prot_Ecto-sp13_S_contig6283.17020.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig6283.17020.1
Unique Name	prot_Ecto-sp13_S_contig6283.17020.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	255

Homology

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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A6H5LIM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIM4_9PHAE)

HSP 1 Score: 431 bits (1108), Expect = 1.690e-145
Identity = 215/220 (97.73%), Postives = 218/220 (99.09%), Query Frame = 0

Query:    1 MTKDDEPKCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDKKLEVTMAKSKR 220
            MTKD+EPKCAGLALVRFQNRDHAA+ALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAH KYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEA LRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTA+AAKTCIESMHGTDFMDKKLEVTMAKSKR
Sbjct:  247 MTKDEEPKCAGLALVRFQNRDHAARALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHTKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAALRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTADAAKTCIESMHGTDFMDKKLEVTMAKSKR 466

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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: D7FTF9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF9_ECTSI)

HSP 1 Score: 409 bits (1050), Expect = 6.430e-138
Identity = 217/260 (83.46%), Postives = 219/260 (84.23%), Query Frame = 0

Query:    1 MTKDDEPKCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTK----------------------------ETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDK---------KLEVTMAKSKRKRD 223
            MTKD+EPKCAGLALVRFQNRDHAA+ALERLPE KMESNKLEAR SSNANTLFIGNLNKTWTK                            ETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYS AEAAKTCIESMHGTDFM K         KLEVTMAKSKRKRD
Sbjct:  284 MTKDEEPKCAGLALVRFQNRDHAARALERLPEIKMESNKLEARSSSNANTLFIGNLNKTWTKXXXXXXXXXXXXXXXXXXXXXXXXXXKKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSAAEAAKTCIESMHGTDFMGKLTVTSPAGRKLEVTMAKSKRKRD 543

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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A7J6VZ53_THATH (Polyadenylate-binding protein, cytoplasmic and nuclear n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VZ53_THATH)

HSP 1 Score: 119 bits (299), Expect = 4.970e-27
Identity = 71/214 (33.18%), Postives = 116/214 (54.21%), Query Frame = 0

Query:    8 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEF-EKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTI--LENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDKKLEV 213
            K  G A V+F N++ A KAL  L    +   +    PS + +TLF+GN+  TWTKE + K+  E  ++G+ N  +  DA ++ L+RGF F  F        A+ +  K  +     E  V + +AE    + D E     + V+I GL    DE  +RKHF  +GTI ++V+   + +A+RKDF  ++++T EAA  CI+ ++ T+  D+K ++
Sbjct:  359 KSKGYAFVKFANKEQANKALSELKNPLIRGKRCGVAPSEDNDTLFVGNICNTWTKEAIKKKLKEYGLEGVENITLVSDAQHEGLSRGFAFVEFSCHADAMLAYKRLQKPDVVFGHAERTVKVAFAEPL-REPDPEIMAQVKSVFIDGLPSYWDEERVRKHFTPFGTIERIVLARNMPSAKRKDFGFVDFNTHEAAIACIDGVNNTELGDEKSKL 571

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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: UPI000A2B0C16 (nucleolin n=1 Tax=Arachis ipaensis TaxID=130454 RepID=UPI000A2B0C16)

HSP 1 Score: 115 bits (289), Expect = 8.840e-26
Identity = 68/215 (31.63%), Postives = 114/215 (53.02%), Query Frame = 0

Query:    8 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEFEKE-VDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTI--LENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDKKLEVT 214
            K  G A VRF N++HA +AL  +    +   +    PS + NTLF+GN+  TWTKE + ++ +   +DG+ N  + +DA  + L+RGF F  F        A+ +  K        E    + +AE    + D E     + V+I GL    +E  +R+   SYG IV++V+   + TA+RKD+  +++ST EAA  C+E+++ ++  D   +V+
Sbjct:  417 KNKGYAFVRFANKEHAKRALSEMKNPVIRGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIDGVENITLVLDAKCEGLSRGFAFLEFSSHGDAMLAYKRLQKPDAIFGHPERSAKVAFAEPM-REPDPEIMAQVKSVFINGLPPHWEEDHIREMLKSYGEIVRIVLARNISTAKRKDYGFVDFSTHEAAVACVEAVNKSELGDGASKVS 630

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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A0C9RL19_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_12905_2951 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9RL19_9SPER)

HSP 1 Score: 115 bits (289), Expect = 1.000e-25
Identity = 68/220 (30.91%), Postives = 113/220 (51.36%), Query Frame = 0

Query:    8 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEF-EKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDE----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFM---DKKLEVTMAKSK 219
            K  G A VR+     A +A+  L   K+   K    P    +T+F+GN++KTW K+ ++ +  E  ++ I N  V  D  N  LNRGFGF   +     + A     K  +   +  V + WA+      +D     + V++ GL    +E  +++ FG +G I KVV+   + +A+RKDF  +NY+T EAA +CIE++   D +   D K++V ++ +K
Sbjct:  272 KNKGYAFVRYATAVEAKRAVTELANVKIRGKKCGVVPLEENDTIFLGNIDKTWKKDDIINKLKEAGIEHIENVTVIEDPHNSQLNRGFGFLELETYKDAQVAFRALQKKNVFGKDKAVKVSWAQPLNEPDEDVMAQVKSVFVDGLPSTWNEEQVKEQFGKFGDIEKVVLSRNMQSAKRKDFGFVNYTTREAAISCIETLSKADGLTDGDAKVKVKVSLAK 491

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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A1U8A963_NELNU (protein gar2-like isoform X1 n=6 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8A963_NELNU)

HSP 1 Score: 115 bits (289), Expect = 1.040e-25
Identity = 72/218 (33.03%), Postives = 117/218 (53.67%), Query Frame = 0

Query:    8 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEF-EKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYK--DKLTIL----ENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDKKLEV 213
            K  G A V+F +++HA +AL  L    +   +    PS + +TLF+GN+  TWTKE + ++  E  ++GI N  +  D  ++ L+RGF F  F    SC A   + YK   K  ++    E    + +AE    + D E     + V++ GL    DE  +R+HF  YG I ++V+   + TA+RKDF  ++++T EAA  CI+ ++GT+  D K + 
Sbjct:  347 KNKGFAFVKFADKEHATRALSELKNPIIRGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKEYGIEGIENITLVPDPQHEGLSRGFAFLEF----SCHADAMQAYKRLQKTDVIFGHAERTAKVAFAEPL-REPDPEVMSQVKSVFVDGLPPHWDEDHVREHFKEYGEIERIVLARNMSTAKRKDFGFVDFTTHEAAIACIDGVNGTELGDGKSKT 559

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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A445APD4_ARAHY (Uncharacterized protein n=3 Tax=Arachis TaxID=3817 RepID=A0A445APD4_ARAHY)

HSP 1 Score: 115 bits (288), Expect = 1.470e-25
Identity = 67/209 (32.06%), Postives = 111/209 (53.11%), Query Frame = 0

Query:    8 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEFEKE-VDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTI--LENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMD 208
            K  G A VRF N++HA +AL  +    +   +    PS + NTLF+GN+  TWTKE + ++ +   +DG+ N  + +DA  + L+RGF F  F        A+ +  K        E    + +AE    + D E     + V+I GL    +E  +R+   SYG IV++V+   + TA+RKD+  +++ST EAA  C+E+++ ++  D
Sbjct:  417 KNKGYAFVRFANKEHAKRALSEMKNPVIRGKRCGTAPSEDNNTLFLGNICNTWTKEAIKQKLKDYGIDGVENITLVLDAKCEGLSRGFAFLEFSSHGDAMLAYKRLQKPDAIFGHPERSAKVAFAEPM-REPDPEIMAQVKSVFINGLPPHWEEDHIREMLKSYGEIVRIVLARNISTAKRKDYGFVDFSTHEAAVACVEAVNKSELGD 624

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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: UPI001FB05962 (nucleolin-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB05962)

HSP 1 Score: 114 bits (286), Expect = 2.870e-25
Identity = 67/219 (30.59%), Postives = 114/219 (52.05%), Query Frame = 0

Query:    8 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETV-LKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTI--LENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDKKLEVTMAKS 218
            K  G A VRF  ++ A++AL  L    +   K E  P  + +TLF+GN+  TWTKE + LK  E  ++ ++N  +  D   + L+RGF F  F        A+ +  K  +     E    + +AE    + D E     + V++ G+    DE  +R+HF SYG ++++ +   + TA+RKDF  ++YS+ EAA  C++ ++  +  D K +V ++ S
Sbjct:  625 KSRGYAFVRFATKEQASRALSELKNPLICGKKCETAPCKDNDTLFLGNICNTWTKEAIILKMKEYGIESVMNITLVSDPRREGLSRGFAFLEFPCHAEALLAYKRLQKSDVVFGHAERTAKVAFAEPL-REPDPEVLAQVKSVFLDGVPPDWDEEKVREHFKSYGEVIRITLSKNISTAKRKDFGFVDYSSHEAAVACVDDINNKELGDMKTKVKVSLS 842

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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A804ISR1_MUSAM (Uncharacterized protein n=4 Tax=Musa TaxID=4640 RepID=A0A804ISR1_MUSAM)

HSP 1 Score: 114 bits (284), Expect = 4.650e-25
Identity = 68/214 (31.78%), Postives = 114/214 (53.27%), Query Frame = 0

Query:    8 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEFEK-EVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTI--LENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMDKKLEV 213
            K  G A V+F N++ AA+AL  L    +   +    PS + +TLF+GN+  TWTKE + ++ +  +V+G+ +  + +D  N  L+RGF F  F        A+ +  K  +     E    + +AE    + D E     + V++ GL    DE  +++ F  YG I +VV+   + TA+RKDF  +N++T EAA TC+E ++ T+  D K ++
Sbjct:  282 KNKGFAFVKFANKEQAARALIELKNPMIRGKRCGIAPSEDNDTLFLGNICNTWTKEAIKQKLKDYDVEGVEHITLVLDTQNDGLSRGFAFLEFSCHQDAMLAYKRLQKPDVIFGHPERTAKVAFAEPL-REPDPEVMAQVKSVFVDGLPPFWDEDRVKEQFKGYGEIERVVLARNMSTAKRKDFGFVNFTTHEAAVTCVEGINDTELGDGKSKM 494

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BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Match: A0A200QQX1_9MAGN (RNA recognition motif domain n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QQX1_9MAGN)

HSP 1 Score: 114 bits (284), Expect = 4.900e-25
Identity = 72/233 (30.90%), Postives = 120/233 (51.50%), Query Frame = 0

Query:    8 KCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANTLFIGNLNKTWTKETVLKEF-EKEVDGIVNFEVTMDALNKNLNRGFGFATFKDVDSCKAAHAKYYKDKLTI--LENKVLIDWAETRGNKQDDE-----RGVYITGLDEKVDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIESMHGTDFMD----KKLEVTMAKSKRKRDSYGGG 228
            K  G A V+F  ++ A+KAL  L    +   +    P  + +TLF+GN+  TWT+E + ++  E  V+G+ N  +  DA ++ L+RGF F  F        A+ +  K  +     E  V + +AE    + D E     + V++ GL    +E  +R+HF  YG I ++V+   + TA+RKDF  ++++T EAA  CI+ +H T+  D     K++V +A    K  +  GG
Sbjct:  370 KNKGFAFVKFAQKEQASKALSELKNPVIRGKRCGVTPCEDNDTLFVGNICNTWTREAIKQKLKEYGVEGVENVTLVPDAQHEGLSRGFAFVEFSCHADATLAYKRLQKPDVVFGHTERTVKVAFAEPL-REPDPEIMAQVKSVFVDGLPPHWNEERVREHFKGYGEIERIVLARNMHTAKRKDFGFVDFTTHEAATACIDGVHNTELGDGKSKMKVKVRLASPLPKTQAVKGG 601

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6283.17020.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5LIM4_9PHAE	1.690e-145	97.73	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FTF9_ECTSI	6.430e-138	83.46	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A7J6VZ53_THATH	4.970e-27	33.18	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
UPI000A2B0C16	8.840e-26	31.63	nucleolin n=1 Tax=Arachis ipaensis TaxID=130454 Re...	[more]
A0A0C9RL19_9SPER	1.000e-25	30.91	TSA: Wollemia nobilis Ref_Wollemi_Transcript_12905...	[more]
A0A1U8A963_NELNU	1.040e-25	33.03	protein gar2-like isoform X1 n=6 Tax=Nelumbo nucif...	[more]
A0A445APD4_ARAHY	1.470e-25	32.06	Uncharacterized protein n=3 Tax=Arachis TaxID=3817...	[more]
UPI001FB05962	2.870e-25	30.59	nucleolin-like n=1 Tax=Impatiens glandulifera TaxI...	[more]
A0A804ISR1_MUSAM	4.650e-25	31.78	Uncharacterized protein n=4 Tax=Musa TaxID=4640 Re...	[more]
A0A200QQX1_9MAGN	4.900e-25	30.90	RNA recognition motif domain n=1 Tax=Macleaya cord...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 141..214 e-value: 4.5E-15 score: 66.1 coord: 50..127 e-value: 4.6E-9 score: 46.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 142..211 e-value: 1.1E-13 score: 50.8 coord: 51..116 e-value: 1.3E-8 score: 34.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 140..218 score: 14.539
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 49..131 score: 11.844
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 133..253 e-value: 1.9E-22 score: 81.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 48..130 e-value: 3.4E-15 score: 57.9
None	No IPR available	PANTHER	PTHR21245	FAMILY NOT NAMED	coord: 11..248
None	No IPR available	PANTHER	PTHR21245:SF10	SYNCRIP, ISOFORM Q	coord: 11..248
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 48..219

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6283	contig	Ecto-sp13_S_contig6283:2501..7944 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6283.17020.1	mRNA_Ecto-sp13_S_contig6283.17020.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig6283 2501..7968 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig6283.17020.1 ID=prot_Ecto-sp13_S_contig6283.17020.1|Name=mRNA_Ecto-sp13_S_contig6283.17020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp
MTKDDEPKCAGLALVRFQNRDHAAKALERLPETKMESNKLEARPSSNANT
LFIGNLNKTWTKETVLKEFEKEVDGIVNFEVTMDALNKNLNRGFGFATFK
DVDSCKAAHAKYYKDKLTILENKVLIDWAETRGNKQDDERGVYITGLDEK
VDEAGLRKHFGSYGTIVKVVVGNQVGTAQRKDFAIINYSTAEAAKTCIES
MHGTDFMDKKLEVTMAKSKRKRDSYGGGRARGGGGGTLGGGRGGSRGYGG
GGGGG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf