prot_Ecto-sp13_S_contig6270.17005.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6270.17005.1
Unique Nameprot_Ecto-sp13_S_contig6270.17005.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length409
Homology
BLAST of mRNA_Ecto-sp13_S_contig6270.17005.1 vs. uniprot
Match: D7FMJ0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ0_ECTSI)

HSP 1 Score: 804 bits (2077), Expect = 5.910e-289
Identity = 391/409 (95.60%), Postives = 397/409 (97.07%), Query Frame = 0
Query:    1 GSQGRFDIALYECEDAFCGQQDCGTFLQEICDKPGVGCMDGSGTYRMTVPAELPAGNGYKIRVGLHDSSLYDCTSTFSIIRTIPIPSMDVYVPTVVDGGEGNLDGYGGDDDDASLTVEESLSYTAGRRGLASSSSTSSDPQLYDEGTTSGFAAANDTIMASWSFDDGLGGTFARFNIDLYYCGGGCSITGDCGEMVARLCEACPDSDGSEMVTLPNVYSSHNYKIRVSTSSSIRRHGSSCSPKFEIRGKDRPLYSTPSPTALYDSGDVSLYPRPPVTVPPVEDLPSEPVVLPTVWPDWGEENYAPGQPGCDSIDVPQVRYASTTARIYVEQDTNRGGCFTLTEIWESGSRPLYPLDPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFIN 409
            GSQGRFDIALYEC DAFCGQQDCGTFLQEICD PG GCMDGSGTYRMTVPAELPAGNGYKIRVGLHDSSLYDC+STFSIIRTIPIPSM+VYVPTVVDGGEGNLDGYGGDDDDASLTVEESLSYTAGRRGLASSSSTSSDPQLYDEGTT+GFAAANDTIMASWSFDDGLG TFARFNIDLYYCGGGCSIT DCGE+VARLCEACPDSDGSEMVTLPNVYSSHNYKIRVSTSS IRR GSSCSPKFEIRGKDRPLYSTPSPT LYDS DVSLYPRPPVT PPVEDLPSEPVVLPT+WPDWGEENYAP QPGCDSIDVPQVRYASTTARIYVEQ TNRGGCFTLTEIWESGSRPLYPL+PATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFIN
Sbjct:   42 GSQGRFDIALYECGDAFCGQQDCGTFLQEICDMPGAGCMDGSGTYRMTVPAELPAGNGYKIRVGLHDSSLYDCSSTFSIIRTIPIPSMEVYVPTVVDGGEGNLDGYGGDDDDASLTVEESLSYTAGRRGLASSSSTSSDPQLYDEGTTAGFAAANDTIMASWSFDDGLGRTFARFNIDLYYCGGGCSITEDCGEIVARLCEACPDSDGSEMVTLPNVYSSHNYKIRVSTSSRIRRPGSSCSPKFEIRGKDRPLYSTPSPTVLYDSSDVSLYPRPPVTAPPVEDLPSEPVVLPTIWPDWGEENYAPEQPGCDSIDVPQVRYASTTARIYVEQATNRGGCFTLTEIWESGSRPLYPLEPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFIN 450          
BLAST of mRNA_Ecto-sp13_S_contig6270.17005.1 vs. uniprot
Match: A0A6H5KSU6_9PHAE (MEP3 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSU6_9PHAE)

HSP 1 Score: 490 bits (1261), Expect = 1.190e-168
Identity = 238/268 (88.81%), Postives = 243/268 (90.67%), Query Frame = 0
Query:  162 WSFDDGLGGTFARFNIDLYYCGGGCSITGDCGEMVARLCEACPDSDGSEMVTLPNVYSSHNYKIRVSTSSSIRRHGSSCSPKFEIRGKDRPLYSTPSPTALYDSGDVSLYPRPPVTVPPVEDLPSEPVVLPTVWPDWGEENYAPGQPGCDSIDVPQVRYASTTARIYVEQDTNRGGCFTLTEIWESGSRPLYPLDPATNER--------------------VDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFIN 409
            WSFDDGLG TFARFNIDLYYCGGGCSITGDCGEMVARLCEACPDSDGSEMVTLPNVYSSHNYKIRVSTSSSIRRHGSSCSPKFEIRGKDRPLYSTPSPTALYDS DVSLYPRPPVT PPVEDLPSEPVVLPT+WPDWGEENYAP QPGCDS+DVP+VRYASTTARIY+EQ TNRGGCFTLTEIWESGSRPLYPLDPATNER                    VDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLS+ETTFIN
Sbjct:    9 WSFDDGLGRTFARFNIDLYYCGGGCSITGDCGEMVARLCEACPDSDGSEMVTLPNVYSSHNYKIRVSTSSSIRRHGSSCSPKFEIRGKDRPLYSTPSPTALYDSSDVSLYPRPPVTAPPVEDLPSEPVVLPTIWPDWGEENYAPEQPGCDSVDVPEVRYASTTARIYLEQATNRGGCFTLTEIWESGSRPLYPLDPATNERESHSITAVLSPLALLYCRSGVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSNETTFIN 276          
BLAST of mRNA_Ecto-sp13_S_contig6270.17005.1 vs. uniprot
Match: D8LHA2_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA2_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 7.970e-26
Identity = 59/117 (50.43%), Postives = 73/117 (62.39%), Query Frame = 0
Query:  297 DWGEENYAPGQPGCDSIDVPQVRYASTTARIYVEQ--DTNRGGCFTLTEIWES--GSRPLYPLDPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFIN 409
            D    N    +P CDS     +RYA  T R+Y+E      RGGC TL ++WES  G  PLY +DP + +  +  TG WLLTEELYV DG+ L+V+GTD GGD DELRLLS   T+IN
Sbjct:   30 DTASPNDPISKPDCDSDIEVSIRYAGNTKRLYLESADGETRGGCATLGQVWESRAGKGPLYAVDPDSGDVSETQTGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSDTYIN 146          
BLAST of mRNA_Ecto-sp13_S_contig6270.17005.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.750e-25
Identity = 59/117 (50.43%), Postives = 73/117 (62.39%), Query Frame = 0
Query:  297 DWGEENYAPGQPGCDSIDVPQVRYASTTARIYVEQ--DTNRGGCFTLTEIWES--GSRPLYPLDPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFIN 409
            D    N    +P CDS     +RYAS+T R+Y+E      RGGC TL +IWE+  G  PLY +DP +    +  TG WLLTEELYV DG+ L+V+GT  GGD DELRLLS   T+IN
Sbjct:   29 DTASPNDPISKPDCDSDIAVSIRYASSTKRLYLESADGETRGGCVTLGQIWENRAGKAPLYAVDPESGNESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYIN 145          
BLAST of mRNA_Ecto-sp13_S_contig6270.17005.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.140e-25
Identity = 61/117 (52.14%), Postives = 74/117 (63.25%), Query Frame = 0
Query:  297 DWGEENYAPGQPGCDSIDVPQVRYASTTARIYVEQ--DTNRGGCFTLTEIWES--GSRPLYPLDPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFIN 409
            D    N    +P CDS     +RYA TT R+Y+E      RGGC TL +IWES  G  PLY +DP + +  +  TG WLLTEELYV DG+ L+V+GTD GGD DELRLLS   T+IN
Sbjct:   30 DTASPNDPISKPDCDSDIEVSIRYAGTTKRLYLESADGETRGGCATLGQIWESRAGKAPLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYIN 146          
BLAST of mRNA_Ecto-sp13_S_contig6270.17005.1 vs. uniprot
Match: D8LL67_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL67_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.980e-24
Identity = 84/262 (32.06%), Postives = 117/262 (44.66%), Query Frame = 0
Query:  158 IMASWSFDDGLGGTFARFNIDLYYCGGGCSITGDCGEMVARLCE---------ACPDSDGSEMVTLPNVYSSHNYKIRVSTSSSIRRHGSSCSPKFEIRGKDRPLYSTPSPTALYDSGDVSLYPRPPVTVPPVEDLPSEPVVLPTVWPDWGEENYAPGQPGCDSIDVPQVRYASTTARIYVEQ-DTNRGGCFTLTEIWESGSRPLYPLDPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFIN 409
            +   W + DG G T  RF+I+LY  G GCS     G  VA +C           CPD+ G   V +P    S  Y I+V    +    G  CSP F +   +         + + D+G V                     V+P+ W     + YA  +P CD      VRYA++T R+Y E  D   GGC TL+++    +  +             VTG WL+  +LYVT+GV LQ+HG+  GGDCD LR+ S +T F N
Sbjct:  152 VTVEWDYSDGEGSTQGRFDIELY-SGAGCS-----GSRVADICGKTNSQGDLIGCPDTAGDYDVVIPTDIMSGEYSIKVGVFGATSPSG--CSPVFSVVATN---------SGVIDTGAVGTD-----------------TVVPSPW-----DGYAFPKPACDPTIPVTVRYAASTQRVYFEHTDGTTGGCATLSDVL---AERVEKNGTVKIMNASQVTGHWLIEADLYVTNGVTLQLHGSASGGDCDALRIKSTDTEFFN 371          
BLAST of mRNA_Ecto-sp13_S_contig6270.17005.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.660e-23
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 0
Query:  318 VRYASTTARIYVEQ---DTNRGGCFTLTEIWES--GSRPLYPLDPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFIN 409
            +RYA +TAR+Y+E     T RGGC TL +IWES  G  PLY +DP +       TG WLLTEELYV DG+ L+V+G++ GGD DELRLLS   TFIN
Sbjct:   46 IRYAESTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFIN 142          
BLAST of mRNA_Ecto-sp13_S_contig6270.17005.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.820e-23
Identity = 56/97 (57.73%), Postives = 67/97 (69.07%), Query Frame = 0
Query:  318 VRYASTTARIYVEQ---DTNRGGCFTLTEIWES--GSRPLYPLDPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFIN 409
            +RYA TTAR+Y+E     T RGGC TL +IWES  G  PLY +DP +       TG WLLTEELYV DG+ L+V+G++ GGD DELRLLS   TFIN
Sbjct:   46 IRYAGTTARLYLESADNGTTRGGCVTLGQIWESRAGKGPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFIN 142          
BLAST of mRNA_Ecto-sp13_S_contig6270.17005.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 6.630e-23
Identity = 57/119 (47.90%), Postives = 72/119 (60.50%), Query Frame = 0
Query:  299 GEENYAPGQP----GCDSIDVPQVRYASTTARIYVEQ--DTNRGGCFTLTEIWES--GSRPLYPLDPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFIN 409
            G++  +P +P     CD      +RY+S   R+Y+E      RGGC TL +IWE   G  PLY +D  + +  D  TG WLLTEEL+V DG+ L+VHGT  GGD DELRLLS   TFIN
Sbjct:   21 GKDTKSPNEPIPKPECDESIAVSIRYSSVYERLYLESADSKTRGGCVTLEQIWEHQRGEAPLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFIN 139          
BLAST of mRNA_Ecto-sp13_S_contig6270.17005.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.370e-22
Identity = 55/107 (51.40%), Postives = 67/107 (62.62%), Query Frame = 0
Query:  307 QPGCDSIDVPQVRYASTTARIYVEQDTNR--GGCFTLTEIWES--GSRPLYPLDPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFIN 409
            +P CDS     VRY + +AR+Y+E    R  GGC TL +IWE      PLY +DP + +     TG WLLTEE+YV DG+ LQVHG   GGD DELRLLS   TFI+
Sbjct:    7 KPDCDSSIAVSVRYNAESARLYIESANGRTRGGCVTLEQIWEQQVDGSPLYAVDPKSGDVSRSATGTWLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIH 113          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6270.17005.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FMJ0_ECTSI5.910e-28995.60Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KSU6_9PHAE1.190e-16888.81MEP3 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LHA2_ECTSI7.970e-2650.43Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5JU98_9PHAE1.750e-2550.43MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FXE4_ECTSI2.140e-2552.14Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LL67_ECTSI1.980e-2432.06Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE5_ECTSI2.660e-2356.70Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI2.820e-2357.73Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
Q7XAJ7_9PHAE6.630e-2347.90Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
Q7XAJ8_9PHAE1.370e-2251.40Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 299..409
e-value: 8.8E-7
score: 30.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6270contigEcto-sp13_S_contig6270:3..7328 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6270.17005.1mRNA_Ecto-sp13_S_contig6270.17005.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6270 3..7328 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6270.17005.1 ID=prot_Ecto-sp13_S_contig6270.17005.1|Name=mRNA_Ecto-sp13_S_contig6270.17005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=409bp
GSQGRFDIALYECEDAFCGQQDCGTFLQEICDKPGVGCMDGSGTYRMTVP
AELPAGNGYKIRVGLHDSSLYDCTSTFSIIRTIPIPSMDVYVPTVVDGGE
GNLDGYGGDDDDASLTVEESLSYTAGRRGLASSSSTSSDPQLYDEGTTSG
FAAANDTIMASWSFDDGLGGTFARFNIDLYYCGGGCSITGDCGEMVARLC
EACPDSDGSEMVTLPNVYSSHNYKIRVSTSSSIRRHGSSCSPKFEIRGKD
RPLYSTPSPTALYDSGDVSLYPRPPVTVPPVEDLPSEPVVLPTVWPDWGE
ENYAPGQPGCDSIDVPQVRYASTTARIYVEQDTNRGGCFTLTEIWESGSR
PLYPLDPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRL
LSDETTFIN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold