mRNA_Ecto-sp13_S_contig6271.17007.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6271.17007.1
Unique NamemRNA_Ecto-sp13_S_contig6271.17007.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: D8LQR2_ECTSI (Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR2_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.410e-68
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 1
Query:    4 RVDDMLSEHVGKGQMIFPPFDQERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRRA 342
            RVDDMLSEHVGKGQMIFPPFD ERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVT+RVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRRA
Sbjct:  626 RVDDMLSEHVGKGQMIFPPFDPERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTLRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRRA 738          
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A835YJZ8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ8_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.380e-36
Identity = 59/112 (52.68%), Postives = 89/112 (79.46%), Query Frame = 1
Query:    4 RVDDMLSEHVGKGQMIFPPFDQERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRR 339
            RVD+ + +H+G  +++FPPF +ER  ELGP+V ++F ++G GWR +  D+V++GLGW+SVTGAG   V+V AP+ +LV+ R+PL+P+E+W+TT+ FTG  TVK+G+K QGRR
Sbjct:  415 RVDEFIDKHMGS-KLLFPPFSKERYQELGPMVSSEFTVVGEGWRRAGPDIVLSGLGWISVTGAGECAVKVTAPKDILVLTRDPLMPFEAWDTTSTFTGTRTVKRGKKTQGRR 525          
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A7S4NA62_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NA62_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.140e-28
Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 1
Query:    4 RVDDMLSEHVGKGQMIFPPFD--QERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRK 324
            + D+ ++ H G   M+ PPF+  Q+R+DE+G   P D  I GAGW+E+AAD+ + GLGWVSVTGAG   VR+  PRGV +  R PL+P++ WE TA++TGG  V+KG K
Sbjct:  557 KADEFVASHAGG--MLTPPFEPGQKRMDEIGEFEPHDVVIEGAGWKEAAADIALRGLGWVSVTGAGVANVRISVPRGVGISVRPPLMPFDIWEATARYTGGRAVRKGGK 663          
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A4D9D9J5_9STRA (G domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9J5_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.920e-27
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    1 DRVDDMLSEHVGKGQMIFPPFDQERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKK 327
            DR  + L  H+G  +++ PPF QER   +GP V  DF+I G GW+ SA D+VI+GLGW+SVTGA    VRV AP  V V  R PL+PYE+W TTAK+TG   VK  ++K
Sbjct:  750 DRAGEFLDSHLG--ELVSPPFTQERRAAMGPWVSRDFEIEGTGWKTSAVDIVISGLGWISVTGALNCKVRVMAPEAVGVRLRSPLMPYETWATTAKWTGLRAVKSDKQK 856          
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A7S2W145_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W145_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.070e-27
Identity = 51/116 (43.97%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    1 DRVDDMLSEHVGKGQMIFPPFDQ--ERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKK-GRKKQGRR 339
            D+ D+ L  H G   MI PP D   ER++++G     D ++ GAGW+E+ AD+ + G+GWV+VTGAG   VRV  P+G+ +  R PL+P++ W  TA++TGG +V+K G+ K G+R
Sbjct:   88 DKADEFLQTHAGN--MITPPLDPGPERMEQIGEFEHHDIEVDGAGWKEAGADITLRGIGWVAVTGAGTAKVRVSVPKGIGISVRPPLMPFDVWAATARYTGGRSVRKSGKSKSGKR 201          
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A7S2LA52_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LA52_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.120e-26
Identity = 50/110 (45.45%), Postives = 76/110 (69.09%), Query Frame = 1
Query:    1 DRVDDMLSEHVGKGQMIFPPFD--QERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRK 324
            +R D+  S+HVGK  ++ PP +  QER++E+G     + D+ G GW+++AAD+ + GLGWV+VTGAG   VR+  P+G+ +  R PL+P++ WE TAK+TGG  V+K  K
Sbjct:  323 ERADEFTSKHVGK--ILTPPLEPGQERLEEIGEFEYHEIDVKGEGWKQAAADITLRGLGWVAVTGAGVAKVRIGVPKGIGITVRPPLMPFDVWEATAKYTGGRAVRKSTK 430          
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: K0T5S6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5S6_THAOC)

HSP 1 Score: 112 bits (279), Expect = 2.010e-26
Identity = 52/115 (45.22%), Postives = 81/115 (70.43%), Query Frame = 1
Query:    4 RVDDMLSEHVGKGQMIFPPFD--QERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKK-GRKKQGRR 339
            + DD +S HVGK  ++ PP +  Q R++E+G     + ++ G GW+++AAD+ + GLGWV+VTGAG   VR+  P+G+ V  R PL+P++ WETTAK+TGG +V+K G+ + G+R
Sbjct:  494 KADDFISSHVGK--LLTPPLEPGQARLEEIGEFEYHEIEVQGEGWKQAAADITLRGLGWVAVTGAGRAKVRIGVPKGIGVSLRPPLMPFDVWETTAKYTGGRSVRKSGKSRTGKR 606          
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A7S0VUH3_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VUH3_9CRYP)

HSP 1 Score: 100 bits (248), Expect = 1.200e-24
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    1 DRVDDMLSEHVGKGQMIFPPFDQERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKG 318
            ++ +D   +HVG   +I PPF +ER+DE+GPL  T+    G  +  S  DV+ AGLGWVS+TG G V +  WAP GV VM R PL+P+E+  TT  FTG    KKG
Sbjct:   23 EKAEDFRRKHVGG--LIKPPFTEERLDEIGPLSKTELWAEGITFERSCVDVIFAGLGWVSLTGIGRVDINAWAPEGVGVMTRLPLMPFEALSTTESFTGAE--KKG 124          
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: B8BY71_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BY71_THAPS)

HSP 1 Score: 99.4 bits (246), Expect = 2.770e-24
Identity = 48/110 (43.64%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    1 DRVDDMLSEHVGKGQMIFPPFDQ--ERVDELGPLVPTDFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRK 324
            ++ D+  ++HVG   ++ PP +   ER+ ++G       +I G GW+++AAD+ + GLGWV+VTGAG   VRV  P+GV V  R PL+P++ WE TAK+TGG  V+K  K
Sbjct:   29 EKSDEFTAKHVGT--LLTPPLEPGPERMKDIGEFEYHTINIDGDGWKQAAADITLRGLGWVAVTGAGRAQVRVGVPKGVGVSVRPPLMPFDVWEATAKYTGGRAVRKSSK 136          
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Match: A0A7S3YK74_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK74_HETAK)

HSP 1 Score: 101 bits (251), Expect = 3.130e-24
Identity = 50/114 (43.86%), Postives = 79/114 (69.30%), Query Frame = 1
Query:    1 DRVDDMLSEHVGKGQMIFPPFDQERVDELGPLVPT-DFDIMGAGWRESAADVVIAGLGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKKGRKKQGRR 339
            ++ +++L +H+G   ++FPPF +ER   L     T DF I G GW ++A D+ I+GLG++ VTGAG   VR+ AP+ V+V+ R+ L+PY++ ++T+KFTGG  V+K + K GRR
Sbjct:  112 EKSNEVLEKHMGT--LVFPPFTEERYKTLNAETSTHDFVIEGVGWNKAAQDIHISGLGFIGVTGAGKCKVRITAPKNVMVLLRDALMPYDTRDSTSKFTGGRVVRKQKGKGGRR 223          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6271.17007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQR2_ECTSI1.410e-6898.23Lrc5, mitochondrial YqeH-related GTPase n=1 Tax=Ec... [more]
A0A835YJZ8_9STRA1.380e-3652.68P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4NA62_9STRA5.140e-2850.46Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A4D9D9J5_9STRA1.920e-2752.29G domain-containing protein n=2 Tax=Monodopsidacea... [more]
A0A7S2W145_9STRA3.070e-2743.97Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2LA52_9STRA1.120e-2645.45Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0T5S6_THAOC2.010e-2645.22Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S0VUH3_9CRYP1.200e-2448.11Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
B8BY71_THAPS2.770e-2443.64Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3YK74_HETAK3.130e-2443.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6271contigEcto-sp13_S_contig6271:2093..3074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score219.9
Seed ortholog evalue5.7e-55
Seed eggNOG ortholog2880.D8LQR2
Model size345
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.GTP binding
EggNOG OGsCOG1161@1,KOG1249@2759
Cds size330
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463871.2904027-UTR-Ecto-sp13_S_contig6271:2092..21071681463871.2904027-UTR-Ecto-sp13_S_contig6271:2092..2107Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6271 2093..2107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463871.3007905-CDS-Ecto-sp13_S_contig6271:2107..22301681463871.3007905-CDS-Ecto-sp13_S_contig6271:2107..2230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6271 2108..2230 +
1681463871.309139-CDS-Ecto-sp13_S_contig6271:2867..30741681463871.309139-CDS-Ecto-sp13_S_contig6271:2867..3074Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6271 2868..3074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6271.17007.1prot_Ecto-sp13_S_contig6271.17007.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6271 2108..3074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6271.17007.1

>prot_Ecto-sp13_S_contig6271.17007.1 ID=prot_Ecto-sp13_S_contig6271.17007.1|Name=mRNA_Ecto-sp13_S_contig6271.17007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MLSEHVGKGQMIFPPFDQERVDELGPLVPTDFDIMGAGWRESAADVVIAG
LGWVSVTGAGPVTVRVWAPRGVLVMAREPLLPYESWETTAKFTGGSTVKK
GRKKQGRRA*
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mRNA from alignment at Ecto-sp13_S_contig6271:2093..3074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6271.17007.1 ID=mRNA_Ecto-sp13_S_contig6271.17007.1|Name=mRNA_Ecto-sp13_S_contig6271.17007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=982bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6271:2093..3074+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGGGTCGACGACATGCTGTCTGAGCACGTTGGCAAGGGCCAGATGAT CTTCCCCCCCTTCGACCAAGAGAGAGTTGACGAGCTGGGACCGCTTGTCC CCACCGACTTCGACATCATGGGGGCCGGCTGGCGAGAGGTGCGAGAGCAA TGAAAGCGAAGACAACATTATAGGAAAGACAGAAGTCAGATGGAGCGGTT GAGAGAGCCAATGAACCACGTCAAACAGGCAAAATTGGTAGAGAAAGACT GTTGGCATCGAACTTGCTGCTTAAAGGGGGTGGTTCGCGGTGTTGCCGTT GTGACGAGAGGTCCGTCAGTCGTTATCTGAGCCTGAGCGGGCAAATTTCA CTCGGCTCTTTTTCTTGTTGCCTCAACACCCGCTCGCGTTGGCTTCAAAT GACAGCGTTAAGGACAATTTCACCCAAGGTTCATGAACGCTAAACGTTCT GAACTTGCCTACTGCAACCTGTTTTCGAGGCCTTTCGTCGCCTCTGTAAC GTGAGCTCCTGCAGCAAGCAGTAGTCGGCGGCGGCAGACGTCGTGTGACA TTTTCAACCCATCGTATACACCCTTCCATGTTTCCCTCCACCATGTCTAC TCCTATAGACAGGCAGAAGTACATGCATTGTTCTCACCAGCACCTCCCCC CCCCACCGTGTTTCACCCACGGCGCCGCACGTATTCCCATGTATGCTTCT GTGGCGAAGGCGCTGTTTCACGGCTCTCATCCCCCCCCCCCCCCCCCCCC CCACGTGTTGCCGGCGCGAACTTAGTCGGCGGCAGACGTAGTGATTGCCG GGCTGGGATGGGTCAGCGTCACGGGCGCGGGGCCGGTCACCGTGCGCGTG TGGGCGCCTCGCGGTGTTCTTGTGATGGCGAGGGAGCCGCTGCTCCCGTA TGAGTCCTGGGAGACCACGGCGAAGTTCACGGGCGGTTCGACTGTCAAGA AGGGCAGGAAAAAGCAGGGACGGCGAGCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6271:2093..3074+

>mRNA_Ecto-sp13_S_contig6271.17007.1 ID=mRNA_Ecto-sp13_S_contig6271.17007.1|Name=mRNA_Ecto-sp13_S_contig6271.17007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6271:2093..3074+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTCTGAGCACGTTGGCAAGGGCCAGATGATCTTCCCCCCCTTCGA
CCAAGAGAGAGTTGACGAGCTGGGACCGCTTGTCCCCACCGACTTCGACA
TCATGGGGGCCGGCTGGCGAGAGTCGGCGGCAGACGTAGTGATTGCCGGG
CTGGGATGGGTCAGCGTCACGGGCGCGGGGCCGGTCACCGTGCGCGTGTG
GGCGCCTCGCGGTGTTCTTGTGATGGCGAGGGAGCCGCTGCTCCCGTATG
AGTCCTGGGAGACCACGGCGAAGTTCACGGGCGGTTCGACTGTCAAGAAG
GGCAGGAAAAAGCAGGGACGGCGAGCATAG
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