mRNA_Ecto-sp13_S_contig6271.17007.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: D8LQR2_ECTSI (Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR2_ECTSI) HSP 1 Score: 228 bits (580), Expect = 1.410e-68 Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 1
Query: 4 RVDDMLSEHVGKGQMIFPPFDQERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRRA 342
RVDDMLSEHVGKGQMIFPPFD ERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVT+RVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRRA
Sbjct: 626 RVDDMLSEHVGKGQMIFPPFDPERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRRA 738
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A835YJZ8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ8_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.380e-36 Identity = 59/112 (52.68%), Postives = 89/112 (79.46%), Query Frame = 1
Query: 4 RVDDMLSEHVGKGQMIFPPFDQERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRR 339
RVD+ + +H+G +++FPPF +ER ELGP+V ++F ++G GWR + D+V++GLGW+SVTGAG V+V AP+ +LV+ R+PL+P+E+W+TT+ FTG TVK+G+K QGRR
Sbjct: 415 RVDEFIDKHMGS-KLLFPPFSKERYQELGPMVSSEFTVVGEGWRRAGPDIVLSGLGWISVTGAGECAVKVTAPKDILVLTRDPLMPFEAWDTTSTFTGTRTVKRGKKTQGRR 525
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A7S4NA62_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NA62_9STRA) HSP 1 Score: 116 bits (291), Expect = 5.140e-28 Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 1
Query: 4 RVDDMLSEHVGKGQMIFPPFD--QERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRK 324
+ D+ ++ H G M+ PPF+ Q+R+DE+G P D I GAGW+E+AAD+ + GLGWVSVTGAG VR+ PRGV + R PL+P++ WE TA++TGG V+KG K
Sbjct: 557 KADEFVASHAGG--MLTPPFEPGQKRMDEIGEFEPHDVVIEGAGWKEAAADIALRGLGWVSVTGAGVANVRISVPRGVGISVRPPLMPFDIWEATARYTGGRAVRKGGK 663
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A4D9D9J5_9STRA (G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9J5_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.920e-27 Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1
Query: 1 DRVDDMLSEHVGKGQMIFPPFDQERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKK 327
DR + L H+G +++ PPF QER +GP V DF+I G GW+ SA D+VI+GLGW+SVTGA VRV AP V V R PL+PYE+W TTAK+TG VK ++K
Sbjct: 750 DRAGEFLDSHLG--ELVSPPFTQERRAAMGPWVSRDFEIEGTGWKTSAVDIVISGLGWISVTGALNCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAVKSDKQK 856
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A7S2W145_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W145_9STRA) HSP 1 Score: 108 bits (270), Expect = 3.070e-27 Identity = 51/116 (43.97%), Postives = 77/116 (66.38%), Query Frame = 1
Query: 1 DRVDDMLSEHVGKGQMIFPPFDQ--ERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKK-GRKKQGRR 339
D+ D+ L H G MI PP D ER++++G D ++ GAGW+E+ AD+ + G+GWV+VTGAG VRV P+G+ + R PL+P++ W TA++TGG +V+K G+ K G+R
Sbjct: 88 DKADEFLQTHAGN--MITPPLDPGPERMEQIGEFEHHDIEVDGAGWKEAGADITLRGIGWVAVTGAGTAKVRVSVPKGIGISVRPPLMPFDVWAATARYTGGRSVRKSGKSKSGKR 201
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A7S2LA52_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LA52_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.120e-26 Identity = 50/110 (45.45%), Postives = 76/110 (69.09%), Query Frame = 1
Query: 1 DRVDDMLSEHVGKGQMIFPPFD--QERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRK 324
+R D+ S+HVGK ++ PP + QER++E+G + D+ G GW+++AAD+ + GLGWV+VTGAG VR+ P+G+ + R PL+P++ WE TAK+TGG V+K K
Sbjct: 323 ERADEFTSKHVGK--ILTPPLEPGQERLEEIGEFEYHEIDVKGEGWKQAAADITLRGLGWVAVTGAGVAKVRIGVPKGIGITVRPPLMPFDVWEATAKYTGGRAVRKSTK 430
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: K0T5S6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5S6_THAOC) HSP 1 Score: 112 bits (279), Expect = 2.010e-26 Identity = 52/115 (45.22%), Postives = 81/115 (70.43%), Query Frame = 1
Query: 4 RVDDMLSEHVGKGQMIFPPFD--QERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKK-GRKKQGRR 339
+ DD +S HVGK ++ PP + Q R++E+G + ++ G GW+++AAD+ + GLGWV+VTGAG VR+ P+G+ V R PL+P++ WETTAK+TGG +V+K G+ + G+R
Sbjct: 494 KADDFISSHVGK--LLTPPLEPGQARLEEIGEFEYHEIEVQGEGWKQAAADITLRGLGWVAVTGAGRAKVRIGVPKGIGVSLRPPLMPFDVWETTAKYTGGRSVRKSGKSRTGKR 606
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A7S0VUH3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VUH3_9CRYP) HSP 1 Score: 100 bits (248), Expect = 1.200e-24 Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1
Query: 1 DRVDDMLSEHVGKGQMIFPPFDQERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKG 318
++ +D +HVG +I PPF +ER+DE+GPL T+ G + S DV+ AGLGWVS+TG G V + WAP GV VM R PL+P+E+ TT FTG KKG
Sbjct: 23 EKAEDFRRKHVGG--LIKPPFTEERLDEIGPLSKTELWAEGITFERSCVDVIFAGLGWVSLTGIGRVDINAWAPEGVGVMTRLPLMPFEALSTTESFTGAE--KKG 124
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: B8BY71_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BY71_THAPS) HSP 1 Score: 99.4 bits (246), Expect = 2.770e-24 Identity = 48/110 (43.64%), Postives = 72/110 (65.45%), Query Frame = 1
Query: 1 DRVDDMLSEHVGKGQMIFPPFDQ--ERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRK 324
++ D+ ++HVG ++ PP + ER+ ++G +I G GW+++AAD+ + GLGWV+VTGAG VRV P+GV V R PL+P++ WE TAK+TGG V+K K
Sbjct: 29 EKSDEFTAKHVGT--LLTPPLEPGPERMKDIGEFEYHTINIDGDGWKQAAADITLRGLGWVAVTGAGRAQVRVGVPKGVGVSVRPPLMPFDVWEATAKYTGGRAVRKSSK 136
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A7S3YK74_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK74_HETAK) HSP 1 Score: 101 bits (251), Expect = 3.130e-24 Identity = 50/114 (43.86%), Postives = 79/114 (69.30%), Query Frame = 1
Query: 1 DRVDDMLSEHVGKGQMIFPPFDQERVDELGPLVPT-DFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRR 339
++ +++L +H+G ++FPPF +ER L T DF I G GW ++A D+ I+GLG++ VTGAG VR+ AP+ V+V+ R+ L+PY++ ++T+KFTGG V+K + K GRR
Sbjct: 112 EKSNEVLEKHMGT--LVFPPFTEERYKTLNAETSTHDFVIEGVGWNKAAQDIHISGLGFIGVTGAGKCKVRITAPKNVMVLLRDALMPYDTRDSTSKFTGGRVVRKQKGKGGRR 223 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6271.17007.1 >prot_Ecto-sp13_S_contig6271.17007.1 ID=prot_Ecto-sp13_S_contig6271.17007.1|Name=mRNA_Ecto-sp13_S_contig6271.17007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp MLSEHVGKGQMIFPPFDQERVDELGPLVPTDFDIMGAGWRESAADVVIAGback to top mRNA from alignment at Ecto-sp13_S_contig6271:2093..3074+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6271.17007.1 ID=mRNA_Ecto-sp13_S_contig6271.17007.1|Name=mRNA_Ecto-sp13_S_contig6271.17007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=982bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6271:2093..3074+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6271:2093..3074+ >mRNA_Ecto-sp13_S_contig6271.17007.1 ID=mRNA_Ecto-sp13_S_contig6271.17007.1|Name=mRNA_Ecto-sp13_S_contig6271.17007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6271:2093..3074+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |