I GL    +E  +R+   SYG IV++V+   + TA+RKD+  +++ST EAA  C+E+++ ++  D
Sbjct:  417 KNKGYAFVRFANKEHAKRALSEMKNPVIRGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIDGVENITLVLDAKCEGLSRGFAFLEFSSHGDAMLAYKRLQKPDAIFGHPERSAKVAFAEPM-REPDPEIMAQVKSVFINGLPPHWEEDHIREMLKSYGEIVRIVLARNISTAKRKDYGFVDFSTHEAAVACVEAVNKSELGD 624
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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A804ISR1_MUSAM (Uncharacterized protein n=4 Tax=Musa TaxID=4640 RepID=A0A804ISR1_MUSAM)

HSP 1 Score: 114 bits (285), Expect = 4.250e-25
Identity = 68/214 (31.78%), Postives = 114/214 (53.27%), Query Frame = 1 
Query:   46 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEFEK-EVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTI--LENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDKKLEV 663
            K  G A V+F N++ AA+AL  L    +   +    PS + +TLF+GN+  TWTKE + ++ +  +V+G+ +  + +D  N  L+RGF F  F        A+ +  K  +     E    + +AE    + D E     + V++ GL    DE  +++ F  YG I +VV+   + TA+RKDF  +N++T EAA TC+E ++ T+  D K ++
Sbjct:  282 KNKGFAFVKFANKEQAARALIELKNPMIRGKRCGIAPSEDNDTLFLGNICNTWTKEAIKQKLKDYDVEGVEHITLVLDTQNDGLSRGFAFLEFSCHQDAMLAYKRLQKPDVIFGHPERTAKVAFAEPL-REPDPEVMAQVKSVFVDGLPPFWDEDRVKEQFKGYGEIERVVLARNMSTAKRKDFGFVNFTTHEAAVTCVEGINDTELGDGKSKM 494
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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A200QQX1_9MAGN (RNA recognition motif domain n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QQX1_9MAGN)

HSP 1 Score: 114 bits (285), Expect = 4.480e-25
Identity = 72/233 (30.90%), Postives = 120/233 (51.50%), Query Frame = 1 
Query:   46 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEF-EKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTI--LENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMD----KKLEVTMAKSKRKRDSYGGG 708
            K  G A V+F  ++ A+KAL  L    +   +    P  + +TLF+GN+  TWT+E + ++  E  V+G+ N  +  DA ++ L+RGF F  F        A+ +  K  +     E  V + +AE    + D E     + V++ GL    +E  +R+HF  YG I ++V+   + TA+RKDF  ++++T EAA  CI+ +H T+  D     K++V +A    K  +  GG
Sbjct:  370 KNKGFAFVKFAQKEQASKALSELKNPVIRGKRCGVTPCEDNDTLFVGNICNTWTREAIKQKLKEYGVEGVENVTLVPDAQHEGLSRGFAFVEFSCHADATLAYKRLQKPDVVFGHTERTVKVAFAEPL-REPDPEIMAQVKSVFVDGLPPHWNEERVREHFKGYGEIERIVLARNMHTAKRKDFGFVDFTTHEAATACIDGVHNTELGDGKSKMKVKVRLASPLPKTQAVKGG 601
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LIM4_9PHAE1.380e-14996.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTF9_ECTSI1.030e-14182.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7J6VZ53_THATH4.580e-2733.18Polyadenylate-binding protein, cytoplasmic and nuc... [more]
A0A0C9RL19_9SPER1.460e-2629.36TSA: Wollemia nobilis Ref_Wollemi_Transcript_12905... [more]
UPI001FB059623.110e-2629.91nucleolin-like n=1 Tax=Impatiens glandulifera TaxI... [more]
UPI000A2B0C168.050e-2631.63nucleolin n=1 Tax=Arachis ipaensis TaxID=130454 Re... [more]
A0A1U8A963_NELNU9.500e-2633.03protein gar2-like isoform X1 n=6 Tax=Nelumbo nucif... [more]
A0A445APD4_ARAHY1.350e-2532.06Uncharacterized protein n=3 Tax=Arachis TaxID=3817... [more]
A0A804ISR1_MUSAM4.250e-2531.78Uncharacterized protein n=4 Tax=Musa TaxID=4640 Re... [more]
A0A200QQX1_9MAGN4.480e-2530.90RNA recognition motif domain n=1 Tax=Macleaya cord... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6283contigEcto-sp13_S_contig6283:2501..7968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score413.3
Seed ortholog evalue8.2e-113
Seed eggNOG ortholog2880.D7FTF9
Model size789
KEGG koko:K14795
Hectar predicted targeting categoryother localisation
GOsGO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0006417,GO:0006950,GO:0006952,GO:0006955,GO:0007623,GO:0008143,GO:0008150,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016020,GO:0017148,GO:0019219,GO:0019222,GO:0030425,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0034097,GO:0034248,GO:0034249,GO:0034250,GO:0034341,GO:0036477,GO:0042221,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0043489,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045087,GO:0045727,GO:0045934,GO:0048027,GO:0048255,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070717,GO:0070887,GO:0070934,GO:0070937,GO:0071013,GO:0071204,GO:0071310,GO:0071345,GO:0071346,GO:0080090,GO:0090365,GO:0090367,GO:0097159,GO:0097447,GO:0097452,GO:0097458,GO:0120025,GO:0120038,GO:1901363,GO:1902369,GO:1902373,GO:1902494,GO:1903311,GO:1903312,GO:1990635,GO:1990904,GO:2000112,GO:2000113
Exons7
EggNOG free text desc.cytidine to uridine editing
EggNOG OGsKOG0117@1,KOG0117@2759
Cds size765
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6283.17020.1prot_Ecto-sp13_S_contig6283.17020.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6283 2501..7944 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463872.6091163-CDS-Ecto-sp13_S_contig6283:2500..25961681463872.6091163-CDS-Ecto-sp13_S_contig6283:2500..2596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6283 2501..2596 -
1681463872.622293-CDS-Ecto-sp13_S_contig6283:3500..35431681463872.622293-CDS-Ecto-sp13_S_contig6283:3500..3543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6283 3501..3543 -
1681463872.6335864-CDS-Ecto-sp13_S_contig6283:4358..44801681463872.6335864-CDS-Ecto-sp13_S_contig6283:4358..4480Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6283 4359..4480 -
1681463872.6549056-CDS-Ecto-sp13_S_contig6283:5005..51491681463872.6549056-CDS-Ecto-sp13_S_contig6283:5005..5149Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6283 5006..5149 -
1681463872.6714149-CDS-Ecto-sp13_S_contig6283:5573..57471681463872.6714149-CDS-Ecto-sp13_S_contig6283:5573..5747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6283 5574..5747 -
1681463872.6900418-CDS-Ecto-sp13_S_contig6283:7039..71231681463872.6900418-CDS-Ecto-sp13_S_contig6283:7039..7123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6283 7040..7123 -
1681463872.7029486-CDS-Ecto-sp13_S_contig6283:7842..79441681463872.7029486-CDS-Ecto-sp13_S_contig6283:7842..7944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6283 7843..7944 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463872.7148283-UTR-Ecto-sp13_S_contig6283:7944..79681681463872.7148283-UTR-Ecto-sp13_S_contig6283:7944..7968Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6283 7945..7968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6283.17020.1

>prot_Ecto-sp13_S_contig6283.17020.1 ID=prot_Ecto-sp13_S_contig6283.17020.1|Name=mRNA_Ecto-sp13_S_contig6283.17020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp
MTKDDEPKCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANT
LFIGNLNKTWTKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFK
DVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEK
VDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIES
MHGTDFMDKKLEVTMAKSKRKRDSYGGGRARGGGGGTLGGGRGGSRGYGG
GGGGG
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mRNA from alignment at Ecto-sp13_S_contig6283:2501..7968-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6283.17020.1 ID=mRNA_Ecto-sp13_S_contig6283.17020.1|Name=mRNA_Ecto-sp13_S_contig6283.17020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6283:2501..7968- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGTGTCGTTGCGCGTGGTGATGACCAAGGACGACGAGCCCAAGTG
TGCCGGCCTCGCCCTGGTGCGGTTCCAGAACCGCGATCACGCCGCCAAGG
CGCTGGAGCGCCTCCCTGAGACTAAGGTGCCACGAGAAGAATAGCGCAGT
GTTATCGTACATTGCGTACATGAGGGGATCTCAAGAGATGGTCTTACGGA
GATCAGTCTTGGCAGATCTAGCTTCAAACAGATTTTAGTGGAGCCAGAAA
CTCAAATCTCCTGGGGGTCTTGACAGGGAAACGTTGGTCCGGGAGTTGAT
GATAGGAATTTCGGTATTCCATTACACATTCGCAGGCGTCGCTTGTGTGT
GTGCTTGAAATCCGCCCGACAAAGGGCTCCGAAATGATTCTGGCATTCTT
TTCTGCTTCAAGGAAAGGTGGTGTGTTGCTCCGGTGTTGCGGTTAGAGTG
TTGATGGAGCTTTGCGCAAAAGCCCCGATCCATCCTTCACGGGAATCGCC
ATGAGACACTATTCTGTAGTTTCATGGAGGCAGCGTACCTTGAAGGGCTA
GTCACATTTTGCAAAATGGAACATGCCCACGAACTGTGGAGAAAAGTCTC
CATGACTGCTTTCTTGTTGTTGGGAAGGTCGAAGGCATCTTCGGCAGGCG
TTTCATAGCAATGTACCACGAGCATATCGACGCTTTAGTACTTTTGTGAC
GCGACGCTTGTGAAACTGATGCCTGTTCGCTTACTGATGTTCGCGTGGAC
GTAAACGTGCCGTGCTTGTCTGTTTTTTTTTCGTCTGTGTTGATTCAATT
CGCAACAACGCCGGGGTGGGCAAAACTTCTGTCGTTATTTCTAAGATGGA
GAGCAACAAGCTCGAGGCTCGCCCTTCCAGCAATGCCAACACGCTCTTCA
TCGGAAACCTCAACAAGACATGGACCAAGGTCGGTCGCCTCGTGCTTCAT
TTGTGGACGCAACCATGCATTCTCTCCTCCTTGTTTTCCACACCCACCTG
TAATTTTTCTAGATGGACAAGCAGTTGCTAACGGCTCGCCCATCGGGTAA
CCCCAACACCCTGTTCATTGGAGGCCTGAACAGGACGTGGAAAAAGGCAA
GTTTTTTTTTTGTGTCACGGGACGTTCCACGGTAAGTGCGTCCTGTGATA
CATGGAATAGTCCCAACAGCGCGTCGCGGAAGGGAAAAATTACACCGGCA
GGAGCAATAGTGTGACAGACGTTCATGGCCCGAACTGACGCCGTTTATTT
TTGTGAACATATTTCGAGCATTTATCTTTTGCACTTCTCGTGGTAAGATA
TAGATTTCTTGCTTCCAGAGCATTGTTGGACGCGCTGGTGACCTCGGGCG
AACTTCACTTCGAAACTCTTTGAAGATACGACCATGCGCGTACACGCACA
TGCAACGCTATCGCGTCCTGTGTATCCGGGAAGAATCCTGTATCAGACAC
TCAGGACATGTACAGAAATAAGGTAGATTTTACTAGAATTGGTCGCGGTG
GGGACACTGCTCCCCTCGTTTTGCAGTACATAAATACCTGCACTGTTTTT
GTTTCTCAGCGGGTACATCGGTTCTGACCTCTGTTTGGTAGCTTCTCTCT
GTGTGCTTTTGGAAGGCGAGATGTCCAATTTCCATGAGTGCACGACCTTT
TGCCCATTAAAGGACCACATGCGAAAGGACACATTTTTCGGCGTTGGGCC
GCGCTTGGGTGAATCGTTCACGTGGCGCGATGAACGAGCGTGTCTCCAAG
AGCAATAGTTGCGGAGGCTCGGCGTAAACATAGCTCGAGTGCACCCGCGC
ATGACCTCTACGCCACACCCTAACCGGAACGCAACCATGTCATCGGTCCC
CGGCATTCAGGGCATCGTCGGTTTGACTTTGCCAAATGAAAATGCATGCT
GGTATCGTGGTATTGATGAGGCGGGAAAGGGATGGAGACTTGGGCAGTAT
GCATACATGTATGATGGTATCGTGGTCTGCCGTCAATCACCACCAGTTTC
CTTTTCCCCGTTAATGCTTCGTTTTTTTCTGTTTCCTTGGTATGTTTTTT
CATTTCCTTCTCATGACCCAACGAATCCATCTCTATGAAAAAGAATCTAT
AATAAGATAGATTTGTTTCTGATTCCTGGTGGACCTGTTGTTTTCGAACT
TTCGCTTTCCGCGTTCACTTTTATTTTTCTGTTTCCTGTTGAACTCTTCT
TTTTTTTTTTGACTCGATTAGGAAACTGTCCTGAAGGAGTTTGAGAAGGA
GGTGGACGGCATTGTCAACTTCGAGGTGACCATGGACGCCCTCAACAAGA
ACCTCAACCGCGGCTTCGGCTTCGCCACGTTCAAGGACGTGGACTCCTGC
AAGGCCGCCCACGCCAAGTACTACAAGGACAAGCTCACCATCTTGGTCAG
TGGCCAGCCAATCCAGTTCGCCTCGTGTCTAGTGTGGTAACGTTTTTCCA
TGTTCAGGGGTAAAAAGCGAGAGTCACAACCCCACAGGAACAAGCAGCAT
GATCGAACCGATCAGCAATTCGGTAGGGGTGTGATGAGCTTCAGGGCTAC
TTTCCTGTTGTGCAGTCCGCGAGGGGCGCAAAGGTATCGAGCAAGTTACT
GCTGCTGTTCGTTTTTTCGTTGTATCGTATGCTTTTCTTATATTCGCATG
TCTTGTCACATGGCAACGGTTCCAGTTCCGGTTCCGATCTACTCAATGAC
CGTTTTTGTTCCCTTCCGTCACTGTAATCGCGTGTTGTTGTTTCGGCTCA
ACCTGTTTGTGTGCGGATCAATCTGTGCCGGTGCGGCCTAAATATGCCGG
TCTATTTCTTCTCTCTTAGGAGAACAAGGTGCTGATCGACTGGGCGGAGA
CCCGCGGCAACAAGCAGGACGACGAACGTGGTGTGTACATCACGGGGCTA
GACGAGAAGGTCGACGAGGCTGGCTTGCGGAAGCACTTCGGGTCCTACGG
CACAATCGTGAAGGTAAAGAGGAGAGTGACGACAGACCGTAGTTCCAGTG
TCATGGGCCTTGCGCAGTTTCAACGATTGATCCACCGTCGTGGGTCTGTG
CTTTGTTGTTTCTGCGTGGTGTGAAAAGTGAGAACAATCGGTTGGTTATT
TCTGCTTGTATTGAGAGAGGGAATCGTGCCCGACGGAGGTTGTGTAGATC
ATACCCTTCATGGAGGGGTTCTTGACGCTGGCGGTGATTGGTTAGAGGCA
ATATTTTTTGCTATCATAGGTTTCACTTGATGTAGTCCTCTTTTTATGGT
TGAAGCGTGTTTGCATTCCTGTATCGGCCTTGGAAAGAATAGACGAGAAC
ATGGTGGGATTCGAGGTCGGAAAGTTATGTGTGCGACGATAACGACAGGA
AGACCAAGACAGCAATAATGATCAGCGCCGTATATGGATAGCCTCGCAGA
TGATACGATAGTTGAAGTCGATGTCGGCACCGTTTTGTTTTTCGACGACG
ACATACACATTTTCCGTGCTTTTTGGTCGTTCCATCAGGTGGTGGTGGGG
AACCAAGTCGGCACCGCCCAGCGCAAGGATTTCGCGATCATCAACTACAG
CACCGCGGAGGCTGCCAAGACCTGCATCGAATCCATGCACGGGACCGACT
TCATGGACAAGTGAGTCAGCCGACCCCATCGAGTGCGTTGCACGGGCTTT
AGTAGAGGTCCCTGTTGAGTGCTAGTGTATGTGCCCAGAAATTGACCGGC
ATTTTACCGGTCCGGCACCATTCGAAGTATTGAGAATTTGACTTGGAAAT
TCAGTGCGTGCCCGCCAAAACCACAGGCACTATTCCGGGCGCAGGCACTT
TTGTGGGCACCAGCACTAAACAGAGACCTTTCCTGTAATCCTTGTAGAGC
GAGAATCCATTTTTTTTTTTTTTCGTTCTTCACCGTGAAACCACCAATGT
GTATTTCAGCGCGGAAGGCACCTAGATGTAGTAGTCCGCTATTTACCTTG
CTGCTCAAACGCTACGTGCTTCGGTTGTTTCCCTCGTATGTGCCATTTTT
TTCGCGTGTTTTTGTGCTCCTTGTCTCTCGGGCGAGGACTAGGACAGCGA
TCACTGGGGTTTCCGTGAATAGCGGCCTGAAAAAGTAGGGGCCCGGGGGA
CAGTTATTCCTCGTCAGGCAACCCGAGTAGGCAGCGAGTAGACGAGCGTC
GCTCCCCACCCCAGAGAAGATGCGCTGTCCGACTGGCCGAGTTTGTTGTC
CGCCTGCTTGGTTGTGCCAGTCTTGCCATTCCTGATTGTTGCAGCTGTAG
GTTGTTCTTTGGGAGGTGTTCCTCACGTCGTGTGTCGGTCGACCTCGTCT
TGTGTCGACCGGGTATGTGGCTGGATGACCGTGAGGAGTCCGGCTGGCCG
GTGACTTTGTGAACTGCCGCTGATCACTGCTGTGTGGCAAACCCTTTCAT
TTCGGCCGTGTCTTCGACTTCGCAGGAAGCTGGAGGTTACCATGGCCAAG
TCCAAGCGGAAGCGGGACGTGAGTACTGATAGCTTCCGCTTGCATGGAGG
CGTTTTTTTTTGTGTTTTTGTTTTCGCGTGTTTGGCCGCTGTTGCATCCG
TATCCACTTTCATGGTTGCCGCTCCTTTTCGGACGTAAGAGCAGCATAGC
GATCTTGGCAGAGCACAAAAGCGTTACATTCCGCCGTTGCCCTATGCGGG
GTTTCGCCACAACAGGCAGGCTTATCATAGTTGGGTCGACGGGAGGCGTG
GAATGCATCGCATTGTCGTTGGAAACCTGAAAATTGAACGGAGAACGGCC
ATCCCATCTAGGAAATTCATGAGTGAAAGAAACGTTATGGTGACCGAAAT
TCTAGGGTCTGCGGAGGGTGAAAGGTTTGGTGTGTCATTATTAGGCGCCG
CGTTGTTCAAGCGTAGGTTCTGTCGATCGAATAAGACGTTGAACACGTAG
GGTTCTCGCCCGTTTTCGGTGGATGCTTTTGGGGTGAGAACATGCTTTTT
TTTTTAATTTAACCCGCCTGTCTAGTTGGAACAGAGCGTACCTACATTTG
TCCATTACCTTTTTTTTTACAGTAATTTTTTCGTGCTGCAGATCGACTTG
GATCTGTGTCCAAGAGTATGAGGGGATTGTGTGGTGTGCTTACGACCAGT
GAATTGAGCCAATGCCCAAAGAGTTGTACGTCCACGCTGGCATTTTTCTT
CTTGGTCGAAGCGCTCATTCCTTGTGTTCGTGGTTCGTGGTCCTTGAATT
TGACCGGAAACCTCCCGACGAAAATTGTATTCGAAATAACAACGGACATG
CTCTCGATGTGTGGATATCTTGTCGCGTGAGCCGATCTTGTATGCATACC
TCATTCCGACACCTCCTTGCACCATAGCCTTTCCCTGACGTCCTCGGCTC
GACGATCCCCTACCGCTTCTAGAGCTACGGTGGTGGGCGAGCTAGAGGCG
GCGGCGGTGGTACCCTCGGCGGGGGGCGCGGTGGCTCCAGGGGCTACGGC
GGCGGCGGCGGCGGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6283:2501..7968-

>mRNA_Ecto-sp13_S_contig6283.17020.1 ID=mRNA_Ecto-sp13_S_contig6283.17020.1|Name=mRNA_Ecto-sp13_S_contig6283.17020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6283:2501..7968- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAAGGACGACGAGCCCAAGTGTGCCGGCCTCGCCCTGGTGCGGTT
CCAGAACCGCGATCACGCCGCCAAGGCGCTGGAGCGCCTCCCTGAGACTA
AGATGGAGAGCAACAAGCTCGAGGCTCGCCCTTCCAGCAATGCCAACACG
CTCTTCATCGGAAACCTCAACAAGACATGGACCAAGGAAACTGTCCTGAA
GGAGTTTGAGAAGGAGGTGGACGGCATTGTCAACTTCGAGGTGACCATGG
ACGCCCTCAACAAGAACCTCAACCGCGGCTTCGGCTTCGCCACGTTCAAG
GACGTGGACTCCTGCAAGGCCGCCCACGCCAAGTACTACAAGGACAAGCT
CACCATCTTGGAGAACAAGGTGCTGATCGACTGGGCGGAGACCCGCGGCA
ACAAGCAGGACGACGAACGTGGTGTGTACATCACGGGGCTAGACGAGAAG
GTCGACGAGGCTGGCTTGCGGAAGCACTTCGGGTCCTACGGCACAATCGT
GAAGGTGGTGGTGGGGAACCAAGTCGGCACCGCCCAGCGCAAGGATTTCG
CGATCATCAACTACAGCACCGCGGAGGCTGCCAAGACCTGCATCGAATCC
ATGCACGGGACCGACTTCATGGACAAGAAGCTGGAGGTTACCATGGCCAA
GTCCAAGCGGAAGCGGGACAGCTACGGTGGTGGGCGAGCTAGAGGCGGCG
GCGGTGGTACCCTCGGCGGGGGGCGCGGTGGCTCCAGGGGCTACGGCGGC
GGCGGCGGCGGCGGG
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