mRNA_Ecto-sp13_S_contig62805.17018.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62805.17018.1
Unique NamemRNA_Ecto-sp13_S_contig62805.17018.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig62805.17018.1 vs. uniprot
Match: A0A6H5JV35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV35_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 4.130e-16
Identity = 50/86 (58.14%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    4 RGFYAGPVGYISAGASEFAVAIRSAL----------------------------------MTLFAGAGIVPGSVALSEWAETGVKV 159
            RGFYAGPVGYISAGASEF VAIRSAL                                  MTLFAGAGIVPGSVALSEWAETGVK+
Sbjct:  536 RGFYAGPVGYISAGASEFGVAIRSALVTDSWSSPEGFSRRGGGLCSAGGPAGRGAGGGSEMTLFAGAGIVPGSVALSEWAETGVKM 621          
BLAST of mRNA_Ecto-sp13_S_contig62805.17018.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.690e-15
Identity = 49/86 (56.98%), Postives = 50/86 (58.14%), Query Frame = 1
Query:    4 RGFYAGPVGYISAGASEFAVAIRSAL----------------------------------MTLFAGAGIVPGSVALSEWAETGVKV 159
            RGFYAGPVGYISAGASEF VAIRSAL                                  MTLFAGAGIVPGSVAL EWAETGVK+
Sbjct:  769 RGFYAGPVGYISAGASEFGVAIRSALVTDSWSSPEGFSRRGGVLGSAGGPAARGVGGGSEMTLFAGAGIVPGSVALLEWAETGVKM 854          
BLAST of mRNA_Ecto-sp13_S_contig62805.17018.1 vs. uniprot
Match: A0A0G4GZP4_VITBC (MR_MLE domain-containing protein n=5 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GZP4_VITBC)

HSP 1 Score: 68.6 bits (166), Expect = 3.530e-12
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    4 RGFYAGPVGYISAGASEFAVAIRSALMT-------------LFAGAGIVPGSVALSEWAETGVKV 159
            RGFYAGPVGY++A  SEFAVAIRSAL+              +FAGAGIVPGS A  EW ET VK+
Sbjct:  583 RGFYAGPVGYVAATGSEFAVAIRSALIRPDDSGRRPSSVVHVFAGAGIVPGSTASGEWRETAVKM 647          
BLAST of mRNA_Ecto-sp13_S_contig62805.17018.1 vs. uniprot
Match: A0A4D9D2W1_9STRA (MR_MLE domain-containing protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2W1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.680e-11
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    4 RGFYAGPVGYISAGASEFAVAIRSALMT-----LFAGAGIVPGSVALSEWAETGVKV 159
            RGFYAGP+G++S  ++EFAVAIRS L+      +FAGAGIVPGS A  EWAE G K+
Sbjct:  464 RGFYAGPIGFLSRESAEFAVAIRSVLIVRERAHVFAGAGIVPGSTAEGEWAEIGAKM 520          
BLAST of mRNA_Ecto-sp13_S_contig62805.17018.1 vs. uniprot
Match: UPI00036B459B (isochorismate synthase n=1 Tax=Enterovibrio norvegicus TaxID=188144 RepID=UPI00036B459B)

HSP 1 Score: 64.3 bits (155), Expect = 2.680e-11
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    4 RGFYAGPVGYISAGASEFAVAIRSALMT-----LFAGAGIVPGSVALSEWAETGVKV 159
            RG+Y+G VGY+SA  SEF VAIRSALM      LFAGAGIVPGSVA SEW E   K+
Sbjct:  115 RGWYSGSVGYLSAERSEFCVAIRSALMMGDSLQLFAGAGIVPGSVAESEWKELDRKM 171          
BLAST of mRNA_Ecto-sp13_S_contig62805.17018.1 vs. uniprot
Match: A0A2E7EPG2_9PLAN (Isochorismate synthase MenF n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7EPG2_9PLAN)

HSP 1 Score: 65.5 bits (158), Expect = 4.230e-11
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 HRGFYAGPVGYISAGASEFAVAIRSAL-----MTLFAGAGIVPGSVALSEWAETGVKV 159
            HRG+YAGP+G++ A A+EFAVAIRS L     ++L++GAGIVPGS A SEW E   K+
Sbjct:  380 HRGWYAGPIGWVGADAAEFAVAIRSGLVRDRQLSLYSGAGIVPGSTAESEWEEIEHKI 437          
BLAST of mRNA_Ecto-sp13_S_contig62805.17018.1 vs. uniprot
Match: T0T2Y0_9PROT (Isochorismate synthase n=1 Tax=Bacteriovorax sp. BSW11_IV TaxID=1353529 RepID=T0T2Y0_9PROT)

HSP 1 Score: 65.1 bits (157), Expect = 5.800e-11
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    4 RGFYAGPVGYISAGASEFAVAIRSALMT-----LFAGAGIVPGSVALSEWAETGVKV 159
            RG YAGP+GYIS  ASEFAVAIRSAL+      ++ GAGIV GS   SEW ETGVK+
Sbjct:  394 RGLYAGPMGYISGEASEFAVAIRSALLEGERIHIYGGAGIVMGSDPKSEWEETGVKM 450          
BLAST of mRNA_Ecto-sp13_S_contig62805.17018.1 vs. uniprot
Match: A0A1E5BZW7_9GAMM (Isochorismate synthase MenF n=2 Tax=Enterovibrio norvegicus TaxID=188144 RepID=A0A1E5BZW7_9GAMM)

HSP 1 Score: 64.7 bits (156), Expect = 7.890e-11
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    4 RGFYAGPVGYISAGASEFAVAIRSALMT-----LFAGAGIVPGSVALSEWAETGVKV 159
            RG+Y+G VGY+SA  SEF VAIRSALM      LFAGAGIVPGSVA SEW E   K+
Sbjct:  362 RGWYSGSVGYLSAECSEFCVAIRSALMMGDSLQLFAGAGIVPGSVAESEWKELDRKM 418          
BLAST of mRNA_Ecto-sp13_S_contig62805.17018.1 vs. uniprot
Match: A0A850A7G9_9BACT (Isochorismate synthase MenF n=1 Tax=Calditrichaceae bacterium TaxID=2614252 RepID=A0A850A7G9_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 7.920e-11
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    4 RGFYAGPVGYISAGASEFAVAIRSALMT-----LFAGAGIVPGSVALSEWAETGVKV 159
            RG+YAGPVG+ISAGA+EFAVAIRS L+      LFAGAGIVPGS    EW E   K+
Sbjct:  396 RGWYAGPVGWISAGAAEFAVAIRSGLVEDERIHLFAGAGIVPGSSPEKEWQEIESKI 452          
BLAST of mRNA_Ecto-sp13_S_contig62805.17018.1 vs. uniprot
Match: A0A656SF16_VIBPH (Chorismate_bind domain-containing protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=A0A656SF16_VIBPH)

HSP 1 Score: 59.7 bits (143), Expect = 1.360e-10
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    4 RGFYAGPVGYISAGASEFAVAIRSALMT-----LFAGAGIVPGSVALSEWAE 144
            RG+YAG +GYIS   +EF VAIRSAL+      LFAGAGIVPGSVA  EWAE
Sbjct:   12 RGWYAGSMGYISHERAEFCVAIRSALVLGDQVQLFAGAGIVPGSVAEHEWAE 63          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62805.17018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV35_9PHAE4.130e-1658.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMF2_ECTSI2.690e-1556.98Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
A0A0G4GZP4_VITBC3.530e-1260.00MR_MLE domain-containing protein n=5 Tax=Vitrella ... [more]
A0A4D9D2W1_9STRA1.680e-1161.40MR_MLE domain-containing protein n=6 Tax=Monodopsi... [more]
UPI00036B459B2.680e-1166.67isochorismate synthase n=1 Tax=Enterovibrio norveg... [more]
A0A2E7EPG2_9PLAN4.230e-1158.62Isochorismate synthase MenF n=1 Tax=Planctomycetac... [more]
T0T2Y0_9PROT5.800e-1164.91Isochorismate synthase n=1 Tax=Bacteriovorax sp. B... [more]
A0A1E5BZW7_9GAMM7.890e-1166.67Isochorismate synthase MenF n=2 Tax=Enterovibrio n... [more]
A0A850A7G9_9BACT7.920e-1164.91Isochorismate synthase MenF n=1 Tax=Calditrichacea... [more]
A0A656SF16_VIBPH1.360e-1067.31Chorismate_bind domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62805contigEcto-sp13_S_contig62805:463..723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score78.2
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog2880.D8LMF2
Model size159
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
Cds size159
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463872.4228039-CDS-Ecto-sp13_S_contig62805:462..5401681463872.4228039-CDS-Ecto-sp13_S_contig62805:462..540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62805 463..540 -
1681463872.4375582-CDS-Ecto-sp13_S_contig62805:642..7231681463872.4375582-CDS-Ecto-sp13_S_contig62805:642..723Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62805 643..723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62805.17018.1prot_Ecto-sp13_S_contig62805.17018.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62805 463..723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62805.17018.1

>prot_Ecto-sp13_S_contig62805.17018.1 ID=prot_Ecto-sp13_S_contig62805.17018.1|Name=mRNA_Ecto-sp13_S_contig62805.17018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
HRGFYAGPVGYISAGASEFAVAIRSALMTLFAGAGIVPGSVALSEWAETG
VKV
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mRNA from alignment at Ecto-sp13_S_contig62805:463..723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62805.17018.1 ID=mRNA_Ecto-sp13_S_contig62805.17018.1|Name=mRNA_Ecto-sp13_S_contig62805.17018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62805:463..723- (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGGGGTTTCTACGCCGGTCCGGTGGGATACATCTCCGCCGGGGCTAG CGAATTCGCGGTGGCCATCCGCAGCGCTCTGGTCACAGATTCATGGAGCT CTCCCGAGGGGTTTTCACGGCGACGGGGGGGTCTTTGCTCCGCTGGGGGC CCAGCGGGGAGGGGCGCGGGAGGGGGGTCTGAGATGACGCTGTTTGCTGG CGCTGGGATCGTGCCCGGGTCGGTTGCTCTTTCGGAGTGGGCGGAGACTG GAGTTAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62805:463..723-

>mRNA_Ecto-sp13_S_contig62805.17018.1 ID=mRNA_Ecto-sp13_S_contig62805.17018.1|Name=mRNA_Ecto-sp13_S_contig62805.17018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62805:463..723- (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGGGGTTTCTACGCCGGTCCGGTGGGATACATCTCCGCCGGGGCTAG
CGAATTCGCGGTGGCCATCCGCAGCGCTCTGATGACGCTGTTTGCTGGCG
CTGGGATCGTGCCCGGGTCGGTTGCTCTTTCGGAGTGGGCGGAGACTGGA
GTTAAGGTG
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