mRNA_Ecto-sp13_S_contig62745.17011.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig62745.17011.1
Unique NamemRNA_Ecto-sp13_S_contig62745.17011.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig62745.17011.1 vs. uniprot
Match: A0A6H5K3X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.700e-16
Identity = 35/39 (89.74%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 LRGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKV 117
            LRGD+FQHFGNAA+VQSIVD+LPDIAREIAAPLAKTDK+
Sbjct:  101 LRGDAFQHFGNAAVVQSIVDKLPDIAREIAAPLAKTDKM 139
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BLAST of mRNA_Ecto-sp13_S_contig62745.17011.1 vs. uniprot
Match: D7G1I4_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I4_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 8.160e-16
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 LRGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKV 117
            LRGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDK+
Sbjct:  350 LRGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKM 388
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BLAST of mRNA_Ecto-sp13_S_contig62745.17011.1 vs. uniprot
Match: D7G1I5_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I5_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 7.130e-15
Identity = 35/39 (89.74%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 LRGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKV 117
            LRGD+FQHFGNAA+VQSIVD+LPDIAREIAAPLAKTDK+
Sbjct:  328 LRGDAFQHFGNAAVVQSIVDKLPDIAREIAAPLAKTDKM 366
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BLAST of mRNA_Ecto-sp13_S_contig62745.17011.1 vs. uniprot
Match: A0A835YT26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT26_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.950e-6
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 RGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKV 117
            R D++  FG AAI   I+D+LP+IA+ IAAPLAKTDK+
Sbjct:  317 RADAYAAFGQAAITSQIIDKLPEIAKAIAAPLAKTDKM 354
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BLAST of mRNA_Ecto-sp13_S_contig62745.17011.1 vs. uniprot
Match: UPI001EFF56A4 (SPFH domain-containing protein n=1 Tax=Turicibacter sp. TJ11 TaxID=2806443 RepID=UPI001EFF56A4)

HSP 1 Score: 47.8 bits (112), Expect = 4.480e-5
Identity = 18/38 (47.37%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    4 RGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKV 117
            + ++++ +G AA+VQ IV++LP++A+ IA PLA+TDK+
Sbjct:  372 KAEAYKQYGEAAVVQMIVEKLPELAKNIAEPLAQTDKI 409
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BLAST of mRNA_Ecto-sp13_S_contig62745.17011.1 vs. uniprot
Match: A0A0D2VZM8_CAPO3 (Flotillin 2-PF n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VZM8_CAPO3)

HSP 1 Score: 47.8 bits (112), Expect = 4.480e-5
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 LRGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKVRL 123
            ++  +F+ +GNAAI+  +++ LP IA EIAAPLAKTD + L
Sbjct:  342 MKAAAFKQYGNAAIMNMVLEALPKIAAEIAAPLAKTDNIVL 382
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BLAST of mRNA_Ecto-sp13_S_contig62745.17011.1 vs. uniprot
Match: UPI000C6DD9E4 (flotillin-2-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DD9E4)

HSP 1 Score: 45.8 bits (107), Expect = 4.900e-5
Identity = 20/41 (48.78%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 LRGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKVRL 123
            ++  +++ +G+AAI   I+D LP IA E+AAPLAKTD++ L
Sbjct:   23 MKAAAYKQYGDAAITSLILDSLPKIAAEVAAPLAKTDEIVL 63
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BLAST of mRNA_Ecto-sp13_S_contig62745.17011.1 vs. uniprot
Match: A0A7X8L8P3_9FIRM (Flotillin family protein n=1 Tax=Epulopiscium sp. TaxID=2384 RepID=A0A7X8L8P3_9FIRM)

HSP 1 Score: 47.4 bits (111), Expect = 6.130e-5
Identity = 19/36 (52.78%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   10 DSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKV 117
            ++F+ + +AAI Q I+++LP+IAR +A PLAKTDK+
Sbjct:  379 EAFKQYNDAAITQMIIEKLPEIARAVAEPLAKTDKI 414
[Close]
BLAST of mRNA_Ecto-sp13_S_contig62745.17011.1 vs. uniprot
Match: A0A7R7ENK6_9FIRM (Flotillin n=1 Tax=Lachnospiraceae bacterium TB5 TaxID=2785025 RepID=A0A7R7ENK6_9FIRM)

HSP 1 Score: 47.0 bits (110), Expect = 8.380e-5
Identity = 17/38 (44.74%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 RGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKV 117
            + ++F+ + NAA+ Q I+++LP+IA+ +A PLAKT+K+
Sbjct:  387 KAEAFKQYNNAAVTQMIIEKLPEIAKAVAEPLAKTEKI 424
[Close]
BLAST of mRNA_Ecto-sp13_S_contig62745.17011.1 vs. uniprot
Match: A0A173SEV3_9FIRM (Flotillin family protein n=2 Tax=Turicibacter TaxID=191303 RepID=A0A173SEV3_9FIRM)

HSP 1 Score: 47.0 bits (110), Expect = 8.390e-5
Identity = 17/38 (44.74%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    4 RGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKV 117
            + ++++ +G AA++Q +V+RLP+IA+ I+APLA+T+K+
Sbjct:  372 KAEAYKQYGEAAVIQMVVERLPEIAQHISAPLAQTEKM 409
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig62745.17011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5K3X4_9PHAE6.700e-1689.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1I4_ECTSI8.160e-1697.44PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G1I5_ECTSI7.130e-1589.74PHB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YT26_9STRA1.950e-660.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001EFF56A44.480e-547.37SPFH domain-containing protein n=1 Tax=Turicibacte... [more]
A0A0D2VZM8_CAPO34.480e-551.22Flotillin 2-PF n=1 Tax=Capsaspora owczarzaki (stra... [more]
UPI000C6DD9E44.900e-548.78flotillin-2-like n=1 Tax=Centruroides sculpturatus... [more]
A0A7X8L8P3_9FIRM6.130e-552.78Flotillin family protein n=1 Tax=Epulopiscium sp. ... [more]
A0A7R7ENK6_9FIRM8.380e-544.74Flotillin n=1 Tax=Lachnospiraceae bacterium TB5 Ta... [more]
A0A173SEV3_9FIRM8.390e-544.74Flotillin family protein n=2 Tax=Turicibacter TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig62745contigEcto-sp13_S_contig62745:669..791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score77.8
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog2880.D7G1I4
Preferred nameFLOT2
Model size123
KEGG koko:K07192
KEGG Pathwayko04910,map04910
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
Exons1
EggNOG free text desc.protein localization to membrane raft
EggNOG OGsCOG2268@1,KOG2668@2759
Cds size123
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463871.4836812-CDS-Ecto-sp13_S_contig62745:668..7911681463871.4836812-CDS-Ecto-sp13_S_contig62745:668..791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig62745 669..791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig62745.17011.1prot_Ecto-sp13_S_contig62745.17011.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig62745 669..791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig62745.17011.1

>prot_Ecto-sp13_S_contig62745.17011.1 ID=prot_Ecto-sp13_S_contig62745.17011.1|Name=mRNA_Ecto-sp13_S_contig62745.17011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
LRGDSFQHFGNAAIVQSIVDRLPDIAREIAAPLAKTDKVRL
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mRNA from alignment at Ecto-sp13_S_contig62745:669..791-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig62745.17011.1 ID=mRNA_Ecto-sp13_S_contig62745.17011.1|Name=mRNA_Ecto-sp13_S_contig62745.17011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62745:669..791- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCGTGGTGATTCGTTCCAGCACTTCGGCAACGCCGCCATCGTGCAAAG
CATCGTCGACAGGCTGCCCGACATCGCCAGGGAAATCGCCGCCCCTCTCG
CCAAGACCGACAAGGTTCGACTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig62745:669..791-

>mRNA_Ecto-sp13_S_contig62745.17011.1 ID=mRNA_Ecto-sp13_S_contig62745.17011.1|Name=mRNA_Ecto-sp13_S_contig62745.17011.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig62745:669..791- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCGTGGTGATTCGTTCCAGCACTTCGGCAACGCCGCCATCGTGCAAAG
CATCGTCGACAGGCTGCCCGACATCGCCAGGGAAATCGCCGCCCCTCTCG
CCAAGACCGACAAGGTTCGACTC
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