mRNA_Ecto-sp13_S_contig6273.17009.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6273.17009.1
Unique NamemRNA_Ecto-sp13_S_contig6273.17009.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6273.17009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6273contigEcto-sp13_S_contig6273:5719..7304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size249
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-06_002650.1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463871.3628387-CDS-Ecto-sp13_S_contig6273:5718..57541681463871.3628387-CDS-Ecto-sp13_S_contig6273:5718..5754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6273 5719..5754 +
1681463871.373683-CDS-Ecto-sp13_S_contig6273:6322..64071681463871.373683-CDS-Ecto-sp13_S_contig6273:6322..6407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6273 6323..6407 +
1681463871.384148-CDS-Ecto-sp13_S_contig6273:6826..68981681463871.384148-CDS-Ecto-sp13_S_contig6273:6826..6898Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6273 6827..6898 +
1681463871.3992908-CDS-Ecto-sp13_S_contig6273:7248..73041681463871.3992908-CDS-Ecto-sp13_S_contig6273:7248..7304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6273 7249..7304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6273.17009.1prot_Ecto-sp13_S_contig6273.17009.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6273 5719..7304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6273.17009.1

>prot_Ecto-sp13_S_contig6273.17009.1 ID=prot_Ecto-sp13_S_contig6273.17009.1|Name=mRNA_Ecto-sp13_S_contig6273.17009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
TPLEIVTAELVLLIYISSFLADPIPLELRTLRELNTLSFFRHIPPQLENR
SALVQLNLRWNKLDGQIPPKLGNLSALEHLNLG
back to top

mRNA from alignment at Ecto-sp13_S_contig6273:5719..7304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6273.17009.1 ID=mRNA_Ecto-sp13_S_contig6273.17009.1|Name=mRNA_Ecto-sp13_S_contig6273.17009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1586bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6273:5719..7304+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCCGTTGGAGATAGTTACCGCTGAGCTTGTCCTGGTCCAGGCGGAGCG
ATTCCAGCTTGGCGAGCTGCCCTAGCGACGCCGAAATTTCGCCTGCATGG
TACAGAATACAGGGGGCGAGGAGGTCGTTTGCTTGTCGGTGGCATCGGTC
TAGAGAATCGATCTCCGTAGATCTTACCCCGCCTACGCCATGGTGAGTAG
GTGTGTTCTACAAGCCACGTAAGTTCCCCCAAGCTAAAGTCGGGATGACA
AACGATTGTTTGCCATTTCCGTAGGCACGTTACCGGAGGAGCTAGGGAAG
CTGATTGCTGTACTTGTCTCGACCGCAACAGCCTTTCAGGAAAATACTTC
GAATTCATTAGAAATATGTAAGAATCTCGTGTATGTGTTGGCGGGACACG
TGTCCATACATATAAATTTTTCTTCCGCGTGTGTATAAATACGTGTTTTG
TTTTCTGTCTGCAGGACGAATTCCTGAGGCGCTGGGATTGTAACAAGTTG
CTCCGCTGGGTTCTAGAAGCCCAAACGCCACTAGAAGCGTACTCGCTAAC
AAGATGGTGAGTGGGTGTTGTAGGAAGGGTGGGATAAATGTTTGTTTTTT
CCAGCTAATCTACATCTCCTCATTCCTTGCAGATCCGATCCCGCTGGAGC
TGCGAACCCTCAGAGAGCTAAACACGTTGTCGTTTTTCCGTGACCAGCTA
ACAGGGGAATTGTTACCTCGACTTAGATTATTTCTCGAACCGATCCCATG
GGCAAATCATGCCAATGCGTTGGCTGGACAGATGTTCTTCGAAGCAGAAC
GACGAATTCTGAAAAAACAGAATTAAGTGAATGTCTTGATGCACAAATCA
CCAGCGAGGTTGTTGTCTTCGATCCAAAGACTCTCCAGCTTGTGTAGGGT
TCCTAGCTCCTCGGAGATTTGTCCTGTTCAAGTCGCACAACAGAAACGTC
ACCAACCAAGACTCCACATTCTAGAATAAACATTTTCACTCCCTTCCTAG
ATAATGCGTCCCACGTAGGTATGGGCGAGTAGGTGGTGTTCCAGAAGTTA
GCATTTTTGTCGCACCTAATACAAACAACACGCCTTGCTTTGACTTGCTC
ATCTTCAGGACACATCCCACCGCAGCTAGAAAATCGGAGCGCCTTGGTGC
AGCTCAATCTCCGCTGGAACAAGTTGGATGGTGAGTCCAGGACGTCCAAC
ACCGCAAACAACTATTTCGAAATTTGCAGAAACAACAGCATGACAAATCC
GGCCCACGCGTTGGCGGGACAAATGCATCTTGTAATAAACCTCTCTCACC
GGAAAGGTGGTTTTCAGAGAGCCAAAGCGTCTGCAGCTTGCTGAGGTTTC
CCAGCGCCTTTGGAATGGGTCCTGCAACTAGTTAAAACAAATGGGCGAAG
TGAACGAAGTAACAGTAGTCAACCTTTTACAGAACATAGGGCTTTTACAG
AACACGCGTGGGTGAGTAAGTGATCGTCTAGAAGCGTATTTGATGTTCGG
AATTTGTTGCTTTGACTTGTACACCTACAGGACAAATCCCACCGAAGTTA
GGAAATCTGAGCGCCTTGGAGCACCTCAACCTCGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6273:5719..7304+

>mRNA_Ecto-sp13_S_contig6273.17009.1 ID=mRNA_Ecto-sp13_S_contig6273.17009.1|Name=mRNA_Ecto-sp13_S_contig6273.17009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6273:5719..7304+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCCGTTGGAGATAGTTACCGCTGAGCTTGTCCTGCTAATCTACATCTC
CTCATTCCTTGCAGATCCGATCCCGCTGGAGCTGCGAACCCTCAGAGAGC
TAAACACGTTGTCGTTTTTCCGACACATCCCACCGCAGCTAGAAAATCGG
AGCGCCTTGGTGCAGCTCAATCTCCGCTGGAACAAGTTGGATGGACAAAT
CCCACCGAAGTTAGGAAATCTGAGCGCCTTGGAGCACCTCAACCTCGGG
back to top