mRNA_Ecto-sp13_S_contig62769.17013.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62769.17013.1
Unique NamemRNA_Ecto-sp13_S_contig62769.17013.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62769.17013.1 vs. uniprot
Match: A0A6H5JTW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW1_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 7.000e-27
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 IRKAYEDKYGRSLAKTIEKKFFGKMEDALLSLLFDPIENFARGLKAAFHGLGTDK 165
            IRKAYEDKYGRSLAKTIEKKFFGKMEDALLSLLFDPIENFARGLKAAFHGLGTDK
Sbjct:   70 IRKAYEDKYGRSLAKTIEKKFFGKMEDALLSLLFDPIENFARGLKAAFHGLGTDK 124
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BLAST of mRNA_Ecto-sp13_S_contig62769.17013.1 vs. uniprot
Match: D8LG01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG01_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 7.060e-27
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 IRKAYEDKYGRSLAKTIEKKFFGKMEDALLSLLFDPIENFARGLKAAFHGLGTDK 165
            IRKAYEDKYGRSLAKTIEKKFFGKMEDALLSLLFDPIENFARGLKAAFHGLGTDK
Sbjct:  476 IRKAYEDKYGRSLAKTIEKKFFGKMEDALLSLLFDPIENFARGLKAAFHGLGTDK 530
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62769.17013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTW1_9PHAE7.000e-27100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG01_ECTSI7.060e-27100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62769contigEcto-sp13_S_contig62769:524..757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score113.2
Seed ortholog evalue5.4e-23
Seed eggNOG ortholog2880.D8LG01
Model size234
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.calcium-dependent phospholipid binding
EggNOG OGsKOG0819@1,KOG0819@2759
Cds size234
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463871.5636435-CDS-Ecto-sp13_S_contig62769:523..7571681463871.5636435-CDS-Ecto-sp13_S_contig62769:523..757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62769 524..757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62769.17013.1prot_Ecto-sp13_S_contig62769.17013.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62769 524..757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62769.17013.1

>prot_Ecto-sp13_S_contig62769.17013.1 ID=prot_Ecto-sp13_S_contig62769.17013.1|Name=mRNA_Ecto-sp13_S_contig62769.17013.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
IRKAYEDKYGRSLAKTIEKKFFGKMEDALLSLLFDPIENFARGLKAAFHG
LGTDKVSRSCCTRAANLRALRRPSSEA*
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mRNA from alignment at Ecto-sp13_S_contig62769:524..757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62769.17013.1 ID=mRNA_Ecto-sp13_S_contig62769.17013.1|Name=mRNA_Ecto-sp13_S_contig62769.17013.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62769:524..757+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAGGAAGGCCTACGAGGACAAGTACGGCCGTTCTCTGGCCAAGACGAT
TGAGAAAAAGTTCTTTGGGAAGATGGAGGATGCCCTGCTGTCGCTTCTAT
TCGACCCCATCGAGAACTTCGCCAGAGGCCTGAAGGCCGCCTTCCACGGA
CTGGGCACGGACAAGGTCAGTCGTTCTTGCTGTACGAGGGCCGCTAATCT
TCGTGCGTTACGCCGACCGAGCTCAGAAGCATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62769:524..757+

>mRNA_Ecto-sp13_S_contig62769.17013.1 ID=mRNA_Ecto-sp13_S_contig62769.17013.1|Name=mRNA_Ecto-sp13_S_contig62769.17013.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62769:524..757+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAGGAAGGCCTACGAGGACAAGTACGGCCGTTCTCTGGCCAAGACGAT
TGAGAAAAAGTTCTTTGGGAAGATGGAGGATGCCCTGCTGTCGCTTCTAT
TCGACCCCATCGAGAACTTCGCCAGAGGCCTGAAGGCCGCCTTCCACGGA
CTGGGCACGGACAAGGTCAGTCGTTCTTGCTGTACGAGGGCCGCTAATCT
TCGTGCGTTACGCCGACCGAGCTCAGAAGCATAA
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